Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 1.4e-251 872.5 442 100.0
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 7.2e-155 551.2 441 66.2
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 8.3e-135 484.6 504 54.2
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 1.2e-125 454.1 475 52.8
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 3.5e-125 452.6 473 52.6
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 4.5e-125 452.2 467 53.7
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 5.0e-124 448.7 474 53.8
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 5.6e-123 445.3 473 51.8
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.1e-122 441.8 478 52.9
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.3e-121 439.9 476 52.7
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 5.8e-120 435.3 484 52.1
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 7.0e-118 428.3 482 51.0
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 5.0e-116 422.2 467 51.6
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 6.6e-116 421.8 464 51.5
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 3.3e-115 419.5 450 52.4
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 2.8e-114 416.4 474 49.8
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 1.1e-113 414.5 443 53.0
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 1.2e-112 411.0 449 50.8
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.5e-112 410.6 451 51.9
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.6e-112 409.8 458 51.7
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 4.4e-112 409.1 445 48.5
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 7.5e-112 408.3 435 52.4
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 9.8e-112 407.9 463 49.5
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 4.9e-111 405.6 451 52.8
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 6.4e-111 405.2 445 51.7
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 7.1e-110 401.7 457 49.9
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.2e-109 401.0 466 48.9
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 6.0e-109 398.7 445 50.1
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 6.0e-109 398.7 421 53.2
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 1.0e-108 397.9 457 50.1
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 5.1e-108 395.6 477 49.9
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 6.6e-108 395.2 438 51.1
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 4.3e-107 392.5 431 50.8
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 4.3e-107 392.5 431 50.8
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.2e-106 391.0 439 50.1
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 8.1e-106 388.3 462 48.5
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 3.1e-105 386.3 468 50.0
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.5e-104 384.0 435 50.3
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 4.4e-104 382.5 439 50.8
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 4.4e-104 382.5 434 47.2
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 7.6e-104 381.7 464 49.6
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 6.4e-103 378.6 474 47.0
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 1.4e-102 377.5 413 53.0
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 4.1e-102 375.9 440 50.9
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 1.0e-100 371.3 446 48.2
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 5.1e-100 369.0 494 46.8
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.5e-99 366.7 396 52.5
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 4.3e-99 365.9 443 46.7
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 3.1e-97 359.8 421 47.5
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 8.9e-97 358.2 476 46.4
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 5.4e-94 349.0 493 44.0
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 3.5e-93 346.3 427 47.5
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 6.2e-90 335.5 453 46.1
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 8.4e-87 325.1 391 48.3
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 2.7e-85 320.1 377 49.1
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 1.8e-81 307.4 420 42.9
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.5e-80 304.3 437 41.4
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 3.2e-78 296.6 409 46.0
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.1e-74 283.9 413 41.9
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 3.7e-74 283.1 420 40.5
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 2.9e-71 273.5 415 40.0
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 5.5e-70 269.2 415 38.3
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.1e-69 267.3 422 38.9
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.1e-67 261.5 428 38.6
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.1e-65 255.0 416 37.3
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.1e-65 253.4 462 36.4
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 4.1e-65 253.1 421 35.9
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 2.6e-64 250.4 412 36.9
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 5.8e-64 249.2 412 39.8
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 1.0e-63 248.4 428 35.5
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.7e-63 247.7 414 37.4
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 1.7e-63 247.7 429 38.7
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 6.5e-63 245.7 416 36.8
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 6.5e-63 245.7 416 36.8
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 2.5e-62 243.8 416 36.8
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 4.2e-62 243.0 428 37.6
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 9.3e-62 241.9 427 39.1
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 1.2e-61 241.5 416 36.5
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 1.6e-61 241.1 405 37.8
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 7.9e-61 238.8 432 37.0
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 7.9e-61 238.8 409 37.9
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 5.1e-60 236.1 424 39.2
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.5e-59 234.6 357 39.8
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 3.7e-58 229.9 407 37.3
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.1e-57 228.4 409 37.9
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 1.8e-57 227.6 369 38.5
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.5e-56 224.6 344 38.7
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 7.7e-56 222.2 318 45.3
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 5.5e-54 216.1 398 35.4
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 9.4e-54 215.3 414 33.6
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 1.8e-52 211.1 334 41.9
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 2.3e-52 210.7 334 38.9
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.5e-51 208.0 338 38.5
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.4e-49 201.4 431 32.7
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.8e-49 201.1 342 37.4
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 4.5e-48 196.4 231 45.5
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.0e-47 195.3 334 37.7
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 1.7e-47 194.5 419 34.1
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 1.7e-47 194.5 397 34.5
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 2.2e-47 194.1 370 35.1
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.8e-47 193.4 352 34.1
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.9e-46 191.0 322 37.3
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.2e-45 188.3 399 32.3
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 2.3e-44 184.1 348 33.9
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 3.0e-44 183.7 415 35.4
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 6.7e-44 182.6 347 34.9
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 1.5e-43 181.4 340 35.6
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.5e-43 181.4 346 32.4
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 2.6e-43 180.6 409 31.5
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 6.3e-42 176.0 132 59.8
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.1e-41 173.7 302 37.7
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 4.5e-40 169.9 210 47.1
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 2.2e-39 167.5 371 32.3
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.9e-39 167.2 133 57.1
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.5e-38 164.9 362 35.4
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.5e-38 164.9 336 33.0
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 9.4e-38 162.2 334 32.9
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 7.5e-35 152.5 140 53.6
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 9.7e-35 152.1 279 36.6
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 9.7e-35 152.1 279 36.6
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 2.2e-34 151.0 140 52.9
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 2.8e-34 150.6 267 37.1
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 6.3e-34 149.4 335 35.8
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 5.9e-32 142.9 163 46.6
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 2.9e-31 140.6 272 36.0
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 3.8e-31 140.2 356 32.3
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 3.8e-31 140.2 106 59.4
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 2.5e-30 137.5 162 46.3
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 3.2e-30 137.1 153 45.8
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 3.2e-30 137.1 268 40.3
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 6.1e-29 132.9 400 30.8
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 2.3e-28 131.0 186 39.8
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 6.8e-28 129.4 147 49.0
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.0e-27 127.9 388 29.9
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 2.7e-24 117.5 267 30.7
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 1.5e-22 111.7 73 79.5
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.6e-21 107.1 110 54.5
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 3.6e-21 107.1 139 41.7
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.5e-19 101.7 111 46.8
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 9.8e-19 99.0 117 42.7
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 5.4e-17 93.2 161 34.8
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 1.6e-16 91.7 81 51.9
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 3.5e-16 90.5 106 46.2
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 9.5e-14 82.4 110 41.8
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 9.2e-09 65.9 99 39.4
Rhsim04G0168400 Rhododendron simsii HOM05D000018 ORTHO05D008577 2.3e-07 61.2 71 43.7
Nn2g11162 Nelumbo nucifera HOM05D000080 ORTHO05D000053 3.3e-06 57.4 39 69.2


User provided reference genes

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