Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.6e-71 272.7 147 100.0
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 3.3e-56 221.9 167 77.8
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 5.7e-56 221.1 163 77.9
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 3.1e-54 215.3 147 81.0
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 1.2e-53 213.4 147 81.0
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.5e-53 213.0 147 80.3
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 2.0e-53 212.6 147 78.2
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 2.0e-53 212.6 147 78.2
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 2.6e-53 212.2 147 79.6
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 3.4e-53 211.8 147 79.6
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 4.5e-53 211.5 147 78.9
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 4.5e-53 211.5 147 78.9
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 5.9e-53 211.1 147 77.6
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 5.9e-53 211.1 147 80.3
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 5.9e-53 211.1 147 79.6
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.9e-53 211.1 147 79.6
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 5.9e-53 211.1 147 79.6
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 5.9e-53 211.1 147 77.6
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 7.7e-53 210.7 147 78.9
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 7.7e-53 210.7 147 79.6
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.0e-52 210.3 147 79.6
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 1.0e-52 210.3 147 76.2
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.3e-52 209.9 147 76.9
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 1.3e-52 209.9 147 79.6
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 1.3e-52 209.9 147 77.6
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 1.3e-52 209.9 147 77.6
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 1.7e-52 209.5 147 77.6
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 1.7e-52 209.5 147 76.9
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 1.7e-52 209.5 147 78.9
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.2e-52 209.1 147 76.9
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.9e-52 208.8 147 76.9
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 5.0e-52 208.0 152 76.3
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 5.0e-52 208.0 147 76.9
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 8.5e-52 207.2 147 76.2
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 8.5e-52 207.2 147 76.9
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 1.1e-51 206.8 147 77.6
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 1.1e-51 206.8 147 75.5
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 1.4e-51 206.5 147 76.2
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.4e-51 206.5 147 76.2
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.4e-51 206.5 147 76.2
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.4e-51 206.5 147 77.6
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 1.9e-51 206.1 147 77.6
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 1.9e-51 206.1 147 77.6
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.9e-51 206.1 147 77.6
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 3.2e-51 205.3 147 76.9
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 4.2e-51 204.9 151 75.5
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 4.2e-51 204.9 151 75.5
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 4.2e-51 204.9 147 75.5
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 5.5e-51 204.5 147 74.8
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 7.2e-51 204.1 147 78.9
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 7.2e-51 204.1 147 75.5
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 9.4e-51 203.8 147 75.5
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 2.1e-50 202.6 147 74.8
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 2.1e-50 202.6 146 74.0
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.7e-50 202.2 147 76.2
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 4.7e-50 201.4 146 73.3
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 6.1e-50 201.1 147 74.1
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 1.0e-49 200.3 146 73.3
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 1.8e-49 199.5 146 73.3
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 1.8e-49 199.5 147 74.8
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 2.3e-49 199.1 147 74.8
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 3.0e-49 198.7 147 73.5
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 3.9e-49 198.4 147 74.1
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 3.9e-49 198.4 148 74.3
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 5.1e-49 198.0 147 72.8
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 5.1e-49 198.0 147 74.1
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 6.7e-49 197.6 146 74.0
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 6.7e-49 197.6 146 73.3
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.1e-48 196.8 152 73.0
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.1e-48 196.8 147 72.8
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 1.5e-48 196.4 147 72.1
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 2.0e-48 196.1 146 72.6
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 2.6e-48 195.7 155 71.6
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 2.6e-48 195.7 155 71.6
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 4.4e-48 194.9 148 75.0
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 7.4e-48 194.1 147 71.4
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 7.4e-48 194.1 147 71.4
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 9.7e-48 193.7 147 73.5
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 1.3e-47 193.4 147 71.4
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 1.3e-47 193.4 146 72.6
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.3e-47 193.4 147 74.8
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 1.7e-47 193.0 147 72.8
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.2e-47 192.6 147 71.4
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 2.2e-47 192.6 147 71.4
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 3.7e-47 191.8 147 72.8
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 4.8e-47 191.4 146 71.9
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 8.2e-47 190.7 147 72.8
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.1e-46 190.3 147 72.8
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 1.1e-46 190.3 147 72.8
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.1e-46 188.3 147 72.8
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 4.1e-46 188.3 146 71.2
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 5.3e-46 188.0 143 72.7
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 7.0e-46 187.6 161 67.1
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.4e-45 185.3 147 70.1
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 5.9e-45 184.5 151 66.9
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 5.9e-45 184.5 147 69.4
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.7e-45 184.1 147 68.7
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.2e-44 182.6 147 70.7
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.8e-44 181.8 147 67.3
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 6.5e-44 181.0 176 59.1
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 8.5e-44 180.6 147 70.7
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.1e-43 180.3 148 67.6
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 2.5e-43 179.1 143 71.3
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.5e-43 179.1 147 66.7
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 2.5e-43 179.1 181 58.6
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 2.1e-42 176.0 168 58.3
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 7.4e-40 167.5 145 65.5
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 9.7e-40 167.2 121 76.9
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.3e-39 166.8 145 64.1
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 4.8e-39 164.9 121 75.2
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 4.8e-39 164.9 147 61.2
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 8.2e-39 164.1 147 61.9
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 5.9e-37 157.9 121 72.7
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 2.2e-36 156.0 143 64.3
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 3.8e-36 155.2 123 69.1
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 8.5e-36 154.1 134 69.4
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 2.5e-35 152.5 175 52.6
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 4.2e-35 151.8 143 63.6
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 4.2e-35 151.8 125 68.8
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 2.7e-34 149.1 147 58.5
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 3.0e-33 145.6 124 66.1
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 3.3e-32 142.1 117 68.4
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 2.8e-31 139.0 131 61.8
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 3.7e-31 138.7 121 64.5
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 6.3e-31 137.9 104 73.1
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 8.2e-31 137.5 145 52.4
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 1.1e-30 137.1 167 52.1
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 7.0e-30 134.4 155 52.9
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 5.0e-28 128.3 142 54.9
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.0e-28 128.3 81 85.2
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 8.5e-28 127.5 80 85.0
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 1.5e-27 126.7 123 61.0
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.1e-26 122.9 80 82.5
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.7e-26 121.7 80 81.2
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.0e-25 120.6 76 86.8
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.0e-25 120.6 77 84.4
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 2.3e-25 119.4 146 54.1
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 2.0e-24 116.3 144 48.6
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.6e-24 115.9 127 55.1
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.2e-23 112.8 69 82.6
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 2.4e-22 109.4 69 82.6
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.2e-21 107.1 93 64.5
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 7.7e-21 104.4 140 47.1
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 1.7e-20 103.2 93 62.4
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 3.0e-17 92.4 69 73.9
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 3.4e-16 89.0 57 84.2
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.9e-15 85.1 47 87.2
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.3e-15 84.7 78 62.8
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 9.2e-14 80.9 78 59.0
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 1.6e-13 80.1 78 57.7
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 4.5e-13 78.6 75 58.7
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 4.5e-13 78.6 75 58.7
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 4.5e-13 78.6 102 52.0
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 7.3e-11 71.2 141 35.5
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 2.8e-10 69.3 54 68.5
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 7.5e-08 61.2 112 41.1
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 7.5e-08 61.2 112 41.1
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 8.3e-07 57.8 37 75.7
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 8.3e-07 57.8 37 75.7
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-06 57.4 51 58.8
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 1.1e-06 57.4 49 61.2
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 1.9e-06 56.6 51 58.8
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 3.2e-06 55.8 44 68.2


User provided reference genes

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