Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 2.6e-73 278.5 129 100.0
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 1.5e-39 166.4 132 59.1
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 1.6e-33 146.4 131 55.0
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 6.1e-22 107.8 118 44.9
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 8.9e-21 104.0 115 43.5
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 2.6e-20 102.4 115 41.7
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 4.4e-20 101.7 115 44.3
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 2.9e-19 99.0 127 41.7
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 3.7e-19 98.6 129 42.6
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 6.4e-19 97.8 122 39.3
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 4.6e-17 91.7 115 42.6
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 2.3e-16 89.4 119 40.3
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 3.0e-16 89.0 122 39.3
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 3.9e-16 88.6 116 44.0
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 5.0e-16 88.2 120 40.8
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 5.0e-16 88.2 116 39.7
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 6.6e-16 87.8 115 41.7
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 1.1e-15 87.0 116 40.5
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 1.5e-15 86.7 115 40.0
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 2.5e-15 85.9 117 40.2
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 7.3e-15 84.3 115 39.1
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 1.6e-14 83.2 122 37.7
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 1.6e-14 83.2 115 40.0
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 2.1e-14 82.8 122 36.9
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 2.1e-14 82.8 115 35.7
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 3.6e-14 82.0 115 39.1
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 4.7e-14 81.6 120 36.7
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 8.0e-14 80.9 107 41.1
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 1.1e-13 80.5 115 37.4
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 1.4e-13 80.1 115 36.5
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 1.8e-13 79.7 115 37.4
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 2.3e-13 79.3 115 39.1
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 2.3e-13 79.3 115 37.4
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 3.1e-13 79.0 116 36.2
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.2e-12 77.0 116 38.8
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 1.2e-12 77.0 118 38.1
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.5e-12 76.6 116 37.9
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 2.0e-12 76.3 117 36.8
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 3.4e-12 75.5 117 35.9
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 9.8e-12 73.9 114 37.7
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 1.3e-11 73.6 116 37.9
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 1.3e-11 73.6 116 37.9
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 6.4e-11 71.2 100 40.0
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 1.4e-10 70.1 114 36.8
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 1.9e-10 69.7 114 35.1
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 2.4e-10 69.3 121 32.2
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 3.2e-10 68.9 120 33.3
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 7.0e-10 67.8 117 37.6
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 1.6e-09 66.6 114 34.2
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 2.0e-09 66.2 115 32.2
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 2.0e-09 66.2 115 35.7
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 3.5e-09 65.5 117 36.8
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 3.5e-09 65.5 115 30.4
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 7.8e-09 64.3 114 35.1
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 7.8e-09 64.3 118 34.7
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 1.0e-08 63.9 120 32.5
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 1.7e-08 63.2 112 30.4
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 2.3e-08 62.8 91 39.6
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 5.0e-08 61.6 116 34.5
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 8.6e-08 60.8 118 33.1
Lsat_1_v5_gn_9_112100 Lactuca sativa HOM05D001524 ORTHO05D001392 1.1e-07 60.5 115 35.7
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 1.9e-07 59.7 115 35.7
AUR62039066 Chenopodium quinoa HOM05D001524 ORTHO05D001392 1.9e-07 59.7 115 32.2
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 1.9e-07 59.7 122 29.5
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 4.3e-07 58.5 110 31.8
Sopen01g030690 Solanum pennellii HOM05D001524 ORTHO05D001392 4.3e-07 58.5 112 33.9
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 5.6e-07 58.2 71 43.7
ECA240G3237 Erigeron canadensis HOM05D001524 ORTHO05D001392 7.3e-07 57.8 115 32.2
HanXRQChr03g0070321 Helianthus annuus HOM05D001524 ORTHO05D001392 7.3e-07 57.8 115 33.9
HanXRQChr03g0070441 Helianthus annuus HOM05D001524 ORTHO05D001392 7.3e-07 57.8 115 32.2
PGSC0003DMG400006276 Solanum tuberosum HOM05D001524 ORTHO05D001392 7.3e-07 57.8 112 35.7
CsaV3_7G008230 Cucumis sativus L. HOM05D001524 ORTHO05D001392 1.2e-06 57.0 115 29.6
Oeu018582.1 Olea europaea HOM05D001524 ORTHO05D001392 1.2e-06 57.0 105 34.3
Lj5g0022504 Lotus japonicus HOM05D001524 ORTHO05D001392 2.1e-06 56.2 115 33.9
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 2.8e-06 55.8 109 33.0
EL10Ac9g22263 Beta vulgaris HOM05D001524 ORTHO05D001392 2.8e-06 55.8 107 35.5
Ca_11066_v3 Cicer arietinum L. HOM05D001524 ORTHO05D001392 2.8e-06 55.8 115 31.3
Nitab4.5_0004326g0040 Nicotiana tabacum HOM05D001524 ORTHO05D001392 2.8e-06 55.8 112 33.9
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 2.8e-06 55.8 120 32.5
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 8.1e-06 54.3 116 33.6


User provided reference genes

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