Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.6e-100 369.4 181 100.0
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 1.0e-43 180.6 172 61.0
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 6.8e-43 177.9 182 53.3
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.4e-42 175.6 185 54.1
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 2.8e-41 172.6 177 54.8
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 2.5e-37 159.5 175 53.7
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 6.0e-31 138.3 189 49.2
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 1.7e-30 136.7 178 48.9
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.3e-30 136.3 182 46.2
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.9e-29 133.3 184 44.6
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.5e-29 132.9 181 47.5
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.5e-29 132.9 179 47.5
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 2.5e-29 132.9 183 46.4
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 1.2e-28 130.6 184 48.4
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 2.1e-28 129.8 184 45.1
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 2.1e-28 129.8 179 48.0
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 3.6e-28 129.0 179 49.7
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 4.7e-28 128.6 189 47.6
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 8.0e-28 127.9 192 46.4
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.4e-27 127.1 183 46.4
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 1.4e-27 127.1 184 46.2
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 3.1e-27 125.9 192 47.9
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 3.1e-27 125.9 182 45.6
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 4.0e-27 125.6 183 49.7
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 8.9e-27 124.4 192 44.3
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 1.5e-26 123.6 183 47.5
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 2.0e-26 123.2 183 46.4
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 2.6e-26 122.9 184 44.0
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 7.5e-26 121.3 191 44.5
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 1.3e-25 120.6 193 44.6
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.3e-25 120.6 191 41.4
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.3e-25 120.6 188 44.7
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.7e-25 120.2 191 41.4
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 1.7e-25 120.2 191 41.4
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.2e-25 119.8 188 45.7
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 3.7e-25 119.0 189 43.9
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 3.7e-25 119.0 158 47.5
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.9e-25 118.6 198 41.9
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 4.9e-25 118.6 191 41.4
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 4.9e-25 118.6 200 40.0
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 6.4e-25 118.2 186 43.5
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 1.1e-24 117.5 186 44.1
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 1.9e-24 116.7 160 48.1
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.9e-24 116.7 201 42.3
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 4.1e-24 115.5 188 41.0
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 5.4e-24 115.2 185 47.0
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 7.0e-24 114.8 135 49.6
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.0e-24 114.8 187 43.3
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 7.0e-24 114.8 206 41.3
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 9.2e-24 114.4 200 39.5
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 9.2e-24 114.4 187 43.3
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 9.2e-24 114.4 188 42.6
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.2e-23 114.0 191 42.4
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 1.6e-23 113.6 185 41.1
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 1.6e-23 113.6 187 42.2
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 2.1e-23 113.2 189 41.3
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 2.7e-23 112.8 189 43.9
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 3.5e-23 112.5 181 42.0
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 3.5e-23 112.5 136 48.5
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 3.5e-23 112.5 199 42.2
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 4.6e-23 112.1 181 43.1
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 6.0e-23 111.7 200 39.5
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 1.0e-22 110.9 196 40.3
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.0e-22 110.9 196 40.3
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.0e-22 110.9 196 40.3
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.3e-22 110.5 174 41.4
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 3.0e-22 109.4 189 40.2
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 3.9e-22 109.0 174 40.2
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 3.9e-22 109.0 179 41.3
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 5.1e-22 108.6 203 40.9
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 5.1e-22 108.6 190 42.6
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 6.6e-22 108.2 187 42.2
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 8.6e-22 107.8 153 46.4
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 1.1e-21 107.5 204 40.2
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 2.5e-21 106.3 194 40.7
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.5e-21 106.3 184 42.9
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 3.3e-21 105.9 194 39.2
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 3.3e-21 105.9 195 37.9
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 4.3e-21 105.5 190 42.1
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 5.6e-21 105.1 186 41.4
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 7.3e-21 104.8 180 40.0
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 1.2e-20 104.0 185 40.5
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 1.2e-20 104.0 186 42.5
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.2e-20 104.0 160 45.6
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.6e-20 103.6 177 42.4
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.6e-20 103.6 205 40.5
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 1.6e-20 103.6 185 41.6
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 2.1e-20 103.2 193 42.0
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 2.1e-20 103.2 165 45.5
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 2.8e-20 102.8 190 41.1
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 2.8e-20 102.8 211 38.9
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 2.8e-20 102.8 183 44.3
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 3.6e-20 102.4 185 42.7
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.6e-20 102.4 179 43.0
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 3.6e-20 102.4 179 43.0
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 6.2e-20 101.7 177 41.2
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 6.2e-20 101.7 152 43.4
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 6.2e-20 101.7 182 43.4
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 1.1e-19 100.9 189 43.9
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 3.1e-19 99.4 187 42.2
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 3.1e-19 99.4 188 39.4
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 3.1e-19 99.4 122 48.4
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 4.0e-19 99.0 182 41.2
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 5.2e-19 98.6 179 39.1
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 5.2e-19 98.6 178 38.2
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 6.8e-19 98.2 190 40.5
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 8.9e-19 97.8 177 39.0
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 8.9e-19 97.8 175 38.9
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 8.9e-19 97.8 123 48.8
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 8.9e-19 97.8 114 50.9
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 1.2e-18 97.4 183 38.3
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.0e-18 96.7 198 39.4
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 3.4e-18 95.9 193 39.9
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 4.4e-18 95.5 177 39.0
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 4.4e-18 95.5 173 38.2
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 5.8e-18 95.1 173 37.0
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 5.8e-18 95.1 190 37.4
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 7.5e-18 94.7 184 36.4
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 9.9e-18 94.4 185 37.3
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 9.9e-18 94.4 190 36.8
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.3e-17 94.0 203 37.9
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 1.7e-17 93.6 173 38.7
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 2.2e-17 93.2 190 39.5
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 2.2e-17 93.2 197 37.6
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 3.7e-17 92.4 177 38.4
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 3.7e-17 92.4 188 37.2
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 4.9e-17 92.0 187 36.9
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 4.9e-17 92.0 177 37.3
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 4.9e-17 92.0 168 38.7
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 4.9e-17 92.0 195 37.4
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 4.9e-17 92.0 182 39.0
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 6.4e-17 91.7 188 36.7
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 8.3e-17 91.3 149 43.6
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 8.3e-17 91.3 133 43.6
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 8.3e-17 91.3 195 37.4
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 1.1e-16 90.9 147 44.2
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.1e-16 90.9 188 37.8
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 1.4e-16 90.5 221 34.8
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 1.9e-16 90.1 176 36.9
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 3.2e-16 89.4 123 46.3
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 7.1e-16 88.2 137 40.9
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.2e-15 87.4 188 34.6
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.6e-15 87.0 204 39.2
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 2.1e-15 86.7 169 37.3
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.1e-15 86.7 137 40.9
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 2.7e-15 86.3 183 38.3
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 4.6e-15 85.5 201 33.8
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 7.8e-15 84.7 176 37.5
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 7.8e-15 84.7 180 37.8
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.0e-14 84.3 155 40.0
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.3e-14 83.2 188 33.0
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.0e-14 82.8 196 32.7
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 8.6e-14 81.3 183 34.4
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.5e-13 80.5 196 33.2
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 1.9e-13 80.1 136 39.7
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 2.5e-13 79.7 169 35.5
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 5.6e-13 78.6 129 41.9
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 2.1e-12 76.6 187 32.6
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.1e-12 76.6 209 30.6
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 2.8e-12 76.3 181 37.6
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.8e-12 76.3 112 41.1
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 4.7e-12 75.5 187 32.6
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 2.6e-10 69.7 196 34.2
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 3.4e-10 69.3 267 28.8
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-09 67.4 196 29.6
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 1.3e-09 67.4 188 31.9
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 1.3e-09 67.4 196 29.6
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 1.3e-09 67.4 194 33.0
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 1.7e-09 67.0 189 31.7
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 1.7e-09 67.0 197 29.4
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 3.8e-09 65.9 189 31.2
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 4.9e-09 65.5 186 32.8
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 6.4e-09 65.1 160 33.1
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 3.2e-08 62.8 108 40.7
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 5.4e-08 62.0 68 52.9
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 5.4e-08 62.0 184 32.1
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 9.3e-08 61.2 152 32.2
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 1.2e-07 60.8 184 32.1
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.6e-07 60.5 184 30.4
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 4.6e-07 58.9 160 33.8
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 1.7e-06 57.0 208 31.7


User provided reference genes

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