Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 5.3e-176 620.9 317 100.0
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 5.6e-125 451.4 256 84.0
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 3.9e-118 428.7 256 82.0
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 2.4e-99 366.3 329 59.3
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 1.0e-86 324.3 250 62.8
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 3.6e-84 315.8 250 62.8
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 3.6e-84 315.8 256 61.3
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 1.4e-83 313.9 251 62.9
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.4e-83 313.2 250 60.8
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 2.4e-83 313.2 250 60.8
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 3.1e-83 312.8 250 61.2
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 6.9e-83 311.6 250 60.8
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 9.0e-83 311.2 302 54.6
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 1.2e-82 310.8 280 56.1
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 4.5e-82 308.9 250 60.0
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.5e-82 308.9 250 60.0
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 4.5e-82 308.9 250 61.2
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 4.5e-82 308.9 250 60.4
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 5.8e-82 308.5 254 59.8
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 5.8e-82 308.5 250 60.4
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 7.6e-82 308.1 250 61.2
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.3e-81 307.4 245 61.2
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 1.3e-81 307.4 271 58.3
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 1.7e-81 307.0 250 59.6
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 2.2e-81 306.6 282 56.0
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 2.2e-81 306.6 256 58.6
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 2.2e-81 306.6 246 61.4
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 2.2e-81 306.6 246 61.4
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 2.9e-81 306.2 264 58.3
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 2.9e-81 306.2 288 53.1
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 3.8e-81 305.8 256 59.4
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 4.9e-81 305.4 256 59.4
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 6.4e-81 305.1 250 60.0
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 1.4e-80 303.9 255 58.0
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 1.4e-80 303.9 251 58.6
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 1.9e-80 303.5 250 58.8
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 2.4e-80 303.1 282 54.6
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 4.2e-80 302.4 245 61.6
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 4.2e-80 302.4 250 58.0
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 5.5e-80 302.0 290 56.2
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 1.2e-79 300.8 256 57.0
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 1.2e-79 300.8 254 57.5
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 1.6e-79 300.4 250 60.4
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.1e-79 300.1 250 59.2
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 3.5e-79 299.3 250 57.6
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 3.5e-79 299.3 277 54.9
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 4.6e-79 298.9 250 58.0
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 1.8e-78 297.0 264 57.6
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 1.8e-78 297.0 254 57.9
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 3.0e-78 296.2 245 60.8
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 5.1e-78 295.4 256 57.4
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 6.7e-78 295.0 250 60.8
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 6.7e-78 295.0 250 57.6
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 8.7e-78 294.7 289 53.3
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.1e-77 294.3 256 57.0
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 1.1e-77 294.3 250 58.4
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 1.1e-77 294.3 250 57.2
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 1.5e-77 293.9 313 49.8
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 1.9e-77 293.5 256 56.2
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.9e-77 293.5 262 57.3
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 2.5e-77 293.1 250 56.8
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 2.5e-77 293.1 250 56.8
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.5e-77 293.1 248 58.1
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 2.5e-77 293.1 248 58.1
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 2.5e-77 293.1 250 59.2
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 7.4e-77 291.6 246 61.0
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 9.6e-77 291.2 284 52.5
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.3e-76 290.8 290 52.4
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.3e-76 290.8 245 59.2
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 4.8e-76 288.9 256 55.9
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 6.2e-76 288.5 254 56.7
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 1.1e-75 287.7 289 52.9
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.4e-75 287.3 247 58.3
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 1.8e-75 287.0 301 50.2
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 3.1e-75 286.2 278 52.5
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 6.9e-75 285.0 278 52.2
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 6.9e-75 285.0 278 52.2
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 9.0e-75 284.6 251 57.4
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 1.2e-74 284.3 206 65.0
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 2.0e-74 283.5 245 57.6
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 4.5e-74 282.3 284 51.4
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 4.5e-74 282.3 284 51.8
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 4.5e-74 282.3 245 58.0
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 7.6e-74 281.6 276 52.9
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 2.2e-73 280.0 194 67.5
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.2e-73 280.0 212 63.7
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 2.2e-73 280.0 241 58.1
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 8.4e-73 278.1 250 56.4
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 1.1e-72 277.7 200 66.0
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 1.2e-71 274.2 313 47.6
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.5e-71 272.7 198 64.1
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.8e-70 270.4 281 50.9
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 1.8e-70 270.4 281 50.9
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 5.1e-70 268.9 198 64.6
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 8.7e-70 268.1 256 54.7
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 1.6e-68 263.8 207 63.3
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 6.3e-68 261.9 250 52.8
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 6.3e-68 261.9 246 54.1
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 8.2e-68 261.5 256 52.0
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 7.6e-66 255.0 246 51.6
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.8e-65 252.7 257 52.1
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 2.5e-64 250.0 288 47.9
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 1.8e-62 243.8 173 67.6
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 4.8e-60 235.7 258 49.2
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 6.9e-59 231.9 252 49.6
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.5e-58 230.7 250 47.2
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 9.4e-56 221.5 245 47.3
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 3.6e-55 219.5 275 48.4
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 2.0e-53 213.8 281 46.6
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.3e-52 211.1 256 45.7
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 3.7e-52 209.5 282 47.2
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.1e-51 208.0 278 42.8
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.8e-51 207.2 282 46.8
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 4.1e-51 206.1 283 46.3
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 9.1e-51 204.9 179 55.9
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 3.4e-50 203.0 141 62.4
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 3.4e-50 203.0 207 50.7
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.7e-49 200.7 284 45.8
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 2.2e-49 200.3 279 40.5
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 5.2e-46 189.1 271 45.8
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 6.7e-46 188.7 228 44.3
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 6.7e-46 188.7 343 36.4
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 7.4e-45 185.3 265 45.3
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.3e-44 184.5 136 61.0
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 1.1e-43 181.4 140 64.3
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 2.4e-43 180.3 156 59.0
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 1.6e-42 177.6 256 41.0
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 2.0e-42 177.2 256 44.9
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.7e-41 174.1 276 39.1
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 6.5e-41 172.2 247 37.7
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 3.6e-39 166.4 248 38.7
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.5e-37 161.0 271 38.4
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 2.8e-36 156.8 256 38.3
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.4e-30 137.9 216 41.7
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 1.2e-26 124.8 236 34.3
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 2.7e-26 123.6 141 44.0
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 6.5e-25 119.0 217 35.0
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 8.0e-23 112.1 106 50.9
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 1.4e-22 111.3 199 35.2
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 1.8e-22 110.9 220 34.5
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 2.0e-21 107.5 196 35.7
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 3.1e-19 100.1 161 39.1
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 1.6e-18 97.8 99 52.5
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 2.7e-18 97.1 307 27.4
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 8.6e-17 92.0 93 46.2
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 2.5e-16 90.5 64 62.5
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 1.5e-13 81.3 235 27.2
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 2.6e-13 80.5 240 30.4
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.2e-10 71.6 68 52.9
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.7e-09 67.8 246 26.4
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 8.6e-09 65.5 173 30.1
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 5.2e-06 56.2 207 29.0


User provided reference genes

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