Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 5.3e-144 514.6 314 100.0
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 1.5e-93 347.1 268 73.1
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 1.6e-71 273.9 267 64.4
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 7.6e-42 175.3 275 43.6
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.3e-41 174.5 275 43.6
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.3e-41 174.5 275 44.0
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.3e-41 174.5 273 43.2
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 4.9e-41 172.6 275 43.6
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 4.2e-40 169.5 275 42.9
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 5.5e-40 169.1 258 48.4
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 7.1e-40 168.7 272 42.6
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 1.6e-39 167.5 282 42.2
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 1.3e-38 164.5 255 48.2
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 1.6e-36 157.5 245 47.3
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 6.9e-35 152.1 257 45.9
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 1.2e-34 151.4 232 43.5
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.0e-34 150.6 231 43.3
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.6e-34 150.2 232 44.0
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 3.4e-34 149.8 192 51.0
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 4.5e-34 149.4 219 43.8
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 5.9e-34 149.1 232 44.0
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 7.6e-34 148.7 245 46.1
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 1.7e-33 147.5 204 45.1
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 2.2e-33 147.1 279 40.1
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 6.5e-33 145.6 206 47.1
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 8.5e-33 145.2 247 42.9
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 1.4e-32 144.4 247 42.9
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 2.5e-32 143.7 188 50.5
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 2.5e-32 143.7 196 46.9
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 3.2e-32 143.3 201 46.3
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 5.5e-32 142.5 243 37.9
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 6.1e-31 139.0 207 49.8
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 7.9e-31 138.7 194 49.5
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 1.0e-30 138.3 253 43.5
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 1.8e-30 137.5 192 49.0
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 2.3e-30 137.1 254 42.5
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 3.0e-30 136.7 247 38.9
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 6.7e-30 135.6 254 38.6
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 4.3e-29 132.9 192 47.4
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 5.7e-29 132.5 198 42.9
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 5.7e-29 132.5 208 48.1
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 7.4e-29 132.1 252 38.9
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 2.2e-28 130.6 214 48.6
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 2.2e-28 130.6 222 45.0
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 2.8e-28 130.2 198 41.4
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 4.8e-28 129.4 214 47.2
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 2.4e-27 127.1 206 48.1
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 3.1e-27 126.7 254 37.0
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 4.1e-27 126.3 245 46.5
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 6.9e-27 125.6 220 45.0
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 9.0e-27 125.2 224 48.2
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 1.2e-26 124.8 207 44.4
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 2.0e-26 124.0 279 36.2
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 2.0e-26 124.0 276 38.0
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 2.6e-26 123.6 237 39.7
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 2.6e-26 123.6 196 49.5
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 4.5e-26 122.9 280 35.4
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 4.5e-26 122.9 281 36.7
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 7.7e-26 122.1 204 47.1
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 7.7e-26 122.1 281 36.3
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 1.0e-25 121.7 199 42.7
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 1.0e-25 121.7 277 36.8
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 2.2e-25 120.6 210 47.6
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 3.8e-25 119.8 180 40.6
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 2.5e-24 117.1 255 38.0
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 3.2e-24 116.7 242 33.1
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 4.2e-24 116.3 182 40.1
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 4.2e-24 116.3 216 44.4
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 5.5e-24 115.9 282 38.3
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 7.2e-24 115.5 276 35.9
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 1.6e-23 114.4 234 42.3
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 1.6e-23 114.4 193 39.9
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 1.6e-23 114.4 264 34.1
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 2.7e-23 113.6 273 34.1
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 4.6e-23 112.8 255 34.5
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 6.1e-23 112.5 255 34.5
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 7.9e-23 112.1 255 34.5
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 7.9e-23 112.1 189 40.7
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 1.4e-22 111.3 256 37.5
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 3.0e-22 110.2 239 39.3
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 6.7e-22 109.0 200 46.0
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 1.1e-21 108.2 201 38.3
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 1.5e-21 107.8 178 44.4
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 2.0e-21 107.5 274 37.6
Dinv40298 Davidia involucrata HOM05D004353 ORTHO05D004989 2.6e-21 107.1 174 43.7
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 2.6e-21 107.1 214 42.1
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 4.3e-21 106.3 202 45.0
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 5.7e-21 105.9 194 43.8
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 9.7e-21 105.1 268 32.5
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 4.8e-20 102.8 193 43.0
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 4.8e-20 102.8 186 37.1
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 8.2e-20 102.1 204 36.3
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 1.1e-19 101.7 234 35.5
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 1.1e-19 101.7 241 38.6
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 1.8e-19 100.9 239 38.9
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 3.1e-19 100.1 231 35.5
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 9.1e-19 98.6 295 35.3
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 1.5e-18 97.8 161 44.7
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 3.4e-18 96.7 212 40.1
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 5.9e-18 95.9 302 31.5
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 1.0e-17 95.1 170 40.0
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 1.7e-17 94.4 258 36.8
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 2.9e-17 93.6 173 39.3
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 2.9e-17 93.6 213 40.4
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 6.5e-17 92.4 187 39.6
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 8.5e-17 92.0 170 42.9
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 3.2e-16 90.1 231 37.7
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 7.2e-16 89.0 168 45.8
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 1.6e-15 87.8 253 34.8
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 2.7e-15 87.0 255 31.8
MD10G1168700 Malus domestica HOM05D004353 ORTHO05D004989 3.6e-15 86.7 127 42.5
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 4.7e-15 86.3 122 39.3
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 7.9e-15 85.5 165 41.8
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 1.0e-14 85.1 176 31.8
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 3.0e-14 83.6 248 32.7
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 3.9e-14 83.2 246 33.7
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 6.7e-14 82.4 224 38.8
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 6.7e-14 82.4 224 38.8
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 6.7e-14 82.4 224 38.8
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 6.7e-14 82.4 133 46.6
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 8.8e-14 82.0 127 37.8
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 2.6e-13 80.5 181 39.2
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 2.6e-13 80.5 184 34.2
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 7.4e-13 79.0 111 39.6
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 7.4e-13 79.0 170 37.1
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 9.7e-13 78.6 192 35.9
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 2.2e-12 77.4 192 35.4
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 4.8e-12 76.3 157 43.3
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 4.8e-12 76.3 104 39.4
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 1.4e-11 74.7 173 35.3
TPR.G36930 Trifolium pratense HOM05D004353 ORTHO05D004989 5.9e-10 69.3 162 40.7
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 8.5e-09 65.5 166 41.0
HPP92_005578 Vanilla planifolia HOM05D004353 ORTHO05D004989 1.5e-08 64.7 176 35.8
Nn1g09685 Nelumbo nucifera HOM05D004353 ORTHO05D004989 3.2e-08 63.5 245 25.3
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 4.2e-08 63.2 179 39.7
arahy.Tifrunner.gnm1.ann1.35HMJH Arachis hypogaea HOM05D004353 ORTHO05D004989 5.5e-08 62.8 171 38.6
arahy.Tifrunner.gnm1.ann1.I4T7AK Arachis hypogaea HOM05D004353 ORTHO05D004989 7.2e-08 62.4 171 38.0
HPP92_005597 Vanilla planifolia HOM05D004353 ORTHO05D004989 1.2e-07 61.6 200 33.0
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 2.7e-07 60.5 240 30.0
VMungo0540G0595 Vigna mungo HOM05D004353 ORTHO05D004989 4.7e-07 59.7 184 36.4
Actinidia06605 Actinidia chinensis HOM05D004353 ORTHO05D004989 1.4e-06 58.2 288 32.6
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 2.3e-06 57.4 223 26.9
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 3.0e-06 57.0 217 31.8


User provided reference genes

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