Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G1140 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.0e-148 530.0 268 100.0
Lsat_1_v5_gn_1_107340 Lactuca sativa HOM05D004075 ORTHO05D004538 3.7e-53 212.6 235 54.0
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 1.4e-47 194.1 262 47.3
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 9.7e-46 188.0 267 44.2
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 5.5e-41 172.2 250 44.8
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.8e-39 167.2 255 43.9
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 5.2e-39 165.6 280 41.4
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 2.0e-38 163.7 278 43.5
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 1.3e-37 161.0 272 41.2
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 1.3e-37 161.0 272 41.2
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 2.2e-37 160.2 273 43.2
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.1e-36 157.9 274 42.0
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.4e-36 157.5 288 41.0
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.8e-36 157.1 274 42.7
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 4.1e-36 156.0 289 40.8
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 2.6e-35 153.3 268 40.3
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 7.7e-35 151.8 283 37.8
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 1.0e-34 151.4 268 43.3
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 1.0e-34 151.4 268 41.4
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.7e-34 150.6 288 39.9
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 5.0e-34 149.1 256 42.6
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.1e-33 147.9 255 40.4
Sopen01g034160 Solanum pennellii HOM05D004075 ORTHO05D004538 1.1e-33 147.9 252 41.3
Solyc01g087080.4 Solanum lycopersicum HOM05D004075 ORTHO05D004538 1.9e-33 147.1 252 40.9
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 3.2e-33 146.4 256 41.8
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 3.2e-33 146.4 280 38.9
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 4.2e-33 146.0 284 39.1
Rhsim01G0129700 Rhododendron simsii HOM05D004075 ORTHO05D004538 7.2e-33 145.2 263 41.4
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 9.4e-33 144.8 256 40.2
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 9.4e-33 144.8 258 41.1
CANSAT80G2751 Cannabis sativa HOM05D004075 ORTHO05D004538 2.7e-32 143.3 252 41.7
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.0e-31 141.4 265 39.6
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.0e-31 141.4 268 40.7
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.4e-31 141.0 255 42.0
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 1.4e-31 141.0 203 43.3
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 5.2e-31 139.0 275 39.6
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 8.8e-31 138.3 293 38.6
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 1.2e-30 137.9 251 40.6
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.2e-30 137.9 271 38.7
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.0e-30 137.1 253 40.3
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 2.0e-30 137.1 269 37.9
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 2.0e-30 137.1 284 36.3
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 2.6e-30 136.7 276 39.9
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 3.4e-30 136.3 254 39.0
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 4.4e-30 136.0 272 39.7
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 4.4e-30 136.0 265 39.2
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 5.7e-30 135.6 240 40.8
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 5.7e-30 135.6 276 38.8
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 7.5e-30 135.2 257 39.3
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.5e-30 135.2 249 40.6
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 9.7e-30 134.8 256 38.3
Nn2g15469 Nelumbo nucifera HOM05D004075 ORTHO05D004538 9.7e-30 134.8 278 39.2
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 1.3e-29 134.4 240 40.0
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 1.3e-29 134.4 240 40.0
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 1.7e-29 134.0 282 40.1
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 2.8e-29 133.3 253 41.5
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.8e-29 133.3 275 38.9
Manes.07G005500 Manihot esculenta HOM05D004075 ORTHO05D004538 2.8e-29 133.3 211 41.7
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 4.8e-29 132.5 231 38.5
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 8.3e-29 131.7 241 39.0
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 8.3e-29 131.7 271 37.3
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 1.1e-28 131.3 240 39.6
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.1e-28 131.3 252 40.1
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 1.1e-28 131.3 273 38.1
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.4e-28 131.0 246 40.2
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 1.4e-28 131.0 262 38.9
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.8e-28 130.6 247 38.1
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.4e-28 130.2 288 37.2
TAR633G2155 Trochodendron aralioides HOM05D004075 ORTHO05D004538 3.1e-28 129.8 212 39.6
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 4.1e-28 129.4 267 38.2
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 5.3e-28 129.0 252 38.9
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.2e-27 127.9 263 40.3
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 1.2e-27 127.9 262 39.3
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 1.6e-27 127.5 240 38.3
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 1.6e-27 127.5 240 38.3
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 2.7e-27 126.7 271 36.9
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 2.7e-27 126.7 251 38.2
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 3.5e-27 126.3 251 38.2
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 5.9e-27 125.6 269 36.8
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 5.9e-27 125.6 242 37.2
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 5.9e-27 125.6 242 37.2
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 5.9e-27 125.6 272 38.2
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 1.7e-26 124.0 263 38.0
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 1.7e-26 124.0 271 37.3
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 2.2e-26 123.6 262 37.0
MBI01_g18891_MAGBIO Magnolia biondii HOM05D004075 ORTHO05D004538 2.2e-26 123.6 287 35.5
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 2.2e-26 123.6 237 41.8
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 2.9e-26 123.2 256 36.7
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 2.9e-26 123.2 263 37.6
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.9e-26 123.2 263 38.8
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.9e-26 123.2 263 38.8
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 3.8e-26 122.9 272 36.8
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 5.0e-26 122.5 240 37.9
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 6.5e-26 122.1 262 36.6
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 8.5e-26 121.7 294 34.4
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 3.2e-25 119.8 277 36.1
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 5.5e-25 119.0 267 33.7
Duzib106G1725 Durio zibethinus HOM05D004075 ORTHO05D004538 5.5e-25 119.0 240 37.5
Manes.08G048400 Manihot esculenta HOM05D004075 ORTHO05D004538 7.2e-25 118.6 234 38.0
Thecc.05G162200 Theobroma cacao HOM05D004075 ORTHO05D004538 7.2e-25 118.6 254 37.8
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 9.4e-25 118.2 243 38.3
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 1.6e-24 117.5 256 37.1
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 1.6e-24 117.5 255 35.7
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 2.7e-24 116.7 236 39.4
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 1.0e-23 114.8 272 36.8
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 1.0e-23 114.8 272 36.8
Duzib093G1674 Durio zibethinus HOM05D004075 ORTHO05D004538 1.0e-23 114.8 198 39.4
Cfa016858 Carpinus fangiana HOM05D004075 ORTHO05D004538 1.4e-23 114.4 255 34.1
Haze_03220 Corylus avellana HOM05D004075 ORTHO05D004538 1.4e-23 114.4 268 36.2
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 1.8e-23 114.0 260 33.8
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 2.3e-23 113.6 274 35.4
Haze_19908 Corylus avellana HOM05D004075 ORTHO05D004538 2.3e-23 113.6 240 35.8
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 3.0e-23 113.2 259 34.4
Dinv18084 Davidia involucrata HOM05D004075 ORTHO05D004538 3.0e-23 113.2 208 42.3
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 3.0e-23 113.2 280 33.6
Haze_02822 Corylus avellana HOM05D004075 ORTHO05D004538 6.8e-23 112.1 270 37.0
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 8.8e-23 111.7 292 34.9
MD12G1066800 Malus domestica HOM05D004075 ORTHO05D004538 1.2e-22 111.3 209 41.6
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 2.6e-22 110.2 277 33.9
MELO3C023547.2 Cucumis melo HOM05D004075 ORTHO05D004538 4.4e-22 109.4 248 33.9
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 4.4e-22 109.4 203 37.9
Psat0s1894g0080 Pisum sativum HOM05D004075 ORTHO05D004538 5.7e-22 109.0 203 41.9
Prupe.7G067300 Prunus persica HOM05D004075 ORTHO05D004538 5.7e-22 109.0 215 40.0
ATR0605G345 Amborella trichopoda HOM05D004075 ORTHO05D004538 1.3e-21 107.8 210 36.2
COL.COLO4_28674 Corchorus olitorius HOM05D004075 ORTHO05D004538 1.7e-21 107.5 243 34.2
VMungo1383G2046 Vigna mungo HOM05D004075 ORTHO05D004538 1.7e-21 107.5 211 37.0
Peaxi162Scf00337g00818 Petunia axillaris HOM05D004075 ORTHO05D004538 2.2e-21 107.1 202 37.1
Potri.006G054900 Populus trichocarpa HOM05D004075 ORTHO05D004538 3.7e-21 106.3 244 34.0
Medtr7g092270 Medicago truncatula HOM05D004075 ORTHO05D004538 8.3e-21 105.1 210 38.1
HPP92_020393 Vanilla planifolia HOM05D004075 ORTHO05D004538 1.4e-20 104.4 246 33.7
CANSAT80G1662 Cannabis sativa HOM05D004075 ORTHO05D004538 1.8e-20 104.0 192 37.5
Glyma.03G139500 Glycine max HOM05D004075 ORTHO05D004538 4.1e-20 102.8 211 35.5
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 4.1e-20 102.8 283 34.3
TPR.G3891 Trifolium pratense HOM05D004075 ORTHO05D004538 5.4e-20 102.4 211 37.0
Lalb_Chr25g0287431 Lupinus albus HOM05D004075 ORTHO05D004538 9.1e-20 101.7 268 34.0
QL07p021680 Quercus lobata HOM05D004075 ORTHO05D004538 1.2e-19 101.3 215 36.3
Ca_08481_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.7e-19 100.1 212 34.4
Atru.chr1.1036 Acer truncatum HOM05D004075 ORTHO05D004538 4.5e-19 99.4 203 38.4
unitig_578.g16697 Utricularia gibba HOM05D004075 ORTHO05D004538 5.9e-19 99.0 248 32.3
Phvul.001G136500 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 7.7e-19 98.6 235 34.0
EL10Ac2g04319 Beta vulgaris HOM05D004075 ORTHO05D004538 1.0e-18 98.2 279 33.3
Lj1g0004317 Lotus japonicus HOM05D004075 ORTHO05D004538 1.0e-18 98.2 246 35.4
Zm00001eb005640 Zea mays HOM05D004075 ORTHO05D004538 5.0e-18 95.9 220 34.5
CiPaw.10G031200 Carya illinoinensis HOM05D004075 ORTHO05D004538 6.6e-18 95.5 258 31.0
Aqoxy2G00118 Aquilegia oxysepala HOM05D004075 ORTHO05D004538 4.2e-17 92.8 287 30.7
FAN09G1122 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.4e-15 87.8 235 32.3
RcHm_v2.0_Chr3g0481111 Rosa chinensis HOM05D004075 ORTHO05D004538 3.0e-15 86.7 238 32.4
Zm00001eb402070 Zea mays HOM05D004075 ORTHO05D004538 4.0e-15 86.3 286 31.1
FAN02G0713 Fragaria x ananassa HOM05D004075 ORTHO05D004538 8.9e-15 85.1 244 32.4
CDE10G0025 Ceratophyllum demersum HOM05D004075 ORTHO05D004538 1.2e-14 84.7 261 31.0
Ah.10g038860 Amaranthus hybridus HOM05D004075 ORTHO05D004538 9.8e-14 81.6 243 29.6
Os03g0174200 Oryza sativa ssp. japonica HOM05D004075 ORTHO05D004538 1.7e-13 80.9 295 28.5
SEGI_00378 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.4e-12 75.9 137 35.0
SEGI_33290 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.9e-11 72.4 139 36.7
SEGI_02901 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.0e-10 69.3 138 35.5
SEGI_25355 Sequoiadendron giganteum HOM05D000006 ORTHO05D004538 5.0e-10 69.3 138 35.5
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 5.6e-09 65.9 116 40.5
SEGI_06755 Sequoiadendron giganteum HOM05D004075 ORTHO05D004538 5.6e-09 65.9 131 35.1
Sabra16G0056300 Salix brachista HOM05D004075 ORTHO05D004538 1.6e-08 64.3 91 38.5
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 3.6e-08 63.2 108 41.7
Atru.chr2.310 Acer truncatum HOM05D004075 ORTHO05D004538 8.9e-07 58.5 147 36.7


User provided reference genes

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