Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G0947 Erigeron canadensis HOM05D002934 ORTHO05D187088 1.5e-43 179.1 88 100.0
ECA248G1862 Erigeron canadensis HOM05D002934 ORTHO05D003937 8.5e-15 83.6 98 52.0
HanXRQChr10g0286701 Helianthus annuus HOM05D002934 ORTHO05D003937 2.7e-13 78.6 95 50.5
HanXRQChr01g0000311 Helianthus annuus HOM05D002934 ORTHO05D003937 4.6e-13 77.8 95 49.5
HanXRQChr11g0329261 Helianthus annuus HOM05D002934 ORTHO05D003937 2.3e-12 75.5 95 48.4
Oeu051396.1 Olea europaea HOM05D002934 ORTHO05D003937 2.3e-12 75.5 95 47.4
Lsat_1_v5_gn_8_108400 Lactuca sativa HOM05D002934 ORTHO05D003937 3.0e-12 75.1 98 46.9
Sc02g0000080 Simmondsia chinensis HOM05D002934 ORTHO05D003937 3.0e-12 75.1 95 48.4
Sc20g0007380 Simmondsia chinensis HOM05D002934 ORTHO05D003937 3.9e-12 74.7 95 47.4
Sc20g0007500 Simmondsia chinensis HOM05D002934 ORTHO05D003937 3.9e-12 74.7 95 47.4
MSTRG.14890 Avicennia marina HOM05D002934 ORTHO05D003937 5.1e-12 74.3 95 47.4
HanXRQChr15g0464621 Helianthus annuus HOM05D002934 ORTHO05D003937 5.1e-12 74.3 95 48.4
Lsat_1_v5_gn_9_40081 Lactuca sativa HOM05D002934 ORTHO05D003937 5.1e-12 74.3 98 45.9
Manes.09G120000 Manihot esculenta HOM05D002934 ORTHO05D003937 6.7e-12 73.9 95 47.4
ECA247G2872 Erigeron canadensis HOM05D002934 ORTHO05D003937 8.8e-12 73.6 98 46.9
Oeu003104.3 Olea europaea HOM05D002934 ORTHO05D003937 8.8e-12 73.6 95 47.4
Actinidia07503 Actinidia chinensis HOM05D002934 ORTHO05D003937 1.5e-11 72.8 95 45.3
BcaC05g29595 Brassica carinata HOM05D002934 ORTHO05D003937 1.5e-11 72.8 95 47.4
A05p40190 Brassica napus HOM05D002934 ORTHO05D003937 1.5e-11 72.8 95 47.4
C05p59270 Brassica napus HOM05D002934 ORTHO05D003937 1.5e-11 72.8 95 47.4
BolC5t34570H Brassica oleracea HOM05D002934 ORTHO05D003937 1.5e-11 72.8 95 47.4
ClCG04G005090 Citrullus lanatus HOM05D002934 ORTHO05D003937 1.5e-11 72.8 95 46.3
Ciclev10011402m.g Citrus clementina HOM05D002934 ORTHO05D003937 1.5e-11 72.8 95 45.3
Hund14946 Selenicereus undatus HOM05D002934 ORTHO05D003937 1.5e-11 72.8 98 45.9
HPP92_022876 Vanilla planifolia HOM05D002934 ORTHO05D003937 1.5e-11 72.8 95 46.3
Nitab4.5_0006644g0030 Nicotiana tabacum HOM05D002934 ORTHO05D003937 2.0e-11 72.4 95 47.4
Nitab4.5_0008321g0010 Nicotiana tabacum HOM05D002934 ORTHO05D003937 2.0e-11 72.4 95 47.4
Peaxi162Scf00359g01222 Petunia axillaris HOM05D002934 ORTHO05D003937 2.0e-11 72.4 95 47.4
SGA_v2.0_scaffold159G37538 Striga asiatica HOM05D002934 ORTHO05D003937 2.0e-11 72.4 95 46.3
TWI74G1089 Tripterygium wilfordii HOM05D002934 ORTHO05D003937 2.0e-11 72.4 95 46.3
AL1G20330 Arabidopsis lyrata HOM05D002934 ORTHO05D003937 2.5e-11 72.0 95 46.3
AT1G09780 Arabidopsis thaliana HOM05D002934 ORTHO05D003937 2.5e-11 72.0 95 46.3
A08p34340 Brassica napus HOM05D002934 ORTHO05D003937 2.5e-11 72.0 95 46.3
BraA08t35346Z Brassica rapa HOM05D002934 ORTHO05D003937 2.5e-11 72.0 95 46.3
Carub.0001s0912 Capsella rubella HOM05D002934 ORTHO05D003937 2.5e-11 72.0 95 46.3
CARHR009750 Cardamine hirsuta HOM05D002934 ORTHO05D003937 2.5e-11 72.0 95 46.3
Eucgr.K01314 Eucalyptus grandis HOM05D002934 ORTHO05D003937 2.5e-11 72.0 95 45.3
Thhalv10007256m.g Eutrema salsugineum HOM05D002934 ORTHO05D003937 2.5e-11 72.0 95 46.3
Potri.016G142900 Populus trichocarpa HOM05D002934 ORTHO05D003937 2.5e-11 72.0 95 45.3
Sabra04G0158900 Salix brachista HOM05D002934 ORTHO05D003937 2.5e-11 72.0 95 45.3
Sp1g08370 Schrenkiella parvula HOM05D002934 ORTHO05D003937 2.5e-11 72.0 95 46.3
Cc05_g00860 Coffea canephora HOM05D002934 ORTHO05D003937 3.3e-11 71.6 95 46.3
Hma1.2p1_1020F.1_g248460 Hydrangea macrophylla HOM05D002934 ORTHO05D003937 3.3e-11 71.6 95 46.3
Lj2C54T9 Lonicera japonica HOM05D002934 ORTHO05D003937 3.3e-11 71.6 98 44.9
Manes.08G166700 Manihot esculenta HOM05D002934 ORTHO05D003937 3.3e-11 71.6 95 45.3
PGSC0003DMG400000935 Solanum tuberosum HOM05D002934 ORTHO05D003937 3.3e-11 71.6 98 43.9
SGA_v2.0_scaffold181G39723 Striga asiatica HOM05D002934 ORTHO05D003937 3.3e-11 71.6 98 44.9
SGA_v2.0_scaffold181G39730 Striga asiatica HOM05D002934 ORTHO05D003937 3.3e-11 71.6 98 44.9
Dinv16924 Davidia involucrata HOM05D002934 ORTHO05D003937 5.7e-11 70.9 100 44.0
Actinidia12530 Actinidia chinensis HOM05D002934 ORTHO05D003937 7.4e-11 70.5 95 44.2
Prupe.6G300000 Prunus persica HOM05D002934 ORTHO05D003937 7.4e-11 70.5 95 43.2
MELO3C025275.2 Cucumis melo HOM05D002934 ORTHO05D003937 9.7e-11 70.1 95 45.3
Eucgr.A00868 Eucalyptus grandis HOM05D002934 ORTHO05D003937 9.7e-11 70.1 95 45.3
PGR004G0010 Punica granatum HOM05D002934 ORTHO05D003937 9.7e-11 70.1 95 45.3
Sp3g07040 Schrenkiella parvula HOM05D002934 ORTHO05D003937 9.7e-11 70.1 95 45.3
C08p13190 Brassica napus HOM05D002934 ORTHO05D003937 1.3e-10 69.7 95 45.3
BolC8t48948H Brassica oleracea HOM05D002934 ORTHO05D003937 1.3e-10 69.7 95 45.3
Gohir.D02G010600 Gossypium hirsutum HOM05D002934 ORTHO05D003937 1.3e-10 69.7 95 48.4
Gorai.005G012900 Gossypium raimondii HOM05D002934 ORTHO05D003937 1.3e-10 69.7 95 48.4
MD12G1195300 Malus domestica HOM05D002934 ORTHO05D003937 1.3e-10 69.7 95 46.3
Solyc07g044840.3 Solanum lycopersicum HOM05D002934 ORTHO05D003937 1.3e-10 69.7 95 45.3
Sopen07g023400 Solanum pennellii HOM05D002934 ORTHO05D003937 1.3e-10 69.7 95 45.3
Actinidia22461 Actinidia chinensis HOM05D002934 ORTHO05D003937 1.7e-10 69.3 98 43.9
Aa31LG1G5200 Aethionema arabicum HOM05D002934 ORTHO05D003937 1.7e-10 69.3 95 45.3
Aa31LG1G5210 Aethionema arabicum HOM05D002934 ORTHO05D003937 1.7e-10 69.3 95 45.3
arahy.Tifrunner.gnm1.ann1.6MS3W4 Arachis hypogaea HOM05D002934 ORTHO05D003937 1.7e-10 69.3 100 43.0
arahy.Tifrunner.gnm1.ann1.TG142F Arachis hypogaea HOM05D002934 ORTHO05D003937 1.7e-10 69.3 100 43.0
Cpa.g.sc9.169 Carica papaya HOM05D002934 ORTHO05D003937 1.7e-10 69.3 95 45.3
AUR62029818 Chenopodium quinoa HOM05D002934 ORTHO05D003937 1.7e-10 69.3 95 45.3
Oeu033549.1 Olea europaea HOM05D002934 ORTHO05D003937 1.7e-10 69.3 95 45.3
MD04G1180100 Malus domestica HOM05D002934 ORTHO05D003937 2.2e-10 68.9 98 42.9
Sabra06G0088200 Salix brachista HOM05D002934 ORTHO05D003937 2.2e-10 68.9 95 45.3
SEGI_06068 Sequoiadendron giganteum HOM05D002934 ORTHO05D003937 2.2e-10 68.9 95 45.3
AL3G19560 Arabidopsis lyrata HOM05D002934 ORTHO05D003937 2.8e-10 68.6 95 45.3
AT3G08590 Arabidopsis thaliana HOM05D002934 ORTHO05D003937 2.8e-10 68.6 95 45.3
EL10Ac7g17147 Beta vulgaris HOM05D002934 ORTHO05D003937 2.8e-10 68.6 98 44.9
Carub.0003s0772 Capsella rubella HOM05D002934 ORTHO05D003937 2.8e-10 68.6 95 45.3
CARHR082890 Cardamine hirsuta HOM05D002934 ORTHO05D003937 2.8e-10 68.6 95 45.3
CiPaw.10G167100 Carya illinoinensis HOM05D002934 ORTHO05D003937 2.8e-10 68.6 95 44.2
AUR62006462 Chenopodium quinoa HOM05D002934 ORTHO05D003937 2.8e-10 68.6 95 44.2
Ca_07804_v3 Cicer arietinum L. HOM05D002934 ORTHO05D003937 2.8e-10 68.6 100 43.0
EL10Ac1g00002 Beta vulgaris HOM05D002934 ORTHO05D003937 3.7e-10 68.2 103 43.7
CsaV3_4G013550 Cucumis sativus L. HOM05D002934 ORTHO05D003937 3.7e-10 68.2 95 44.2
Atru.chr8.38 Acer truncatum HOM05D002934 ORTHO05D003937 4.8e-10 67.8 95 44.2
CAN.G212.1 Capsicum annuum HOM05D002934 ORTHO05D003937 4.8e-10 67.8 95 45.3
Rhsim12G0013400 Rhododendron simsii HOM05D002934 ORTHO05D003937 4.8e-10 67.8 95 43.2
HPP92_028104 Vanilla planifolia HOM05D002934 ORTHO05D003937 4.8e-10 67.8 95 44.2
THA.LOC104799818 Tarenaya hassleriana HOM05D002934 ORTHO05D003937 6.3e-10 67.4 95 43.2
GSVIVG01029842001 Vitis vinifera HOM05D002934 ORTHO05D003937 6.3e-10 67.4 95 44.2
Zm00001eb149730 Zea mays HOM05D002934 ORTHO05D003937 6.3e-10 67.4 98 42.9
Duzib151G0059 Durio zibethinus HOM05D002934 ORTHO05D003937 8.2e-10 67.0 95 46.3
Gohir.A02G010300 Gossypium hirsutum HOM05D002934 ORTHO05D003937 8.2e-10 67.0 95 46.3
Lj1C638T10 Lonicera japonica HOM05D002934 ORTHO05D003937 8.2e-10 67.0 95 43.2
Thecc.04G170500 Theobroma cacao HOM05D002934 ORTHO05D003937 8.2e-10 67.0 95 46.3
Dinv20232 Davidia involucrata HOM05D002934 ORTHO05D003937 1.1e-09 66.6 95 43.2
Os03g0330200 Oryza sativa ssp. japonica HOM05D002934 ORTHO05D003937 1.1e-09 66.6 95 43.2
TAR369G0645 Trochodendron aralioides HOM05D002934 ORTHO05D003937 1.4e-09 66.2 95 43.2
Zm00001eb368990 Zea mays HOM05D002934 ORTHO05D003937 1.4e-09 66.2 98 41.8
Aqoxy2G00661 Aquilegia oxysepala HOM05D002934 ORTHO05D003937 1.8e-09 65.9 95 42.1
Aqoxy4G01987 Aquilegia oxysepala HOM05D002934 ORTHO05D003937 1.8e-09 65.9 95 42.1
Medtr7g074570 Medicago truncatula HOM05D002934 ORTHO05D003937 1.8e-09 65.9 100 41.0
Os05g0482700 Oryza sativa ssp. japonica HOM05D002934 ORTHO05D003937 1.8e-09 65.9 102 42.2
QL07p030511 Quercus lobata HOM05D002934 ORTHO05D003937 1.8e-09 65.9 95 43.2
QL07p031542 Quercus lobata HOM05D002934 ORTHO05D003937 1.8e-09 65.9 95 43.2
RcHm_v2.0_Chr3g0459381 Rosa chinensis HOM05D002934 ORTHO05D003937 1.8e-09 65.9 95 43.2
unitig_62.g23250 Utricularia gibba HOM05D002934 ORTHO05D003937 1.8e-09 65.9 95 45.3
Migut.H01273 Erythranthe guttata HOM05D002934 ORTHO05D003937 2.4e-09 65.5 95 43.2
Glyma.09G270500 Glycine max HOM05D002934 ORTHO05D003937 2.4e-09 65.5 100 42.0
Glyma.18G219100 Glycine max HOM05D002934 ORTHO05D003937 2.4e-09 65.5 100 42.0
Duzib212G0650 Durio zibethinus HOM05D002934 ORTHO05D003937 3.1e-09 65.1 95 45.3
Gohir.A02G092100 Gossypium hirsutum HOM05D002934 ORTHO05D003937 3.1e-09 65.1 95 45.3
Gorai.005G125000 Gossypium raimondii HOM05D002934 ORTHO05D003937 3.1e-09 65.1 95 45.3
Potri.006G113300 Populus trichocarpa HOM05D002934 ORTHO05D003937 3.1e-09 65.1 95 43.2
VMungo1383G2740 Vigna mungo HOM05D002934 ORTHO05D003937 3.1e-09 65.1 100 42.0
CSS0038234 Camellia sinensis var. sinensis HOM05D002934 ORTHO05D003937 4.1e-09 64.7 95 45.3
COL.COLO4_15321 Corchorus olitorius HOM05D002934 ORTHO05D003937 4.1e-09 64.7 95 46.3
Sed0001902 Sechium edule HOM05D002934 ORTHO05D003937 4.1e-09 64.7 95 43.2
Actinidia11471 Actinidia chinensis HOM05D002934 ORTHO05D003937 5.3e-09 64.3 95 42.1
CSS0023901 Camellia sinensis var. sinensis HOM05D002934 ORTHO05D003937 5.3e-09 64.3 95 42.1
CSS0033821 Camellia sinensis var. sinensis HOM05D002934 ORTHO05D003937 5.3e-09 64.3 95 42.1
Haze_21221 Corylus avellana HOM05D002934 ORTHO05D003937 5.3e-09 64.3 95 42.1
DCAR_013327 Daucus carota HOM05D002934 ORTHO05D003937 5.3e-09 64.3 95 41.1
Ah.01g006180 Amaranthus hybridus HOM05D002934 ORTHO05D003937 6.9e-09 63.9 98 41.8
Thhalv10020418m.g Eutrema salsugineum HOM05D002934 ORTHO05D003937 6.9e-09 63.9 95 43.2
FvH4_6g09180 Fragaria vesca HOM05D002934 ORTHO05D003937 6.9e-09 63.9 95 42.1
FAN02G1856 Fragaria x ananassa HOM05D002934 ORTHO05D003937 6.9e-09 63.9 95 42.1
FAN09G0756 Fragaria x ananassa HOM05D002934 ORTHO05D003937 6.9e-09 63.9 95 42.1
FAN14G3266 Fragaria x ananassa HOM05D002934 ORTHO05D003937 6.9e-09 63.9 95 42.1
Lj1g0025652 Lotus japonicus HOM05D002934 ORTHO05D003937 6.9e-09 63.9 100 41.0
PSO339G4103 Papaver somniferum HOM05D002934 ORTHO05D003937 6.9e-09 63.9 95 41.1
COL.COLO4_21259 Corchorus olitorius HOM05D002934 ORTHO05D003937 9.1e-09 63.5 95 45.3
Hund20698 Selenicereus undatus HOM05D002934 ORTHO05D003937 9.1e-09 63.5 95 42.1
TAR633G1746 Trochodendron aralioides HOM05D002934 ORTHO05D003937 9.1e-09 63.5 95 42.1
CDE06G0641 Ceratophyllum demersum HOM05D002934 ORTHO05D003937 1.2e-08 63.2 103 37.9
unitig_52.g17320 Utricularia gibba HOM05D002934 ORTHO05D003937 1.2e-08 63.2 95 45.3
Ah.03g138170 Amaranthus hybridus HOM05D002934 ORTHO05D003937 1.5e-08 62.8 100 42.0
Gohir.D02G108700 Gossypium hirsutum HOM05D002934 ORTHO05D003937 1.5e-08 62.8 95 44.2
Gohir.D10G125400 Gossypium hirsutum HOM05D002934 ORTHO05D003937 1.5e-08 62.8 95 45.3
Gorai.011G138400 Gossypium raimondii HOM05D002934 ORTHO05D003937 1.5e-08 62.8 95 45.3
Rhsim05G0234700 Rhododendron simsii HOM05D002934 ORTHO05D003937 1.5e-08 62.8 95 40.0
Cfa016986 Carpinus fangiana HOM05D002934 ORTHO05D003937 2.0e-08 62.4 95 40.0
DCAR_023040 Daucus carota HOM05D002934 ORTHO05D003937 2.0e-08 62.4 95 42.1
Os01g0817700 Oryza sativa ssp. japonica HOM05D002934 ORTHO05D003937 2.0e-08 62.4 95 42.1
PGR031G1733 Punica granatum HOM05D002934 ORTHO05D003937 2.0e-08 62.4 95 44.2
Phvul.008G077900 Phaseolus vulgaris HOM05D002934 ORTHO05D003937 2.6e-08 62.0 100 41.0
ATR1127G201 Amborella trichopoda HOM05D002934 ORTHO05D003937 3.4e-08 61.6 95 41.1
Lalb_Chr13g0290291 Lupinus albus HOM05D002934 ORTHO05D003937 4.5e-08 61.2 102 40.2
MBI15_g05581_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 4.5e-08 61.2 95 42.1
CDE07G1774 Ceratophyllum demersum HOM05D002934 ORTHO05D003937 5.9e-08 60.8 95 38.9
PSO384G1474 Papaver somniferum HOM05D002934 ORTHO05D003937 5.9e-08 60.8 95 40.0
Lj3g0015503 Lotus japonicus HOM05D002934 ORTHO05D003937 1.0e-07 60.1 94 40.4
Psat1g024760 Pisum sativum HOM05D002934 ORTHO05D003937 1.0e-07 60.1 100 39.0
TPR.G3169 Trifolium pratense HOM05D002934 ORTHO05D003937 1.0e-07 60.1 100 40.0
Eucgr.A00869 Eucalyptus grandis HOM05D002934 ORTHO05D003937 2.2e-07 58.9 95 40.0
Mapoly0085s0094 Marchantia polymorpha HOM05D002934 ORTHO05D003937 5.0e-07 57.8 97 40.2
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 4.2e-06 54.7 87 39.1
Nn5g26748 Nelumbo nucifera HOM05D002934 ORTHO05D003937 9.4e-06 53.5 62 46.8
Zm00001eb281930 Zea mays HOM05D002934 ORTHO05D003937 9.4e-06 53.5 85 41.2


User provided reference genes

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