Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G0282 Erigeron canadensis HOM05D004038 ORTHO05D004619 5.5e-306 1053.5 542 100.0
HanXRQChr01g0023591 Helianthus annuus HOM05D004038 ORTHO05D004619 8.6e-259 896.7 626 78.9
Lsat_1_v5_gn_1_77161 Lactuca sativa HOM05D004038 ORTHO05D004619 1.9e-221 772.7 593 73.7
Lj6A289T17 Lonicera japonica HOM05D004038 ORTHO05D004619 1.6e-220 769.6 641 68.3
Dinv24739 Davidia involucrata HOM05D004038 ORTHO05D004619 7.3e-218 760.8 625 68.5
Cfa008534 Carpinus fangiana HOM05D004038 ORTHO05D004619 1.6e-217 759.6 617 68.6
Haze_11105 Corylus avellana HOM05D004038 ORTHO05D004619 1.8e-216 756.1 617 68.2
Manes.01G009451 Manihot esculenta HOM05D004038 ORTHO05D004619 9.0e-216 753.8 607 68.4
QL10p064923 Quercus lobata HOM05D004038 ORTHO05D004619 2.0e-215 752.7 612 68.5
Peaxi162Scf01205g00162 Petunia axillaris HOM05D004038 ORTHO05D004619 9.9e-215 750.4 634 66.6
CiPaw.02G125700 Carya illinoinensis HOM05D004038 ORTHO05D004619 1.7e-214 749.6 610 69.3
Cpa.g.sc9.239 Carica papaya HOM05D004038 ORTHO05D004619 8.4e-214 747.3 595 68.7
Oeu061885.1 Olea europaea HOM05D004038 ORTHO05D004619 1.4e-213 746.5 600 69.2
Nitab4.5_0000348g0080 Nicotiana tabacum HOM05D004038 ORTHO05D004619 7.1e-213 744.2 602 68.8
Solyc12g017540.2 Solanum lycopersicum HOM05D004038 ORTHO05D004619 4.6e-212 741.5 625 66.7
Solyc08g015780.3 Solanum lycopersicum HOM05D004038 ORTHO05D004619 1.0e-211 740.3 632 65.8
Sopen08g005950 Solanum pennellii HOM05D004038 ORTHO05D004619 3.9e-211 738.4 632 65.7
PGSC0003DMG400013719 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.9e-211 738.4 631 65.3
CiPaw.01G203200 Carya illinoinensis HOM05D004038 ORTHO05D004619 8.7e-211 737.3 591 69.7
Dinv33253 Davidia involucrata HOM05D004038 ORTHO05D004619 8.7e-211 737.3 595 68.7
CAN.G68.3 Capsicum annuum HOM05D004038 ORTHO05D004619 1.5e-210 736.5 632 65.3
Nitab4.5_0008814g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 1.9e-210 736.1 599 67.9
Hma1.2p1_0513F.1_g169760 Hydrangea macrophylla HOM05D004038 ORTHO05D004619 2.5e-210 735.7 622 67.0
Thecc.05G000500 Theobroma cacao HOM05D004038 ORTHO05D004619 2.5e-210 735.7 610 67.2
Sopen12g008310 Solanum pennellii HOM05D004038 ORTHO05D004619 3.3e-210 735.3 601 67.9
TAR365G0572 Trochodendron aralioides HOM05D004038 ORTHO05D004619 2.1e-209 732.6 595 68.6
Prupe.7G271200 Prunus persica HOM05D004038 ORTHO05D004619 2.8e-209 732.3 595 68.6
PGSC0003DMG402006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 3.6e-209 731.9 625 66.1
Duzib093G1419 Durio zibethinus HOM05D004038 ORTHO05D004619 1.1e-208 730.3 607 67.1
Sabra07G0114900 Salix brachista HOM05D004038 ORTHO05D004619 1.8e-208 729.6 619 65.6
Actinidia18385 Actinidia chinensis HOM05D004038 ORTHO05D004619 5.3e-208 728.0 595 67.2
DCAR_023794 Daucus carota HOM05D004038 ORTHO05D004619 6.9e-208 727.6 568 69.2
Duzib106G0840 Durio zibethinus HOM05D004038 ORTHO05D004619 6.9e-208 727.6 612 66.5
TAR636G2134 Trochodendron aralioides HOM05D004038 ORTHO05D004619 9.0e-208 727.2 584 68.8
Rhsim09G0001600 Rhododendron simsii HOM05D004038 ORTHO05D004619 1.2e-207 726.9 605 66.9
Potri.017G001300 Populus trichocarpa HOM05D004038 ORTHO05D004619 2.0e-207 726.1 593 68.6
COL.COLO4_14407 Corchorus olitorius HOM05D004038 ORTHO05D004619 2.6e-207 725.7 590 68.3
MBI07_g27881_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 2.6e-207 725.7 617 65.2
MSTRG.24543 Avicennia marina HOM05D004038 ORTHO05D004619 3.4e-207 725.3 617 65.6
Atru.chr3.1959 Acer truncatum HOM05D004038 ORTHO05D004619 7.6e-207 724.2 595 66.7
Nitab4.5_0000219g0020 Nicotiana tabacum HOM05D004038 ORTHO05D004619 7.6e-207 724.2 598 68.1
GSVIVG01038267001 Vitis vinifera HOM05D004038 ORTHO05D004619 9.9e-207 723.8 611 66.6
MD15G1142000 Malus domestica HOM05D004038 ORTHO05D004619 1.7e-206 723.0 590 67.5
Potri.007G146500 Populus trichocarpa HOM05D004038 ORTHO05D004619 2.9e-206 722.2 593 67.6
TWI63G0698 Tripterygium wilfordii HOM05D004038 ORTHO05D004619 6.4e-206 721.1 621 64.1
vmacro00732 Vaccinium macrocarpon HOM05D004038 ORTHO05D004619 8.4e-206 720.7 624 64.9
Eucgr.A00409 Eucalyptus grandis HOM05D004038 ORTHO05D004619 7.1e-205 717.6 607 64.7
Sc19g0002460 Simmondsia chinensis HOM05D004038 ORTHO05D004619 7.1e-205 717.6 600 66.5
RcHm_v2.0_Chr2g0084351 Rosa chinensis HOM05D004038 ORTHO05D004619 1.6e-204 716.5 592 67.4
MELO3C011438.2 Cucumis melo HOM05D004038 ORTHO05D004619 2.7e-204 715.7 593 67.3
ClCG08G010220 Citrullus lanatus HOM05D004038 ORTHO05D004619 3.5e-204 715.3 593 67.1
FAN26G0143 Fragaria x ananassa HOM05D004038 ORTHO05D004619 6.0e-204 714.5 563 69.4
Nitab4.5_0012258g0010 Nicotiana tabacum HOM05D004038 ORTHO05D004619 6.0e-204 714.5 598 67.1
CsaV3_6G032420 Cucumis sativus L. HOM05D004038 ORTHO05D004619 1.0e-203 713.8 593 67.1
Ciclev10019310m.g Citrus clementina HOM05D004038 ORTHO05D004619 1.8e-203 713.0 592 66.2
Gohir.D13G095500 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.8e-203 713.0 615 65.2
Sed0003085 Sechium edule HOM05D004038 ORTHO05D004619 1.8e-203 713.0 593 66.9
Gorai.001G247600 Gossypium raimondii HOM05D004038 ORTHO05D004619 3.0e-203 712.2 617 65.3
FAN28G1790 Fragaria x ananassa HOM05D004038 ORTHO05D004619 1.1e-202 710.3 605 65.0
Gohir.A13G079100 Gossypium hirsutum HOM05D004038 ORTHO05D004619 1.1e-202 710.3 617 65.0
Peaxi162Scf00057g00179 Petunia axillaris HOM05D004038 ORTHO05D004619 1.1e-202 710.3 549 71.0
AUR62023688 Chenopodium quinoa HOM05D004038 ORTHO05D004619 1.9e-202 709.5 599 65.8
MSTRG.22058 Avicennia marina HOM05D004038 ORTHO05D004619 4.3e-202 708.4 623 63.9
Aqoxy2G04186 Aquilegia oxysepala HOM05D004038 ORTHO05D004619 5.6e-202 708.0 621 63.9
Migut.N03013 Erythranthe guttata HOM05D004038 ORTHO05D004619 5.6e-202 708.0 563 68.7
FvH4_1g00080 Fragaria vesca HOM05D004038 ORTHO05D004619 5.6e-202 708.0 604 64.9
MBI10_g31866_MAGBIO Magnolia biondii HOM05D004038 ORTHO05D004619 9.6e-202 707.2 591 67.2
Migut.O00491 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.6e-201 706.4 563 68.7
Nn7g37426 Nelumbo nucifera HOM05D004038 ORTHO05D004619 2.4e-200 702.6 512 74.2
Hund12302 Selenicereus undatus HOM05D004038 ORTHO05D004619 2.6e-199 699.1 607 63.9
PSO170G2946 Papaver somniferum HOM05D004038 ORTHO05D004619 3.4e-199 698.7 602 64.8
SalBow3G0041 Salvia bowleyana HOM05D004038 ORTHO05D004619 3.4e-199 698.7 577 66.0
PSO357G0424 Papaver somniferum HOM05D004038 ORTHO05D004619 7.6e-199 697.6 602 64.6
Glyma.17G000500 Glycine max HOM05D004038 ORTHO05D004619 1.0e-198 697.2 599 65.1
Phvul.003G074400 Phaseolus vulgaris HOM05D004038 ORTHO05D004619 1.0e-198 697.2 566 67.3
VMungo1215G2173 Vigna mungo HOM05D004038 ORTHO05D004619 8.4e-198 694.1 566 67.0
Glyma.07G273900 Glycine max HOM05D004038 ORTHO05D004619 5.5e-197 691.4 599 64.4
unitig_27.g25138 Utricularia gibba HOM05D004038 ORTHO05D004619 5.5e-197 691.4 605 64.0
THA.LOC104802352 Tarenaya hassleriana HOM05D004038 ORTHO05D004619 1.2e-196 690.3 596 65.1
Lj4g0009662 Lotus japonicus HOM05D004038 ORTHO05D004619 2.7e-196 689.1 565 66.9
Rhsim09G0010000 Rhododendron simsii HOM05D004038 ORTHO05D004619 2.8e-193 679.1 553 69.3
CANSAT56G2502 Cannabis sativa HOM05D004038 ORTHO05D004619 8.2e-193 677.6 521 69.1
Migut.G00797 Erythranthe guttata HOM05D004038 ORTHO05D004619 1.5e-191 673.3 566 65.5
Aa31LG1G25740 Aethionema arabicum HOM05D004038 ORTHO05D004619 4.5e-191 671.8 588 64.1
Ah.07g203340 Amaranthus hybridus HOM05D004038 ORTHO05D004619 7.6e-191 671.0 593 63.1
Cc03_g15890 Coffea canephora HOM05D004038 ORTHO05D004619 1.4e-189 666.8 586 62.6
Ca_13541_v3 Cicer arietinum L. HOM05D004038 ORTHO05D004619 4.2e-189 665.2 587 62.4
Medtr4g134960 Medicago truncatula HOM05D004038 ORTHO05D004619 7.2e-189 664.5 573 63.7
Lalb_Chr13g0304471 Lupinus albus HOM05D004038 ORTHO05D004619 1.2e-188 663.7 575 64.0
EL10Ac3g06184 Beta vulgaris HOM05D004038 ORTHO05D004619 7.9e-188 661.0 663 58.2
AUR62002499 Chenopodium quinoa HOM05D004038 ORTHO05D004619 3.0e-187 659.1 617 61.3
Sp4g26170 Schrenkiella parvula HOM05D004038 ORTHO05D004619 5.1e-187 658.3 598 62.7
Thhalv10001361m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.9e-186 656.4 599 61.9
AT2G44090 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 2.5e-186 656.0 584 62.8
PGR042G1685 Punica granatum HOM05D004038 ORTHO05D004619 4.3e-186 655.2 570 62.6
CARHR170240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 2.2e-185 652.9 578 63.3
AT3G59910 Arabidopsis thaliana HOM05D004038 ORTHO05D004619 8.2e-185 651.0 596 61.6
AL5G42070 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 2.4e-184 649.4 596 61.4
Psat4g001200 Pisum sativum HOM05D004038 ORTHO05D004619 5.3e-184 648.3 588 61.6
TPR.G5970 Trifolium pratense HOM05D004038 ORTHO05D004619 4.5e-183 645.2 479 71.4
Thhalv10005846m.g Eutrema salsugineum HOM05D004038 ORTHO05D004619 1.3e-182 643.7 556 63.8
BcaB02g08921 Brassica carinata HOM05D004038 ORTHO05D004619 2.9e-182 642.5 592 60.3
A05p04210 Brassica napus HOM05D004038 ORTHO05D004619 1.9e-181 639.8 592 60.3
Sp5g03260 Schrenkiella parvula HOM05D004038 ORTHO05D004619 1.9e-181 639.8 596 60.4
BraA05t19406Z Brassica rapa HOM05D004038 ORTHO05D004619 1.2e-180 637.1 591 60.2
Carub.0005s2665 Capsella rubella HOM05D004038 ORTHO05D004619 2.1e-180 636.3 596 60.9
HPP92_004656 Vanilla planifolia HOM05D004038 ORTHO05D004619 2.1e-180 636.3 578 62.1
C04p04970 Brassica napus HOM05D004038 ORTHO05D004619 3.6e-180 635.6 591 60.7
SGA_v2.0_scaffold19G08904 Striga asiatica HOM05D004038 ORTHO05D004619 6.1e-180 634.8 544 66.7
BraA09t40655Z Brassica rapa HOM05D004038 ORTHO05D004619 1.4e-179 633.6 592 59.8
A09p52260 Brassica napus HOM05D004038 ORTHO05D004619 1.8e-179 633.3 592 59.8
BcaC02g12341 Brassica carinata HOM05D004038 ORTHO05D004619 3.0e-179 632.5 590 60.5
BolC4t22128H Brassica oleracea HOM05D004038 ORTHO05D004619 3.0e-179 632.5 590 60.5
BcaC07g40397 Brassica carinata HOM05D004038 ORTHO05D004619 5.1e-179 631.7 599 59.6
arahy.Tifrunner.gnm1.ann1.7FI9ND Arachis hypogaea HOM05D004038 ORTHO05D004619 2.0e-178 629.8 542 63.7
arahy.Tifrunner.gnm1.ann1.BTB9WU Arachis hypogaea HOM05D004038 ORTHO05D004619 2.0e-178 629.8 542 63.7
BcaC07g40545 Brassica carinata HOM05D004038 ORTHO05D004619 2.0e-178 629.8 566 61.5
C08p34910 Brassica napus HOM05D004038 ORTHO05D004619 2.0e-178 629.8 592 59.8
BolC8t51093H Brassica oleracea HOM05D004038 ORTHO05D004619 2.0e-178 629.8 566 61.5
Ah.13g073130 Amaranthus hybridus HOM05D004038 ORTHO05D004619 2.5e-178 629.4 588 61.1
MD02G1000800 Malus domestica HOM05D004038 ORTHO05D004619 2.4e-176 622.9 594 61.1
Aa31LG10G14160 Aethionema arabicum HOM05D004038 ORTHO05D004619 1.2e-175 620.5 621 58.0
CDE08G0097 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 1.8e-171 606.7 542 62.7
AL4G42970 Arabidopsis lyrata HOM05D004038 ORTHO05D004619 5.7e-170 601.7 591 58.9
SEGI_02142 Sequoiadendron giganteum HOM05D004038 ORTHO05D004619 3.7e-169 599.0 534 61.8
BcaC02g07135 Brassica carinata HOM05D004038 ORTHO05D004619 2.4e-168 596.3 527 61.9
CDE09G0082 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 7.7e-167 591.3 518 61.0
ATR0225G045 Amborella trichopoda HOM05D004038 ORTHO05D004619 1.1e-165 587.4 518 62.2
Os11g0246900 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 2.5e-165 586.3 518 61.2
Zm00001eb168270 Zea mays HOM05D004038 ORTHO05D004619 6.7e-163 578.2 603 54.9
ATR0743G108 Amborella trichopoda HOM05D004038 ORTHO05D004619 5.7e-162 575.1 603 55.6
Mapoly0053s0086 Marchantia polymorpha HOM05D004038 ORTHO05D004619 1.3e-158 563.9 522 60.2
HPP92_001964 Vanilla planifolia HOM05D004038 ORTHO05D004619 1.2e-156 557.4 596 55.0
Pp3c23_11480 Physcomitrium patens HOM05D004038 ORTHO05D004619 4.7e-156 555.4 526 58.9
Pp3c20_17330 Physcomitrium patens HOM05D004038 ORTHO05D004619 8.8e-155 551.2 526 58.2
Cc03_g15910 Coffea canephora HOM05D004038 ORTHO05D004619 1.5e-154 550.4 418 70.6
Pp3c24_10000 Physcomitrium patens HOM05D004038 ORTHO05D004619 3.7e-153 545.8 526 57.8
SalBow6G2055 Salvia bowleyana HOM05D004038 ORTHO05D004619 9.1e-152 541.2 405 70.6
Oeu050303.2 Olea europaea HOM05D004038 ORTHO05D004619 2.7e-151 539.7 409 70.7
Actinidia34559 Actinidia chinensis HOM05D004038 ORTHO05D004619 3.6e-148 529.3 449 66.8
AagrBONN_evm.TU.Sc2ySwM_344.984 Anthoceros agrestis HOM05D004038 ORTHO05D004619 2.3e-147 526.6 512 58.8
Pp3c23_5610 Physcomitrium patens HOM05D004038 ORTHO05D004619 9.8e-146 521.2 635 49.9
SMO361G0247 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 2.2e-145 520.0 441 62.8
SMO266G0055 Selaginella moellendorffii HOM05D004038 ORTHO05D004619 6.3e-145 518.5 441 62.1
FAN23G2340 Fragaria x ananassa HOM05D004038 ORTHO05D004619 8.3e-145 518.1 405 68.4
Zm00001eb244150 Zea mays HOM05D004038 ORTHO05D004619 1.1e-120 438.0 573 44.7
MD01G1124800 Malus domestica HOM05D004038 ORTHO05D004619 4.4e-114 416.0 524 48.3
Os02g0562400 Oryza sativa ssp. japonica HOM05D004038 ORTHO05D004619 1.3e-113 414.5 480 49.0
CARHR139240 Cardamine hirsuta HOM05D004038 ORTHO05D004619 3.6e-108 396.4 378 59.3
FAN23G0195 Fragaria x ananassa HOM05D004038 ORTHO05D004619 3.8e-105 386.3 312 68.6
Nn1g09401 Nelumbo nucifera HOM05D004038 ORTHO05D004619 6.4e-105 385.6 331 66.5
CDE02G2909 Ceratophyllum demersum HOM05D004038 ORTHO05D004619 2.1e-84 317.4 460 43.9
Carub.0004s2664 Capsella rubella HOM05D004038 ORTHO05D004619 6.9e-83 312.4 239 68.2
BcaB02g10668 Brassica carinata HOM05D004038 ORTHO05D004619 7.7e-66 255.8 145 89.0
PGSC0003DMG401006465 Solanum tuberosum HOM05D004038 ORTHO05D004619 4.5e-50 203.4 157 68.2
FvH4_6g21450 Fragaria vesca HOM05D004038 ORTHO05D004619 1.6e-39 168.3 98 84.7
ATR1120G077 Amborella trichopoda HOM05D004884 ORTHO05D005873 3.1e-27 127.5 96 67.7
ATR0115G008 Amborella trichopoda HOM05D004038 ORTHO05D004619 2.5e-24 117.9 96 62.5
BolC4t28590H Brassica oleracea HOM05D000190 ORTHO05D000113 4.7e-23 113.6 162 42.0
Oeu023156.1 Olea europaea HOM05D004038 ORTHO05D004619 1.0e-22 112.5 85 67.1
C04p70890 Brassica napus HOM05D000190 ORTHO05D000113 4.0e-22 110.5 162 43.8
Oeu038224.1 Olea europaea HOM05D003383 ORTHO05D003890 4.4e-21 107.1 126 47.6
A04p33200 Brassica napus HOM05D000190 ORTHO05D000113 5.7e-21 106.7 159 41.5
BraA04t18779Z Brassica rapa HOM05D000190 ORTHO05D000113 5.7e-21 106.7 159 41.5
SGA_v2.0_scaffold10G05092 Striga asiatica HOM05D020555 ORTHO05D004619 2.8e-15 87.8 70 72.9
SGA_v2.0_scaffold158G37520 Striga asiatica HOM05D004038 ORTHO05D004619 4.0e-14 84.0 81 55.6
SGA_v2.0_scaffold18G08543 Striga asiatica HOM05D004038 ORTHO05D004619 6.8e-14 83.2 100 51.0
FvH4_5g21451 Fragaria vesca HOM05D004038 ORTHO05D004619 1.9e-11 75.1 45 80.0
ATR0665G114 Amborella trichopoda HOM05D004038 ORTHO05D004619 9.2e-11 72.8 74 59.5
SHI01462 Sapria himalayana HOM05D004038 ORTHO05D004619 6.6e-09 66.6 57 52.6
ATR0624G069 Amborella trichopoda HOM05D004038 ORTHO05D004619 6.2e-07 60.1 62 53.2


User provided reference genes

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