Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G0122 Erigeron canadensis HOM05D004975 ORTHO05D005963 1.2e-112 409.8 207 100.0
ECA248G2823 Erigeron canadensis HOM05D004975 ORTHO05D005963 3.4e-107 391.7 207 96.1
HanXRQChr01g0029381 Helianthus annuus HOM05D004975 ORTHO05D005963 3.8e-98 361.7 207 87.9
HanXRQChr11g0341541 Helianthus annuus HOM05D004975 ORTHO05D005963 4.9e-98 361.3 207 87.9
Lsat_1_v5_gn_1_49060 Lactuca sativa HOM05D004975 ORTHO05D005963 1.1e-94 350.1 202 86.1
Actinidia13302 Actinidia chinensis HOM05D004975 ORTHO05D005963 1.4e-84 316.6 207 76.8
CSS0002597 Camellia sinensis var. sinensis HOM05D004975 ORTHO05D005963 1.4e-84 316.6 212 76.4
Dinv30242 Davidia involucrata HOM05D004975 ORTHO05D005963 6.5e-82 307.8 217 73.3
Actinidia13417 Actinidia chinensis HOM05D004975 ORTHO05D005963 1.1e-81 307.0 214 74.3
Hma1.2p1_0140F.1_g063690 Hydrangea macrophylla HOM05D004975 ORTHO05D005963 4.2e-81 305.1 217 71.0
Ciclev10009422m.g Citrus clementina HOM05D004975 ORTHO05D005963 1.0e-79 300.4 200 72.5
Solyc08g065760.3 Solanum lycopersicum HOM05D004975 ORTHO05D005963 1.0e-79 300.4 213 71.8
Sopen10g033590 Solanum pennellii HOM05D004975 ORTHO05D005963 1.0e-79 300.4 213 71.8
CiPaw.08G019900 Carya illinoinensis HOM05D004975 ORTHO05D005963 5.1e-79 298.1 222 68.0
PGSC0003DMG400013829 Solanum tuberosum HOM05D004975 ORTHO05D005963 6.7e-79 297.7 213 70.9
CiPaw.01G062200 Carya illinoinensis HOM05D004975 ORTHO05D005963 8.8e-79 297.4 222 68.0
Cc08_g08560 Coffea canephora HOM05D004975 ORTHO05D005963 1.1e-78 297.0 200 72.5
TAR383G0773 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.1e-78 297.0 200 74.0
TAR625G0147 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.5e-78 296.6 200 74.0
Nitab4.5_0000250g0160 Nicotiana tabacum HOM05D004975 ORTHO05D005963 3.3e-78 295.4 213 70.9
Peaxi162Scf00105g00510 Petunia axillaris HOM05D004975 ORTHO05D005963 5.7e-78 294.7 213 69.0
Potri.018G006900 Populus trichocarpa HOM05D004975 ORTHO05D005963 7.4e-78 294.3 188 76.6
Nitab4.5_0002393g0070 Nicotiana tabacum HOM05D004975 ORTHO05D005963 1.7e-77 293.1 208 70.7
COL.COLO4_19031 Corchorus olitorius HOM05D004975 ORTHO05D005963 6.3e-77 291.2 221 67.9
Cpa.g.sc6.221 Carica papaya HOM05D004975 ORTHO05D005963 4.1e-76 288.5 222 67.1
Sopen08g019440 Solanum pennellii HOM05D004975 ORTHO05D005963 5.3e-76 288.1 178 78.1
PGR044G1665 Punica granatum HOM05D004975 ORTHO05D005963 6.9e-76 287.7 209 69.9
QL12p025158 Quercus lobata HOM05D004975 ORTHO05D005963 6.9e-76 287.7 200 72.0
SGA_v2.0_scaffold229G43318 Striga asiatica HOM05D004975 ORTHO05D005963 9.1e-76 287.3 205 70.7
Atru.chr7.2646 Acer truncatum HOM05D004975 ORTHO05D005963 1.2e-75 287.0 191 71.2
Duzib187G1289 Durio zibethinus HOM05D004975 ORTHO05D005963 1.2e-75 287.0 218 67.0
TAR383G0873 Trochodendron aralioides HOM05D004975 ORTHO05D005963 1.5e-75 286.6 180 78.9
SGA_v2.0_scaffold27G11528 Striga asiatica HOM05D004975 ORTHO05D005963 2.0e-75 286.2 213 69.5
MSTRG.11721 Avicennia marina HOM05D004975 ORTHO05D005963 2.6e-75 285.8 220 66.4
CsaV3_3G001030 Cucumis sativus L. HOM05D004975 ORTHO05D005963 2.6e-75 285.8 192 72.9
Thecc.09G007400 Theobroma cacao HOM05D004975 ORTHO05D005963 2.6e-75 285.8 190 73.7
DCAR_007697 Daucus carota HOM05D004975 ORTHO05D005963 5.9e-75 284.6 210 68.6
Eucgr.H01931 Eucalyptus grandis HOM05D004975 ORTHO05D005963 7.7e-75 284.3 200 71.0
Sc24g0001980 Simmondsia chinensis HOM05D004975 ORTHO05D005963 7.7e-75 284.3 217 69.1
ClCG10G000990 Citrullus lanatus HOM05D004975 ORTHO05D005963 1.3e-74 283.5 188 74.5
MELO3C013792.2 Cucumis melo HOM05D004975 ORTHO05D005963 2.2e-74 282.7 201 70.6
CANSAT25G3538 Cannabis sativa HOM05D004975 ORTHO05D005963 2.5e-73 279.3 200 69.5
Gorai.001G069100 Gossypium raimondii HOM05D004975 ORTHO05D005963 2.5e-73 279.3 214 67.8
CANSAT64G0033 Cannabis sativa HOM05D004975 ORTHO05D005963 4.2e-73 278.5 200 69.5
Manes.17G086700 Manihot esculenta HOM05D004975 ORTHO05D005963 4.2e-73 278.5 211 66.8
Sed0019969 Sechium edule HOM05D004975 ORTHO05D005963 4.2e-73 278.5 211 65.4
Gohir.A07G060900 Gossypium hirsutum HOM05D004975 ORTHO05D005963 7.2e-73 277.7 214 67.8
THA.LOC104803875 Tarenaya hassleriana HOM05D004975 ORTHO05D005963 7.2e-73 277.7 216 66.2
Migut.A00251 Erythranthe guttata HOM05D004975 ORTHO05D005963 9.4e-73 277.3 215 66.0
TWI34G1428 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 1.2e-72 276.9 208 67.3
arahy.Tifrunner.gnm1.ann1.1NF0KF Arachis hypogaea HOM05D004975 ORTHO05D005963 2.1e-72 276.2 205 66.8
unitig_46.g18530 Utricularia gibba HOM05D004975 ORTHO05D005963 2.1e-72 276.2 178 73.0
Hund22233 Selenicereus undatus HOM05D004975 ORTHO05D005963 2.7e-72 275.8 217 65.9
GSVIVG01009932001 Vitis vinifera HOM05D004975 ORTHO05D005963 2.7e-72 275.8 222 66.7
Psat6g036480 Pisum sativum HOM05D004975 ORTHO05D005963 3.6e-72 275.4 197 69.0
Hund06848 Selenicereus undatus HOM05D004975 ORTHO05D005963 4.7e-72 275.0 190 72.6
arahy.Tifrunner.gnm1.ann1.KS8K1P Arachis hypogaea HOM05D004975 ORTHO05D005963 8.0e-72 274.2 205 66.3
Duzib168G2230 Durio zibethinus HOM05D004975 ORTHO05D005963 2.3e-71 272.7 219 63.5
MBI16_g41808_MAGBIO Magnolia biondii HOM05D004975 ORTHO05D005963 2.3e-71 272.7 195 70.3
TWI63G0658 Tripterygium wilfordii HOM05D004975 ORTHO05D005963 2.3e-71 272.7 209 66.5
Phvul.011G072600 Phaseolus vulgaris HOM05D004975 ORTHO05D005963 3.9e-71 271.9 196 67.9
EL10Ac2g04836 Beta vulgaris HOM05D004975 ORTHO05D005963 5.2e-71 271.6 211 66.4
Glyma.12G071700 Glycine max HOM05D004975 ORTHO05D005963 6.7e-71 271.2 195 67.7
Gohir.D07G065600 Gossypium hirsutum HOM05D004975 ORTHO05D005963 1.1e-70 270.4 214 68.2
ATR0580G184 Amborella trichopoda HOM05D004975 ORTHO05D005963 2.0e-70 269.6 191 70.2
TPR.G24523 Trifolium pratense HOM05D004975 ORTHO05D005963 2.0e-70 269.6 180 72.8
Aqoxy7G00181 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 2.6e-70 269.2 190 69.5
Ah.06g191340 Amaranthus hybridus HOM05D004975 ORTHO05D005963 3.3e-70 268.9 215 63.3
Glyma.11G153169 Glycine max HOM05D004975 ORTHO05D005963 3.3e-70 268.9 195 66.7
VMungo1127G2243 Vigna mungo HOM05D004975 ORTHO05D005963 4.4e-70 268.5 187 69.5
arahy.Tifrunner.gnm1.ann1.GL41SS Arachis hypogaea HOM05D004975 ORTHO05D005963 5.7e-70 268.1 205 64.4
Lalb_Chr18g0045061 Lupinus albus HOM05D004975 ORTHO05D005963 7.4e-70 267.7 200 65.5
Lj3g0015990 Lotus japonicus HOM05D004975 ORTHO05D005963 1.7e-69 266.5 196 66.3
Lj3g0002799 Lotus japonicus HOM05D004975 ORTHO05D005963 2.8e-69 265.8 211 63.0
Medtr1g007480 Medicago truncatula HOM05D004975 ORTHO05D005963 2.8e-69 265.8 195 67.2
AL7G20600 Arabidopsis lyrata HOM05D004975 ORTHO05D005963 2.0e-67 259.6 203 64.0
Ca_12771_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 2.0e-67 259.6 194 65.5
CARHR239350 Cardamine hirsuta HOM05D004975 ORTHO05D005963 2.6e-67 259.2 178 68.5
Aa31LG2G18860 Aethionema arabicum HOM05D004975 ORTHO05D005963 7.7e-67 257.7 209 64.6
Rhsim04G0150100 Rhododendron simsii HOM05D004975 ORTHO05D005963 1.0e-66 257.3 207 65.7
CDE05G0021 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 1.3e-66 256.9 207 62.3
Sabra18G0014600 Salix brachista HOM05D004975 ORTHO05D005963 2.2e-66 256.1 283 50.9
AT4G31460 Arabidopsis thaliana HOM05D004975 ORTHO05D005963 3.8e-66 255.4 175 70.3
Thhalv10026230m.g Eutrema salsugineum HOM05D004975 ORTHO05D005963 6.5e-66 254.6 215 61.4
EL10Ac4g08846 Beta vulgaris HOM05D004975 ORTHO05D005963 8.5e-66 254.2 196 66.3
Zm00001eb323470 Zea mays HOM05D004975 ORTHO05D005963 1.9e-65 253.1 205 62.9
A01p06810 Brassica napus HOM05D004975 ORTHO05D005963 2.5e-65 252.7 214 61.2
BraA01t00633Z Brassica rapa HOM05D004975 ORTHO05D005963 2.5e-65 252.7 214 61.2
CDE02G4585 Ceratophyllum demersum HOM05D004975 ORTHO05D005963 4.2e-65 251.9 174 70.1
C01p07550 Brassica napus HOM05D004975 ORTHO05D005963 5.5e-65 251.5 214 60.7
BolC1t00736H Brassica oleracea HOM05D004975 ORTHO05D005963 5.5e-65 251.5 214 60.7
Carub.0007s0909 Capsella rubella HOM05D004975 ORTHO05D005963 1.2e-64 250.4 170 69.4
Os07g0544900 Oryza sativa ssp. japonica HOM05D004975 ORTHO05D005963 1.2e-64 250.4 191 66.0
BcaC09g51928 Brassica carinata HOM05D004975 ORTHO05D005963 1.6e-64 250.0 170 70.0
BraA08t33823Z Brassica rapa HOM05D004975 ORTHO05D005963 1.6e-64 250.0 217 59.4
HPP92_011116 Vanilla planifolia HOM05D004975 ORTHO05D005963 1.6e-64 250.0 175 69.1
arahy.Tifrunner.gnm1.ann1.57HDZK Arachis hypogaea HOM05D004975 ORTHO05D005963 2.1e-64 249.6 205 62.9
BcaB03g12697 Brassica carinata HOM05D004975 ORTHO05D005963 2.1e-64 249.6 217 59.4
BcaNung04586 Brassica carinata HOM05D004975 ORTHO05D005963 2.7e-64 249.2 169 69.8
SHI04272 Sapria himalayana HOM05D004975 ORTHO05D005963 3.6e-64 248.8 191 62.8
Sp7g29320 Schrenkiella parvula HOM05D004975 ORTHO05D005963 6.1e-64 248.1 217 59.0
A08p18600 Brassica napus HOM05D004975 ORTHO05D005963 8.0e-64 247.7 217 59.0
BcaC01g01087 Brassica carinata HOM05D004975 ORTHO05D005963 1.8e-63 246.5 217 59.0
C03p87960 Brassica napus HOM05D004975 ORTHO05D005963 1.8e-63 246.5 217 59.0
BolC3t21107H Brassica oleracea HOM05D004975 ORTHO05D005963 1.8e-63 246.5 217 59.0
FvH4_2g36661 Fragaria vesca HOM05D004975 ORTHO05D005963 4.4e-62 241.9 227 59.0
RcHm_v2.0_Chr6g0305011 Rosa chinensis HOM05D004975 ORTHO05D005963 5.7e-62 241.5 223 60.1
Zm00001eb106440 Zea mays HOM05D004975 ORTHO05D005963 1.7e-61 240.0 191 63.9
FAN20G1154 Fragaria x ananassa HOM05D007251 ORTHO05D009266 8.2e-61 237.7 227 57.7
Haze_21744 Corylus avellana HOM05D004975 ORTHO05D005963 1.2e-59 233.8 286 46.5
MD08G1128100 Malus domestica HOM05D004975 ORTHO05D005963 5.5e-57 224.9 240 52.1
PSO170G1562 Papaver somniferum HOM05D004975 ORTHO05D005963 2.7e-56 222.6 210 56.7
Prupe.1G459900 Prunus persica HOM05D004975 ORTHO05D005963 6.1e-56 221.5 241 51.0
MD15G1107600 Malus domestica HOM05D004975 ORTHO05D005963 8.0e-56 221.1 240 51.2
PSO063G2087 Papaver somniferum HOM05D004975 ORTHO05D005963 2.3e-55 219.5 210 56.2
PSO063G4606 Papaver somniferum HOM05D004975 ORTHO05D005963 3.0e-55 219.2 213 55.4
SEGI_29047 Sequoiadendron giganteum HOM05D004975 ORTHO05D005963 1.2e-51 207.2 177 59.9
PSO782G1312 Papaver somniferum HOM05D004975 ORTHO05D005963 5.9e-51 204.9 141 68.8
FvH4_7g03740 Fragaria vesca HOM05D004975 ORTHO05D005963 7.7e-51 204.5 147 68.7
FAN06G0478 Fragaria x ananassa HOM05D004975 ORTHO05D005963 1.0e-50 204.1 197 57.9
Manes.15G137600 Manihot esculenta HOM05D004975 ORTHO05D005963 5.0e-50 201.8 211 51.7
Lj7C709T7 Lonicera japonica HOM05D004975 ORTHO05D005963 1.5e-49 200.3 147 69.4
Nn2g12690 Nelumbo nucifera HOM05D004975 ORTHO05D005963 2.6e-46 189.5 134 70.1
CAN.G886.9 Capsicum annuum HOM05D004975 ORTHO05D005963 2.8e-45 186.0 148 64.9
AUR62027460 Chenopodium quinoa HOM05D004975 ORTHO05D005963 1.2e-43 180.6 151 62.9
Ca_29761_v3 Cicer arietinum L. HOM05D004975 ORTHO05D005963 1.3e-42 177.2 131 65.6
Oeu031567.1 Olea europaea HOM05D004975 ORTHO05D005963 2.9e-42 176.0 153 60.1
HPP92_011121 Vanilla planifolia HOM05D004975 ORTHO05D005963 5.0e-42 175.3 122 73.0
Cfa013273 Carpinus fangiana HOM05D004975 ORTHO05D005963 3.0e-39 166.0 143 60.8
AagrBONN_evm.TU.Sc2ySwM_117.1642 Anthoceros agrestis HOM05D004975 ORTHO05D005963 6.8e-39 164.9 131 62.6
vmacro05353 Vaccinium macrocarpon HOM05D004975 ORTHO05D005963 2.6e-38 162.9 137 62.8
Mapoly0026s0002 Marchantia polymorpha HOM05D004975 ORTHO05D005963 2.7e-35 152.9 113 60.2
Solyc10g038060.2 Solanum lycopersicum HOM05D004975 ORTHO05D005963 2.7e-35 152.9 173 51.4
Pp3c2_35700 Physcomitrium patens HOM05D004975 ORTHO05D005963 3.5e-35 152.5 108 63.9
SMO367G1088 Selaginella moellendorffii HOM05D004975 ORTHO05D005963 1.0e-34 151.0 113 63.7
BcaC01g01097 Brassica carinata HOM05D004975 ORTHO05D005963 6.8e-31 138.3 94 68.1
C03p88060 Brassica napus HOM05D004975 ORTHO05D005963 1.2e-30 137.5 92 68.5
BcaNung01521 Brassica carinata HOM05D004975 ORTHO05D005963 1.3e-26 124.0 132 53.0
BcaNung04139 Brassica carinata HOM05D004975 ORTHO05D005963 1.3e-26 124.0 132 53.0
Aqoxy3G03669 Aquilegia oxysepala HOM05D004975 ORTHO05D005963 4.1e-20 102.4 89 60.7
Sopen10g011390 Solanum pennellii HOM05D004975 ORTHO05D005963 3.0e-18 96.3 64 70.3
AUR62027459 Chenopodium quinoa HOM05D004975 ORTHO05D005963 8.6e-18 94.7 67 68.7
PRCOL_00000323 Prasinoderma coloniale HOM05D004975 ORTHO05D005963 1.6e-16 90.5 113 42.5
BcaB03g12699 Brassica carinata HOM05D004975 ORTHO05D005963 4.0e-15 85.9 94 46.8
Oeu033208.1 Olea europaea HOM05D004975 ORTHO05D005963 1.3e-13 80.9 101 49.5
Cfa025056 Carpinus fangiana HOM05D004975 ORTHO05D005963 2.2e-13 80.1 78 48.7
CBR_g8145 Chara braunii HOM05D004975 ORTHO05D005963 9.2e-12 74.7 54 61.1
CiPaw.07G212300 Carya illinoinensis HOM05D004975 ORTHO05D005963 2.5e-09 66.6 48 62.5
AagrBONN_evm.TU.Sc2ySwM_368.1480 Anthoceros agrestis HOM05D001654 ORTHO05D002773 3.3e-09 66.2 45 60.0


User provided reference genes

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