Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G0603 Erigeron canadensis HOM05D004603 ORTHO05D005244 5.8e-64 247.3 116 100.0
ECA248G3322 Erigeron canadensis HOM05D004603 ORTHO05D005244 3.7e-26 121.7 79 75.9
HanXRQChr15g0493861 Helianthus annuus HOM05D004603 ORTHO05D005244 1.2e-24 116.7 81 71.6
Lj9A646T46 Lonicera japonica HOM05D004603 ORTHO05D005244 1.5e-22 109.8 89 59.6
Lj1A1244T16 Lonicera japonica HOM05D004603 ORTHO05D005244 7.2e-22 107.5 80 63.8
Dinv32050 Davidia involucrata HOM05D004603 ORTHO05D005244 1.2e-21 106.7 100 56.0
DCAR_031824 Daucus carota HOM05D004603 ORTHO05D005244 2.7e-21 105.5 80 66.2
PGR031G2747 Punica granatum HOM05D004603 ORTHO05D005244 1.0e-20 103.6 101 56.4
TAR053G0004 Trochodendron aralioides HOM05D004603 ORTHO05D005244 1.0e-20 103.6 83 62.7
TWI38G0287 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 2.3e-20 102.4 104 52.9
TAR369G0595 Trochodendron aralioides HOM05D004603 ORTHO05D005244 2.3e-20 102.4 81 61.7
CANSAT35G1099 Cannabis sativa HOM05D004603 ORTHO05D005244 1.5e-19 99.8 79 60.8
ClCG05G020790 Citrullus lanatus HOM05D004603 ORTHO05D005244 2.6e-19 99.0 87 59.8
SGA_v2.0_scaffold119G32802 Striga asiatica HOM05D004603 ORTHO05D005244 3.4e-19 98.6 85 52.9
arahy.Tifrunner.gnm1.ann1.S7XKIQ Arachis hypogaea HOM05D004603 ORTHO05D005244 4.4e-19 98.2 75 61.3
Ca_20912_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 7.5e-19 97.4 73 65.8
CAN.G745.15 Capsicum annuum HOM05D004603 ORTHO05D005244 9.7e-19 97.1 86 55.8
Potri.003G201500 Populus trichocarpa HOM05D004603 ORTHO05D005244 9.7e-19 97.1 99 53.5
Ca_14312_v3 Cicer arietinum L. HOM05D004603 ORTHO05D005244 1.3e-18 96.7 78 61.5
DCAR_009134 Daucus carota HOM05D004603 ORTHO05D005244 1.3e-18 96.7 79 62.0
Hma1.2p1_0902F.1_g234830 Hydrangea macrophylla HOM05D004603 ORTHO05D005244 1.3e-18 96.7 79 59.5
arahy.Tifrunner.gnm1.ann1.FEA8VP Arachis hypogaea HOM05D004603 ORTHO05D005244 1.7e-18 96.3 75 60.0
Duzib114G1022 Durio zibethinus HOM05D004603 ORTHO05D005244 1.7e-18 96.3 74 63.5
arahy.Tifrunner.gnm1.ann1.30UV9I Arachis hypogaea HOM05D004603 ORTHO05D005244 2.2e-18 95.9 75 60.0
CsaV3_5G036510 Cucumis sativus L. HOM05D004603 ORTHO05D005244 2.2e-18 95.9 85 58.8
Migut.B01205 Erythranthe guttata HOM05D004603 ORTHO05D005244 2.2e-18 95.9 83 53.0
Peaxi162Scf00309g00324 Petunia axillaris HOM05D004603 ORTHO05D005244 2.2e-18 95.9 84 56.0
GSVIVG01022405001 Vitis vinifera HOM05D004603 ORTHO05D005244 2.2e-18 95.9 79 62.0
MELO3C012448.2 Cucumis melo HOM05D004603 ORTHO05D005244 2.8e-18 95.5 84 57.1
VMungo1127G0155 Vigna mungo HOM05D004603 ORTHO05D005244 2.8e-18 95.5 74 63.5
Duzib128G1390 Durio zibethinus HOM05D004603 ORTHO05D005244 3.7e-18 95.1 74 63.5
Nitab4.5_0000316g0040 Nicotiana tabacum HOM05D004603 ORTHO05D005244 4.8e-18 94.7 79 57.0
TWI63G1183 Tripterygium wilfordii HOM05D004603 ORTHO05D005244 4.8e-18 94.7 103 49.5
Aqoxy2G00300 Aquilegia oxysepala HOM05D004603 ORTHO05D005244 6.3e-18 94.4 82 57.3
Sed0010230 Sechium edule HOM05D004603 ORTHO05D005244 6.3e-18 94.4 81 63.0
VMungo1127G1982 Vigna mungo HOM05D004603 ORTHO05D005244 6.3e-18 94.4 74 63.5
Cpa.g.sc197.6 Carica papaya HOM05D004603 ORTHO05D005244 8.3e-18 94.0 80 58.8
Lalb_Chr19g0138841 Lupinus albus HOM05D004603 ORTHO05D005244 8.3e-18 94.0 73 64.4
Phvul.010G125900 Phaseolus vulgaris HOM05D004603 ORTHO05D005244 8.3e-18 94.0 74 63.5
Actinidia30721 Actinidia chinensis HOM05D004603 ORTHO05D005244 1.1e-17 93.6 74 62.2
Glyma.12G039500 Glycine max HOM05D004603 ORTHO05D005244 1.4e-17 93.2 74 62.2
Peaxi162Scf00047g02136 Petunia axillaris HOM05D004603 ORTHO05D005244 1.4e-17 93.2 76 59.2
MSTRG.20534 Avicennia marina HOM05D004603 ORTHO05D005244 1.8e-17 92.8 76 55.3
DCAR_024211 Daucus carota HOM05D004603 ORTHO05D005244 1.8e-17 92.8 74 63.5
Eucgr.G03257 Eucalyptus grandis HOM05D004603 ORTHO05D005244 1.8e-17 92.8 84 54.8
FAN01G0231 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.8e-17 92.8 89 52.8
Manes.11G002700 Manihot esculenta HOM05D004603 ORTHO05D005244 1.8e-17 92.8 74 59.5
Sabra01G0018000 Salix brachista HOM05D004603 ORTHO05D005244 1.8e-17 92.8 74 59.5
CAN.G1571.2 Capsicum annuum HOM05D004603 ORTHO05D005244 2.4e-17 92.4 82 56.1
Sed0015753 Sechium edule HOM05D004603 ORTHO05D005244 2.4e-17 92.4 85 56.5
Thecc.10G006000 Theobroma cacao HOM05D004603 ORTHO05D005244 2.4e-17 92.4 73 64.4
Ciclev10032728m.g Citrus clementina HOM05D004603 ORTHO05D005244 3.1e-17 92.0 94 52.1
FvH4_5g29020 Fragaria vesca HOM05D004603 ORTHO05D005244 3.1e-17 92.0 71 60.6
Gohir.D04G071400 Gossypium hirsutum HOM05D004603 ORTHO05D005244 3.1e-17 92.0 74 59.5
Gorai.012G080400 Gossypium raimondii HOM05D004603 ORTHO05D005244 3.1e-17 92.0 74 59.5
Glyma.11G113600 Glycine max HOM05D004603 ORTHO05D005244 5.3e-17 91.3 103 49.5
MD02G1294600 Malus domestica HOM05D004603 ORTHO05D005244 5.3e-17 91.3 102 48.0
RcHm_v2.0_Chr1g0319701 Rosa chinensis HOM05D004603 ORTHO05D005244 5.3e-17 91.3 74 59.5
CiPaw.13G010800 Carya illinoinensis HOM05D004603 ORTHO05D005244 7.0e-17 90.9 69 59.4
Rhsim07G0062700 Rhododendron simsii HOM05D004603 ORTHO05D005244 7.0e-17 90.9 74 60.8
FAN03G3254 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.2e-16 90.1 74 58.1
FAN06G0782 Fragaria x ananassa HOM05D000001 ORTHO05D009083 1.2e-16 90.1 74 58.1
FAN10G0154 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.2e-16 90.1 74 58.1
Psat7g182960 Pisum sativum HOM05D004603 ORTHO05D005244 1.2e-16 90.1 74 62.2
Potri.001G024000 Populus trichocarpa HOM05D004603 ORTHO05D005244 1.2e-16 90.1 100 50.0
Sopen01g030410 Solanum pennellii HOM05D004603 ORTHO05D005244 1.2e-16 90.1 86 51.2
Nitab4.5_0013777g0030 Nicotiana tabacum HOM05D004603 ORTHO05D005244 1.6e-16 89.7 79 54.4
QL04p013733 Quercus lobata HOM05D004603 ORTHO05D005244 1.6e-16 89.7 82 53.7
Atru.chr11.2495 Acer truncatum HOM05D004603 ORTHO05D005244 2.7e-16 89.0 74 62.2
Atru.chr11.2466 Acer truncatum HOM05D004603 ORTHO05D005244 3.5e-16 88.6 74 62.2
FAN18G3634 Fragaria x ananassa HOM05D004603 ORTHO05D005244 3.5e-16 88.6 71 59.2
Lj3g0020788 Lotus japonicus HOM05D004603 ORTHO05D005244 3.5e-16 88.6 83 55.4
MD00G1188600 Malus domestica HOM05D004603 ORTHO05D005244 3.5e-16 88.6 99 48.5
Solyc01g068450.4 Solanum lycopersicum HOM05D004603 ORTHO05D005244 3.5e-16 88.6 86 50.0
Cfa010862 Carpinus fangiana HOM05D004603 ORTHO05D005244 5.9e-16 87.8 82 54.9
COL.COLO4_25832 Corchorus olitorius HOM05D004603 ORTHO05D005244 5.9e-16 87.8 102 48.0
Haze_03089 Corylus avellana HOM05D004603 ORTHO05D005244 7.7e-16 87.4 81 55.6
TPR.G3881 Trifolium pratense HOM05D004603 ORTHO05D005244 7.7e-16 87.4 80 57.5
THA.LOC104819124 Tarenaya hassleriana HOM05D004603 ORTHO05D005244 1.3e-15 86.7 82 52.4
MBI13_g05166_MAGBIO Magnolia biondii HOM05D004603 ORTHO05D005244 1.7e-15 86.3 112 42.9
Medtr4g071040 Medicago truncatula HOM05D004603 ORTHO05D005244 1.7e-15 86.3 75 57.3
SalBow1G4372 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.7e-15 86.3 73 53.4
SalBow5G1211 Salvia bowleyana HOM05D004603 ORTHO05D005244 1.7e-15 86.3 73 54.8
SEGI_29054 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 2.2e-15 85.9 79 57.0
CiPaw.14G006000 Carya illinoinensis HOM05D004603 ORTHO05D005244 2.9e-15 85.5 73 56.2
SalBow5G1267 Salvia bowleyana HOM05D004603 ORTHO05D005244 2.9e-15 85.5 73 54.8
CDE08G1561 Ceratophyllum demersum HOM05D004603 ORTHO05D005244 3.8e-15 85.1 99 48.5
Cc02_g29120 Coffea canephora HOM05D004603 ORTHO05D005244 5.0e-15 84.7 114 47.4
PGSC0003DMG400023243 Solanum tuberosum HOM05D004603 ORTHO05D005244 5.0e-15 84.7 91 48.4
SEGI_15222 Sequoiadendron giganteum HOM05D004603 ORTHO05D005244 6.5e-15 84.3 80 53.8
vmacro13728 Vaccinium macrocarpon HOM05D004603 ORTHO05D005244 6.5e-15 84.3 74 58.1
COL.COLO4_29439 Corchorus olitorius HOM05D004603 ORTHO05D005244 2.5e-14 82.4 74 55.4
unitig_26.g8818 Utricularia gibba HOM05D004414 ORTHO05D005244 2.5e-14 82.4 78 47.4
RcHm_v2.0_Chr7g0218601 Rosa chinensis HOM05D004603 ORTHO05D005244 4.2e-14 81.6 67 56.7
CDE09G0498 Ceratophyllum demersum HOM05D002215 ORTHO05D002238 1.6e-13 79.7 80 50.0
FAN13G2986 Fragaria x ananassa HOM05D004603 ORTHO05D005244 1.6e-13 79.7 72 52.8
Aa31LG6G8480 Aethionema arabicum HOM05D004603 ORTHO05D005244 2.1e-13 79.3 57 59.6
SHI03956 Sapria himalayana HOM05D005973 ORTHO05D007285 6.1e-13 77.8 83 48.2
Mapoly0122s0047 Marchantia polymorpha HOM05D004603 ORTHO05D005244 1.0e-12 77.0 80 46.2
HPP92_010478 Vanilla planifolia HOM05D004603 ORTHO05D005244 3.0e-12 75.5 84 48.8
TPR.G30506 Trifolium pratense HOM05D004603 ORTHO05D005244 6.8e-12 74.3 83 49.4
AT1G34570 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 3.4e-11 72.0 73 45.2
Os01g0950800 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 3.4e-11 72.0 84 42.9
Os10g0580500 Oryza sativa ssp. japonica HOM05D004603 ORTHO05D005244 3.4e-11 72.0 84 42.9
PSO017G3894 Papaver somniferum HOM05D004603 ORTHO05D005244 3.4e-11 72.0 82 45.1
Prupe.2G029400 Prunus persica HOM05D004603 ORTHO05D005244 3.4e-11 72.0 109 38.5
Carub.0001s3260 Capsella rubella HOM05D004603 ORTHO05D005244 1.7e-10 69.7 102 39.2
Hund13330 Selenicereus undatus HOM05D004603 ORTHO05D005244 2.2e-10 69.3 80 43.8
AL1G49060 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 6.3e-10 67.8 73 45.2
Pp3c5_22730 Physcomitrium patens HOM05D004603 ORTHO05D005244 8.3e-10 67.4 55 52.7
Sc10g0004260 Simmondsia chinensis HOM05D004603 ORTHO05D005244 1.1e-09 67.0 90 42.2
AT3G15750 Arabidopsis thaliana HOM05D004603 ORTHO05D005244 1.8e-09 66.2 74 45.9
PSO063G4454 Papaver somniferum HOM05D004603 ORTHO05D005244 2.4e-09 65.9 83 42.2
Carub.0007s3712 Capsella rubella HOM05D004603 ORTHO05D005244 4.1e-09 65.1 83 41.0
Sp1g29690 Schrenkiella parvula HOM05D004603 ORTHO05D005244 4.1e-09 65.1 56 48.2
Ciclev10017990m.g Citrus clementina HOM05D004603 ORTHO05D005244 5.4e-09 64.7 63 54.0
Ah.12g065100 Amaranthus hybridus HOM05D004603 ORTHO05D005244 1.6e-08 63.2 74 41.9
AUR62026828 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.0e-08 62.8 74 45.9
AUR62037226 Chenopodium quinoa HOM05D004603 ORTHO05D005244 2.0e-08 62.8 74 45.9
EL10Ac2g02852 Beta vulgaris HOM05D004603 ORTHO05D005244 3.5e-08 62.0 80 40.0
BcaB04g17864 Brassica carinata HOM05D004603 ORTHO05D005244 3.5e-08 62.0 56 44.6
BcaC07g37535 Brassica carinata HOM05D004603 ORTHO05D005244 5.9e-08 61.2 101 32.7
BolC8t47853H Brassica oleracea HOM05D000499 ORTHO05D002825 5.9e-08 61.2 101 32.7
CSS0012283 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 5.9e-08 61.2 42 69.0
CSS0050281 Camellia sinensis var. sinensis HOM05D004603 ORTHO05D005244 5.9e-08 61.2 42 69.0
AL7G44820 Arabidopsis lyrata HOM05D004603 ORTHO05D005244 7.7e-08 60.8 56 50.0
HanXRQChr13g0394011 Helianthus annuus HOM05D004603 ORTHO05D005244 7.7e-08 60.8 38 73.7
A08p08230 Brassica napus HOM05D000499 ORTHO05D002825 1.0e-07 60.5 56 42.9
BraA08t32841Z Brassica rapa HOM05D000499 ORTHO05D002825 1.0e-07 60.5 56 42.9
MD07G1031900 Malus domestica HOM05D004603 ORTHO05D005244 1.3e-07 60.1 41 68.3
Lsat_1_v5_gn_1_97861 Lactuca sativa HOM05D004603 ORTHO05D005244 2.9e-07 58.9 40 70.0
PSO528G0152 Papaver somniferum HOM05D004603 ORTHO05D005244 2.9e-07 58.9 79 38.0
Atru.chr11.786 Acer truncatum HOM05D004603 ORTHO05D005244 6.6e-07 57.8 47 63.8
BcaB07g33112 Brassica carinata HOM05D004603 ORTHO05D005244 6.6e-07 57.8 74 37.8
CBR_g23146 Chara braunii HOM05D004542 ORTHO05D005380 1.1e-06 57.0 57 49.1
Thhalv10009671m.g Eutrema salsugineum HOM05D004603 ORTHO05D005244 1.1e-06 57.0 56 44.6
Sp7g17090 Schrenkiella parvula HOM05D004603 ORTHO05D005244 2.5e-06 55.8 56 42.9
ATR0217G019 Amborella trichopoda HOM05D004603 ORTHO05D005244 4.2e-06 55.1 39 64.1
PSO170G0256 Papaver somniferum HOM05D004603 ORTHO05D005244 9.5e-06 53.9 79 36.7


User provided reference genes

Program Settings