Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G1561 Erigeron canadensis HOM05D005137 ORTHO05D006478 1.8e-87 325.9 164 100.0
HanXRQChr01g0027021 Helianthus annuus HOM05D005137 ORTHO05D006478 2.7e-83 312.0 164 93.3
Lsat_1_v5_gn_1_53501 Lactuca sativa HOM05D005137 ORTHO05D006478 1.3e-77 293.1 164 86.6
CANSAT25G3131 Cannabis sativa HOM05D005137 ORTHO05D006478 4.7e-67 258.1 164 72.6
CANSAT64G0780 Cannabis sativa HOM05D005137 ORTHO05D006478 2.0e-65 252.7 164 71.3
CSS0031544 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 4.4e-65 251.5 164 73.2
CSS0044586 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 4.4e-65 251.5 164 73.2
Manes.02G220500 Manihot esculenta HOM05D005137 ORTHO05D006478 9.7e-65 250.4 164 70.7
Migut.N03340 Erythranthe guttata HOM05D005137 ORTHO05D006478 1.3e-64 250.0 164 69.5
SalBow6G2431 Salvia bowleyana HOM05D005137 ORTHO05D006478 1.3e-64 250.0 164 69.5
SalBow6G5561 Salvia bowleyana HOM05D005137 ORTHO05D006478 1.3e-64 250.0 164 69.5
TAR628G0708 Trochodendron aralioides HOM05D005137 ORTHO05D006478 4.8e-64 248.1 164 69.5
CSS0049152 Camellia sinensis var. sinensis HOM05D005137 ORTHO05D006478 6.3e-64 247.7 164 72.0
Sabra13G0097100 Salix brachista HOM05D005137 ORTHO05D006478 8.2e-64 247.3 166 71.1
Medtr3g078663 Medicago truncatula HOM05D005137 ORTHO05D006478 1.1e-63 246.9 164 70.7
Ciclev10002730m.g Citrus clementina HOM05D005137 ORTHO05D006478 1.4e-63 246.5 164 68.9
TWI34G1514 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 1.4e-63 246.5 164 70.1
Lj1g0006567 Lotus japonicus HOM05D005137 ORTHO05D006478 1.8e-63 246.1 164 70.7
Prupe.8G054100 Prunus persica HOM05D005137 ORTHO05D006478 2.4e-63 245.7 164 68.9
MD10G1046500 Malus domestica HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 70.7
Peaxi162Scf00020g02234 Petunia axillaris HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 70.7
TWI32G0414 Tripterygium wilfordii HOM05D005137 ORTHO05D006478 3.1e-63 245.4 164 70.1
RcHm_v2.0_Chr6g0272201 Rosa chinensis HOM05D005137 ORTHO05D006478 5.3e-63 244.6 164 68.9
Oeu039592.1 Olea europaea HOM05D005137 ORTHO05D006478 7.0e-63 244.2 164 69.5
Potri.013G114800 Populus trichocarpa HOM05D005137 ORTHO05D006478 9.1e-63 243.8 166 69.3
Aqoxy5G03157 Aquilegia oxysepala HOM05D005137 ORTHO05D006478 1.6e-62 243.0 164 68.9
CAN.G623.4 Capsicum annuum HOM05D005137 ORTHO05D006478 2.0e-62 242.7 164 68.9
Potri.019G085500 Populus trichocarpa HOM05D005137 ORTHO05D006478 2.0e-62 242.7 166 68.7
Sopen08g021770 Solanum pennellii HOM05D005137 ORTHO05D006478 3.5e-62 241.9 164 68.3
CsaV3_2G035870 Cucumis sativus L. HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 67.7
Solyc08g067830.3 Solanum lycopersicum HOM05D005137 ORTHO05D006478 4.5e-62 241.5 164 68.3
Ca_16220_v3 Cicer arietinum L. HOM05D005137 ORTHO05D006478 5.9e-62 241.1 164 69.5
PSO210G7193 Papaver somniferum HOM05D005137 ORTHO05D006478 5.9e-62 241.1 164 67.7
Lalb_Chr01g0009971 Lupinus albus HOM05D005137 ORTHO05D006478 7.7e-62 240.7 164 67.1
Nn5g27795 Nelumbo nucifera HOM05D005137 ORTHO05D006478 7.7e-62 240.7 164 67.1
Eucgr.F04136 Eucalyptus grandis HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 69.5
PGSC0003DMG400033629 Solanum tuberosum HOM05D005137 ORTHO05D006478 1.0e-61 240.4 164 67.7
MELO3C024753.2 Cucumis melo HOM05D005137 ORTHO05D006478 1.7e-61 239.6 164 67.1
CDE05G2425 Ceratophyllum demersum HOM05D005137 ORTHO05D006478 2.2e-61 239.2 164 67.7
PGR004G0411 Punica granatum HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 67.7
Sed0020054 Sechium edule HOM05D005137 ORTHO05D006478 2.9e-61 238.8 164 66.5
Cfa018205 Carpinus fangiana HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 68.9
PSO238G0018 Papaver somniferum HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 67.7
GSVIVG01023270001 Vitis vinifera HOM05D005137 ORTHO05D006478 3.8e-61 238.4 164 67.1
Atru.chr13.1812 Acer truncatum HOM05D005137 ORTHO05D006478 6.5e-61 237.7 164 67.7
DCAR_006419 Daucus carota HOM05D005137 ORTHO05D006478 8.5e-61 237.3 164 68.3
Oeu021007.1 Olea europaea HOM05D005137 ORTHO05D006478 8.5e-61 237.3 164 68.3
MSTRG.22441 Avicennia marina HOM05D005137 ORTHO05D006478 1.1e-60 236.9 164 65.9
Psat5g109360 Pisum sativum HOM05D005137 ORTHO05D006478 1.1e-60 236.9 156 71.8
arahy.Tifrunner.gnm1.ann1.RF3N8D Arachis hypogaea HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 65.9
arahy.Tifrunner.gnm1.ann1.UQ6TGS Arachis hypogaea HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 65.9
THA.LOC104813096 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 1.5e-60 236.5 164 66.5
CiPaw.15G082700 Carya illinoinensis HOM05D005137 ORTHO05D006478 1.9e-60 236.1 164 68.9
Dinv41687 Davidia involucrata HOM05D005137 ORTHO05D006478 1.9e-60 236.1 164 67.1
Lalb_Chr03g0035851 Lupinus albus HOM05D005137 ORTHO05D006478 1.9e-60 236.1 164 67.7
Sp1g29570 Schrenkiella parvula HOM05D005137 ORTHO05D006478 1.9e-60 236.1 164 65.9
BcaB03g13677 Brassica carinata HOM05D005137 ORTHO05D006478 2.5e-60 235.7 164 66.5
Gorai.009G263900 Gossypium raimondii HOM05D005137 ORTHO05D006478 3.2e-60 235.3 164 67.1
Carub.0001s3248 Capsella rubella HOM05D005137 ORTHO05D006478 4.2e-60 235.0 164 65.9
Thhalv10008956m.g Eutrema salsugineum HOM05D005137 ORTHO05D006478 4.2e-60 235.0 164 65.2
Glyma.16G156600 Glycine max HOM05D005137 ORTHO05D006478 4.2e-60 235.0 164 65.9
Cpa.g.sc66.58 Carica papaya HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 65.2
Glyma.09G166500 Glycine max HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 66.5
MD05G1040400 Malus domestica HOM05D005137 ORTHO05D006478 5.5e-60 234.6 164 68.9
AUR62023580 Chenopodium quinoa HOM05D005137 ORTHO05D006478 9.4e-60 233.8 157 68.2
AL1G48900 Arabidopsis lyrata HOM05D005137 ORTHO05D006478 1.2e-59 233.4 164 65.9
FvH4_2g12231 Fragaria vesca HOM05D005137 ORTHO05D006478 1.2e-59 233.4 164 65.9
A08p08280 Brassica napus HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 65.2
Glyma.02G074600 Glycine max HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 65.2
Hund27077 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.6e-59 233.0 162 66.0
SGA_v2.0_scaffold149G36609 Striga asiatica HOM05D005137 ORTHO05D006478 1.6e-59 233.0 164 65.2
Gohir.D05G253100 Gossypium hirsutum HOM05D005137 ORTHO05D006478 2.1e-59 232.6 164 66.5
AT1G34350 Arabidopsis thaliana HOM05D005137 ORTHO05D006478 3.6e-59 231.9 164 65.2
FAN20G1842 Fragaria x ananassa HOM05D005137 ORTHO05D006478 3.6e-59 231.9 164 65.2
C06p11610 Brassica napus HOM05D005137 ORTHO05D006478 4.7e-59 231.5 164 64.0
VMungo0464G1968 Vigna mungo HOM05D005137 ORTHO05D006478 6.1e-59 231.1 164 64.0
BcaB07g33131 Brassica carinata HOM05D005137 ORTHO05D006478 8.0e-59 230.7 164 64.0
Duzib177G1119 Durio zibethinus HOM05D005137 ORTHO05D006478 8.0e-59 230.7 164 65.9
Gohir.A05G250700 Gossypium hirsutum HOM05D005137 ORTHO05D006478 8.0e-59 230.7 164 65.9
THA.LOC104806781 Tarenaya hassleriana HOM05D005137 ORTHO05D006478 8.0e-59 230.7 164 64.0
Phvul.004G084500 Phaseolus vulgaris HOM05D005137 ORTHO05D006478 1.8e-58 229.6 164 64.0
Sc01g0001710 Simmondsia chinensis HOM05D005137 ORTHO05D006478 2.3e-58 229.2 164 64.0
Thecc.08G201900 Theobroma cacao HOM05D005137 ORTHO05D006478 2.3e-58 229.2 164 65.2
BcaC05g27759 Brassica carinata HOM05D005137 ORTHO05D006478 4.0e-58 228.4 164 64.6
C05p37550 Brassica napus HOM05D005137 ORTHO05D006478 4.0e-58 228.4 164 64.6
BcaC08g43783 Brassica carinata HOM05D005137 ORTHO05D006478 8.8e-58 227.3 164 62.2
BolC6t36295H Brassica oleracea HOM05D005137 ORTHO05D006478 8.8e-58 227.3 164 62.2
ClCG02G007860 Citrullus lanatus HOM05D005137 ORTHO05D006478 8.8e-58 227.3 160 66.9
FAN27G0578 Fragaria x ananassa HOM05D005137 ORTHO05D006478 8.8e-58 227.3 164 64.0
Cc10_g11140 Coffea canephora HOM05D005137 ORTHO05D006478 1.2e-57 226.9 164 64.6
Haze_17904 Corylus avellana HOM05D005137 ORTHO05D006478 1.2e-57 226.9 188 60.6
EL10Ac1g00786 Beta vulgaris HOM05D005137 ORTHO05D006478 2.6e-57 225.7 164 63.4
Duzib116G0364 Durio zibethinus HOM05D005137 ORTHO05D006478 3.4e-57 225.3 164 65.2
Aa31LG6G8420 Aethionema arabicum HOM05D005137 ORTHO05D006478 1.3e-56 223.4 173 60.1
Nitab4.5_0000125g0160 Nicotiana tabacum HOM05D005137 ORTHO05D006478 1.3e-56 223.4 164 64.0
Hund16805 Selenicereus undatus HOM05D005137 ORTHO05D006478 1.7e-56 223.0 164 62.8
unitig_52.g17664 Utricularia gibba HOM05D005137 ORTHO05D006478 2.2e-56 222.6 164 62.8
ATR0584G018 Amborella trichopoda HOM05D005137 ORTHO05D006478 4.8e-56 221.5 164 64.0
HPP92_025038 Vanilla planifolia HOM05D005137 ORTHO05D006478 4.1e-55 218.4 164 61.6
Medtr1g083990 Medicago truncatula HOM05D001444 ORTHO05D006478 9.1e-55 217.2 174 62.1
BolC8t47866H Brassica oleracea HOM05D005137 ORTHO05D006478 1.6e-54 216.5 185 56.2
BraA08t32846Z Brassica rapa HOM05D005137 ORTHO05D006478 1.6e-54 216.5 193 54.9
PSO063G4111 Papaver somniferum HOM05D005137 ORTHO05D006478 2.0e-54 216.1 171 61.4
BolC5t32496H Brassica oleracea HOM05D005137 ORTHO05D006478 1.7e-53 213.0 191 55.0
Zm00001eb174480 Zea mays HOM05D005137 ORTHO05D006478 1.9e-52 209.5 164 57.3
Os08g0104100 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 8.0e-51 204.1 162 55.6
SEGI_32859 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 7.0e-47 191.0 170 57.1
SEGI_32911 Sequoiadendron giganteum HOM05D005137 ORTHO05D006478 7.0e-47 191.0 170 57.1
Os05g0432500 Oryza sativa ssp. japonica HOM05D005137 ORTHO05D006478 1.2e-46 190.3 164 51.8
CARHR033800 Cardamine hirsuta HOM05D005137 ORTHO05D006478 1.9e-44 183.0 133 63.2
FAN24G3447 Fragaria x ananassa HOM05D004393 ORTHO05D004897 3.6e-43 178.7 132 62.1
AUR62004663 Chenopodium quinoa HOM05D005137 ORTHO05D006478 4.0e-42 175.3 167 53.3
Nitab4.5_0006579g0080 Nicotiana tabacum HOM05D005137 ORTHO05D006478 8.9e-42 174.1 164 52.4
Pp3c12_6500 Physcomitrium patens HOM05D005137 ORTHO05D006478 7.5e-41 171.0 168 49.4
unitig_62.g23355 Utricularia gibba HOM05D005137 ORTHO05D006478 4.9e-40 168.3 167 51.5
COL.COLO4_35446 Corchorus olitorius HOM05D005137 ORTHO05D006478 2.4e-39 166.0 222 44.1
AagrBONN_evm.TU.Sc2ySwM_117.1441 Anthoceros agrestis HOM05D005137 ORTHO05D006478 3.5e-38 162.2 159 48.4
Mapoly0118s0004 Marchantia polymorpha HOM05D005137 ORTHO05D006478 1.5e-36 156.8 168 47.6
CAN.G21.12 Capsicum annuum HOM05D005137 ORTHO05D006478 1.1e-34 150.6 98 74.5
Glyma.16G216600 Glycine max HOM05D005137 ORTHO05D006478 1.8e-34 149.8 117 63.2
SMO115G0137 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 9.8e-33 144.1 121 52.9
SMO304G0014 Selaginella moellendorffii HOM05D005137 ORTHO05D006478 4.9e-32 141.7 161 47.2
Rhsim06G0097400 Rhododendron simsii HOM05D005137 ORTHO05D006478 1.6e-30 136.7 82 80.5
Actinidia32879 Actinidia chinensis HOM05D005137 ORTHO05D006478 2.7e-30 136.0 94 72.3
Lj7P297T42 Lonicera japonica HOM05D005137 ORTHO05D006478 7.8e-30 134.4 83 78.3
Peaxi162Scf00105g01425 Petunia axillaris HOM05D005137 ORTHO05D006478 1.3e-29 133.7 91 72.5
QL02p034100 Quercus lobata HOM05D005137 ORTHO05D006478 1.2e-27 127.1 84 73.8
Cre02.g142150 Chlamydomonas reinhardtii HOM05D005137 ORTHO05D006478 2.1e-27 126.3 126 48.4
BraA09t38756Z Brassica rapa HOM05D005137 ORTHO05D006478 8.1e-27 124.4 96 55.2
QL02p034107 Quercus lobata HOM05D005137 ORTHO05D006478 1.3e-24 117.1 82 62.2
arahy.Tifrunner.gnm1.ann1.T3MISZ Arachis hypogaea HOM05D005137 ORTHO05D006478 1.0e-21 107.5 66 74.2
SGA_v2.0_scaffold386G50489 Striga asiatica HOM05D005137 ORTHO05D006478 2.3e-21 106.3 98 57.1
Zm00001eb289230 Zea mays HOM05D005137 ORTHO05D006478 3.8e-16 89.0 87 49.4
MCO05G717 Micromonas commoda HOM05D005137 ORTHO05D006478 8.4e-16 87.8 119 35.3
Dinv30978 Davidia involucrata HOM05D005137 ORTHO05D006478 1.1e-15 87.4 69 52.2
BcaB04g17880 Brassica carinata HOM05D005137 ORTHO05D006478 2.4e-15 86.3 57 59.6
arahy.Tifrunner.gnm1.ann1.T6GVNL Arachis hypogaea HOM05D005137 ORTHO05D006478 5.1e-13 78.6 53 69.8
arahy.Tifrunner.gnm1.ann1.84LCSI Arachis hypogaea HOM05D005137 ORTHO05D013367 9.6e-12 74.3 46 71.7
Lj7C297T10 Lonicera japonica HOM05D005137 ORTHO05D006478 1.6e-11 73.6 47 61.7
vmacro12499 Vaccinium macrocarpon HOM05D005137 ORTHO05D006478 3.6e-11 72.4 46 60.9
arahy.Tifrunner.gnm1.ann1.A3G9LL Arachis hypogaea HOM05D005137 ORTHO05D006478 1.1e-10 70.9 48 66.7
SGA_v2.0_scaffold1053G53813 Striga asiatica HOM05D005137 ORTHO05D006478 1.2e-09 67.4 99 42.4
TPR.G27590 Trifolium pratense HOM05D005137 ORTHO05D006478 1.2e-09 67.4 47 57.4
Medtr2g069440 Medicago truncatula HOM05D003000 ORTHO05D003699 9.9e-09 64.3 48 62.5
BraA09t38755Z Brassica rapa HOM05D005137 ORTHO05D006478 5.4e-07 58.5 32 81.2


User provided reference genes

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