Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 8.3e-123 443.7 227 100.0
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 1.9e-87 326.2 227 74.9
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 4.6e-81 305.1 231 72.3
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 2.2e-75 286.2 220 68.2
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 4.2e-66 255.4 229 65.1
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 4.5e-52 208.8 234 56.8
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 5.0e-51 205.3 235 56.2
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 1.1e-50 204.1 236 54.2
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.4e-50 203.8 232 52.2
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 4.2e-50 202.2 242 52.1
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 2.1e-49 199.9 234 53.8
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 2.7e-49 199.5 227 55.9
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 4.7e-49 198.7 196 57.1
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 7.9e-49 198.0 231 54.5
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 1.4e-48 197.2 233 51.5
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 6.7e-48 194.9 224 54.9
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 8.8e-48 194.5 190 56.3
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 1.5e-47 193.7 233 51.1
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 2.6e-47 193.0 226 53.5
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.6e-47 193.0 196 56.1
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 3.3e-47 192.6 237 51.1
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 4.4e-47 192.2 232 51.3
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 4.4e-47 192.2 238 50.8
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 5.7e-47 191.8 232 51.7
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 1.3e-46 190.7 188 58.0
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.3e-46 190.7 233 52.4
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.7e-46 190.3 191 56.5
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 1.7e-46 190.3 191 57.6
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.2e-46 189.9 193 56.5
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 2.8e-46 189.5 240 49.2
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 2.8e-46 189.5 236 52.1
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 8.2e-46 188.0 210 54.3
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 1.1e-45 187.6 191 57.1
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 1.4e-45 187.2 203 54.2
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 1.8e-45 186.8 234 50.0
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 1.8e-45 186.8 188 56.9
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 3.1e-45 186.0 232 49.6
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 4.1e-45 185.7 211 54.0
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 4.1e-45 185.7 236 49.2
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 7.0e-45 184.9 184 59.8
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 9.1e-45 184.5 231 48.9
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 9.1e-45 184.5 190 54.2
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 9.1e-45 184.5 190 54.2
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 1.2e-44 184.1 236 49.2
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 1.5e-44 183.7 226 53.1
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 1.5e-44 183.7 232 49.6
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 2.0e-44 183.3 223 52.5
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 2.6e-44 183.0 172 59.3
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 5.9e-44 181.8 199 50.8
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.0e-43 181.0 197 55.3
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 1.7e-43 180.3 232 50.4
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 1.7e-43 180.3 156 60.3
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 2.9e-43 179.5 234 49.1
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 2.9e-43 179.5 146 65.8
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 2.9e-43 179.5 236 48.3
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 3.8e-43 179.1 205 53.7
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 6.5e-43 178.3 196 54.6
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 6.5e-43 178.3 198 53.5
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.5e-42 177.2 235 48.5
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 1.5e-42 177.2 192 53.6
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 1.5e-42 177.2 225 50.2
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 1.5e-42 177.2 238 48.3
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 2.5e-42 176.4 250 46.4
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.5e-42 176.4 247 49.8
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 3.2e-42 176.0 223 49.3
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.2e-42 176.0 235 48.5
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 3.2e-42 176.0 201 53.2
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 4.2e-42 175.6 250 47.2
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.2e-42 175.6 234 48.3
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 4.2e-42 175.6 192 53.1
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 4.2e-42 175.6 232 50.0
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 4.2e-42 175.6 235 48.5
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 4.2e-42 175.6 141 62.4
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 5.5e-42 175.3 236 47.9
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 7.2e-42 174.9 224 48.7
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 7.2e-42 174.9 162 58.0
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 9.4e-42 174.5 238 50.8
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.6e-41 173.7 197 51.8
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.1e-41 173.3 197 51.8
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 2.1e-41 173.3 197 51.8
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 2.7e-41 172.9 243 47.7
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 2.7e-41 172.9 124 73.4
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 2.7e-41 172.9 187 55.1
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 3.6e-41 172.6 196 53.6
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 4.7e-41 172.2 236 48.3
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 4.7e-41 172.2 238 45.8
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.0e-41 171.4 167 56.9
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.0e-41 171.4 235 46.4
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 1.4e-40 170.6 235 47.7
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 1.4e-40 170.6 189 55.6
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 1.4e-40 170.6 207 50.2
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.8e-40 170.2 237 47.3
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 1.8e-40 170.2 214 49.5
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 2.3e-40 169.9 203 51.7
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 4.0e-40 169.1 128 68.0
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 4.0e-40 169.1 131 67.9
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 5.2e-40 168.7 215 48.8
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 8.8e-40 167.9 151 59.6
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 8.8e-40 167.9 226 45.1
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 1.1e-39 167.5 188 53.7
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 1.5e-39 167.2 165 55.2
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 2.0e-39 166.8 206 49.5
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 2.6e-39 166.4 193 49.7
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 4.4e-39 165.6 151 58.9
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 4.4e-39 165.6 151 60.3
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 7.5e-39 164.9 112 71.4
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 7.5e-39 164.9 225 47.1
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 9.7e-39 164.5 229 47.2
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 1.3e-38 164.1 112 73.2
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 1.3e-38 164.1 152 57.9
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 2.2e-38 163.3 114 70.2
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 2.2e-38 163.3 232 47.8
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 2.2e-38 163.3 112 72.3
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 2.2e-38 163.3 241 46.1
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 4.8e-38 162.2 198 52.0
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 8.2e-38 161.4 97 80.4
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 1.1e-37 161.0 218 47.7
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 1.1e-37 161.0 183 52.5
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 1.4e-37 160.6 229 44.5
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 5.3e-37 158.7 97 76.3
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 7.0e-37 158.3 96 76.0
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 7.0e-37 158.3 128 62.5
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 1.6e-36 157.1 123 65.0
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 1.6e-36 157.1 237 46.4
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 2.0e-36 156.8 214 46.7
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 4.5e-36 155.6 103 71.8
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 5.9e-36 155.2 151 53.6
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 1.0e-35 154.5 102 74.5
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 1.3e-35 154.1 204 46.6
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.3e-35 154.1 205 46.8
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 1.3e-35 154.1 216 46.3
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 1.7e-35 153.7 103 70.9
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 1.7e-35 153.7 208 45.7
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 2.2e-35 153.3 254 42.9
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 2.9e-35 152.9 209 44.5
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 3.8e-35 152.5 103 69.9
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 3.8e-35 152.5 103 69.9
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 6.5e-35 151.8 103 69.9
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 8.5e-35 151.4 241 44.4
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 5.5e-34 148.7 97 72.2
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 7.2e-34 148.3 126 61.9
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 1.2e-33 147.5 204 45.6
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 1.2e-33 147.5 107 62.6
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 2.7e-33 146.4 183 46.4
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 4.7e-33 145.6 213 45.1
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 8.0e-33 144.8 135 57.8
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 1.0e-32 144.4 206 42.7
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 2.6e-31 139.8 191 45.0
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 4.4e-31 139.0 192 45.8
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 4.4e-31 139.0 197 45.2
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 3.7e-30 136.0 81 77.8
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.1e-29 134.4 133 54.1
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 7.7e-28 128.3 85 70.6
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 7.7e-28 128.3 85 70.6
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 5.2e-24 115.5 188 41.0
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 7.5e-23 111.7 125 52.8
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 7.5e-23 111.7 141 42.6
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 1.3e-22 110.9 121 57.0
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 9.1e-21 104.8 158 47.5
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 5.0e-19 99.0 164 42.7
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 5.7e-15 85.5 206 31.1
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 1.0e-11 74.7 86 45.3
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 3.0e-11 73.2 43 74.4
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 6.6e-11 72.0 179 31.8
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.2e-09 67.8 93 36.6
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 5.8e-07 58.9 40 62.5
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 2.2e-06 57.0 85 45.9


User provided reference genes

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