Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 2.6e-209 731.9 389 100.0
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 5.3e-170 601.3 379 81.0
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 3.6e-166 588.6 374 81.0
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 4.5e-153 545.0 366 74.9
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 1.7e-152 543.1 316 82.6
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 1.5e-151 540.0 316 81.6
CSS0032429 Camellia sinensis var. sinensis HOM05D005969 ORTHO05D007407 1.9e-151 539.7 316 82.0
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 1.9e-151 539.7 322 80.4
CANSAT56G2142 Cannabis sativa HOM05D005969 ORTHO05D007407 7.2e-151 537.7 374 73.0
Haze_16671 Corylus avellana HOM05D005969 ORTHO05D007407 1.2e-150 537.0 361 72.3
GSVIVG01015969001 Vitis vinifera HOM05D005969 ORTHO05D007407 1.6e-150 536.6 316 81.3
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 2.1e-150 536.2 316 81.6
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 2.8e-150 535.8 350 73.4
Cfa001877 Carpinus fangiana HOM05D005969 ORTHO05D007407 2.8e-150 535.8 361 72.3
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 8.0e-150 534.3 316 82.0
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 1.0e-149 533.9 316 82.0
Lj3g0024544 Lotus japonicus HOM05D005969 ORTHO05D007407 1.0e-149 533.9 316 81.0
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.4e-149 533.5 321 79.8
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 1.8e-149 533.1 359 72.4
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 2.3e-149 532.7 363 72.2
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 2.3e-149 532.7 322 78.0
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 4.0e-149 531.9 322 79.2
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 4.0e-149 531.9 316 80.7
ClCG09G003350 Citrullus lanatus HOM05D005969 ORTHO05D007407 5.2e-149 531.6 322 78.9
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 6.8e-149 531.2 373 72.4
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 6.8e-149 531.2 347 74.4
CsaV3_7G031880 Cucumis sativus L. HOM05D005969 ORTHO05D007407 1.2e-148 530.4 322 78.9
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 1.5e-148 530.0 316 79.7
RcHm_v2.0_Chr2g0132911 Rosa chinensis HOM05D005969 ORTHO05D007407 1.5e-148 530.0 316 81.3
Aqoxy5G00978 Aquilegia oxysepala HOM05D005969 ORTHO05D007407 2.6e-148 529.3 368 70.7
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 2.6e-148 529.3 316 79.7
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 2.6e-148 529.3 368 72.0
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 4.4e-148 528.5 316 79.7
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 5.7e-148 528.1 374 70.3
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 9.8e-148 527.3 314 79.0
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 1.3e-147 526.9 316 79.7
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 1.7e-147 526.6 376 70.7
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 2.2e-147 526.2 364 70.1
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 2.8e-147 525.8 316 78.5
Solyc06g068480.3 Solanum lycopersicum HOM05D005969 ORTHO05D007407 2.8e-147 525.8 370 70.8
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 2.8e-147 525.8 316 79.4
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 6.3e-147 524.6 320 78.8
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 8.3e-147 524.2 348 74.7
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 8.3e-147 524.2 316 79.4
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 1.4e-146 523.5 320 78.8
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 1.4e-146 523.5 316 78.8
Medtr4g007190 Medicago truncatula HOM05D005969 ORTHO05D007407 1.4e-146 523.5 367 70.3
PGR102G2845 Punica granatum HOM05D005969 ORTHO05D007407 1.4e-146 523.5 322 77.6
ATR0807G102 Amborella trichopoda HOM05D005969 ORTHO05D007407 2.4e-146 522.7 316 78.5
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 3.2e-146 522.3 366 71.0
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 5.4e-146 521.5 314 80.9
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 9.2e-146 520.8 348 74.4
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 1.2e-145 520.4 316 78.2
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 1.2e-145 520.4 316 78.2
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 1.6e-145 520.0 348 74.1
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 3.5e-145 518.8 316 77.8
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 4.5e-145 518.5 361 70.4
DCAR_021370 Daucus carota HOM05D005969 ORTHO05D007407 7.8e-145 517.7 367 69.2
AT1G73060 Arabidopsis thaliana HOM05D005969 ORTHO05D007407 1.3e-144 516.9 348 73.3
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 1.3e-144 516.9 345 74.2
MSTRG.22801 Avicennia marina HOM05D005969 ORTHO05D007407 1.7e-144 516.5 316 76.9
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 1.7e-144 516.5 311 80.7
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 1.7e-144 516.5 311 80.7
AUR62030840 Chenopodium quinoa HOM05D005969 ORTHO05D007407 2.9e-144 515.8 371 68.7
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 5.0e-144 515.0 316 77.8
Atru.chr10.2417 Acer truncatum HOM05D005969 ORTHO05D007407 8.6e-144 514.2 357 73.7
Carub.0002s1982 Capsella rubella HOM05D005969 ORTHO05D007407 8.6e-144 514.2 316 78.2
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 1.1e-143 513.8 316 77.2
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 1.1e-143 513.8 372 68.3
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 2.5e-143 512.7 378 67.2
AL2G32810 Arabidopsis lyrata HOM05D005969 ORTHO05D007407 4.3e-143 511.9 348 72.4
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 4.3e-143 511.9 314 77.4
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 5.6e-143 511.5 339 74.0
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 2.1e-142 509.6 341 73.0
EL10Ac9g22204 Beta vulgaris HOM05D005969 ORTHO05D007407 8.0e-142 507.7 381 66.4
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.0e-141 507.3 316 77.2
SalBow7G3052 Salvia bowleyana HOM05D005969 ORTHO05D007407 2.2e-139 499.6 348 68.7
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 3.7e-139 498.8 352 69.0
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 2.7e-137 492.7 267 89.9
Os02g0117100 Oryza sativa ssp. japonica HOM05D005969 ORTHO05D007407 6.0e-137 491.5 316 73.7
Hund06517 Selenicereus undatus HOM05D005969 ORTHO05D007407 1.1e-135 487.3 353 69.4
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 1.8e-133 479.9 319 74.3
HPP92_025491 Vanilla planifolia HOM05D005969 ORTHO05D007407 2.0e-132 476.5 316 71.5
Peaxi162Scf00207g00440 Petunia axillaris HOM05D005969 ORTHO05D007407 4.1e-130 468.8 316 72.5
QL05p035856 Quercus lobata HOM05D005969 ORTHO05D007407 5.4e-130 468.4 276 79.3
Lj9C492T12 Lonicera japonica HOM05D005969 ORTHO05D007407 9.5e-127 457.6 268 80.6
unitig_27.g25102 Utricularia gibba HOM05D005969 ORTHO05D002795 1.4e-125 453.8 274 77.7
FAN05G1215 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.5e-124 450.3 269 80.7
Ah.01g024670 Amaranthus hybridus HOM05D005969 ORTHO05D007407 8.1e-118 427.9 369 61.8
vmacro19064 Vaccinium macrocarpon HOM05D005969 ORTHO05D007407 2.9e-115 419.5 259 78.0
HanXRQChr04g0099721 Helianthus annuus HOM05D005969 ORTHO05D007407 4.2e-114 415.6 290 75.2
Pp3c4_10300 Physcomitrium patens HOM05D005969 ORTHO05D007407 7.1e-114 414.8 316 63.9
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 1.0e-112 411.0 314 60.8
AagrBONN_evm.TU.Sc2ySwM_362.432 Anthoceros agrestis HOM05D005969 ORTHO05D007407 7.3e-111 404.8 322 59.6
HPP92_025442 Vanilla planifolia HOM05D005969 ORTHO05D007407 1.8e-109 400.2 268 69.0
Manes.11G065200 Manihot esculenta HOM05D005969 ORTHO05D007407 2.0e-108 396.7 291 67.4
SMO358G0640 Selaginella moellendorffii HOM05D005969 ORTHO05D007407 3.9e-104 382.5 314 57.6
arahy.Tifrunner.gnm1.ann1.9VR9ZH Arachis hypogaea HOM05D005969 ORTHO05D007407 4.3e-103 379.0 267 69.3
Prupe.3G098800 Prunus persica HOM05D005969 ORTHO05D007407 2.0e-100 370.2 221 81.0
arahy.Tifrunner.gnm1.ann1.5US335 Arachis hypogaea HOM05D005969 ORTHO05D007407 2.9e-99 366.3 272 66.5
FAN14G2562 Fragaria x ananassa HOM05D005969 ORTHO05D007407 4.3e-95 352.4 221 78.3
CARHR066030 Cardamine hirsuta HOM05D005969 ORTHO05D007407 7.9e-89 331.6 255 64.7
arahy.Tifrunner.gnm1.ann1.79PBZ8 Arachis hypogaea HOM05D005969 ORTHO05D007407 3.1e-77 293.1 269 61.0
MCO01G214 Micromonas commoda HOM05D005969 ORTHO05D007407 1.4e-72 277.7 324 42.6
MCO01G215 Micromonas commoda HOM05D005969 ORTHO05D007407 1.4e-72 277.7 324 42.6
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 2.5e-71 273.5 312 46.5
arahy.Tifrunner.gnm1.ann1.UJC0YQ Arachis hypogaea HOM05D005969 ORTHO05D007407 1.4e-69 267.7 273 52.7
Ca_20531_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 1.4e-69 267.7 164 78.0
PRCOL_00001281 Prasinoderma coloniale HOM05D005969 ORTHO05D007407 4.1e-69 266.2 334 43.4
Zm00001eb230040 Zea mays HOM05D005969 ORTHO05D007407 9.1e-69 265.0 164 75.0
Sc12g0008350 Simmondsia chinensis HOM05D005969 ORTHO05D007407 6.7e-64 248.8 150 78.0
Ca_20538_v3 Cicer arietinum L. HOM05D005969 ORTHO05D007407 5.0e-59 232.6 130 84.6
Hma1.2p1_0109F.1_g052630 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 4.2e-58 229.6 166 70.5
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 8.3e-38 162.2 91 83.5
MCO09G747 Micromonas commoda HOM05D005969 ORTHO05D007407 1.7e-35 154.5 386 30.8
CBR_g50572 Chara braunii HOM05D000019 ORTHO05D000048 9.5e-34 148.7 109 65.1
HanXRQChr04g0099751 Helianthus annuus HOM05D005969 ORTHO05D007407 3.6e-33 146.7 79 88.6
SEGI_39006 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 7.5e-31 139.0 85 74.1
Sc12g0008300 Simmondsia chinensis HOM05D005969 ORTHO05D007407 5.9e-28 129.4 90 70.0
CBR_g50568 Chara braunii HOM05D000004 ORTHO05D000002 7.8e-20 102.4 79 58.2
arahy.Tifrunner.gnm1.ann1.4WI1XR Arachis hypogaea HOM05D005969 ORTHO05D007407 3.9e-19 100.1 105 48.6
QL04p063552 Quercus lobata HOM05D005969 ORTHO05D007407 1.5e-15 88.2 74 63.5
HanXRQChr14g0426781 Helianthus annuus HOM05D005969 ORTHO05D007407 3.4e-15 87.0 47 89.4
Hma1.2p1_0109F.1_g052620 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 4.4e-15 86.7 54 70.4
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 1.3e-14 85.1 58 67.2
Glyma.07G022602 Glycine max HOM05D005969 ORTHO05D007407 1.1e-13 82.0 59 72.9
SEGI_03763 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.6e-12 78.2 49 73.5
SEGI_15560 Sequoiadendron giganteum HOM05D005969 ORTHO05D007407 1.6e-12 78.2 49 73.5
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 1.1e-10 72.0 289 26.0
HanXRQChr04g0099771 Helianthus annuus HOM05D005969 ORTHO05D007407 1.9e-10 71.2 42 85.7
Lj9C492T13 Lonicera japonica HOM05D005969 ORTHO05D007407 5.6e-10 69.7 69 55.1
TPR.G26782 Trifolium pratense HOM05D009488 ORTHO05D011222 1.2e-09 68.6 39 84.6
PGSC0003DMG400019818 Solanum tuberosum HOM05D005969 ORTHO05D007407 2.1e-09 67.8 95 43.2
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 3.6e-09 67.0 286 26.6
TPR.G23080 Trifolium pratense HOM05D005969 ORTHO05D007407 8.1e-09 65.9 38 84.2
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 1.4e-08 65.1 290 26.6
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 1.4e-08 65.1 293 25.3
QL05p035860 Quercus lobata HOM05D005969 ORTHO05D007407 1.4e-08 65.1 39 84.6
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 1.8e-08 64.7 292 26.4
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 3.1e-08 63.9 280 26.4
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 5.2e-08 63.2 286 28.7
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 5.2e-08 63.2 316 24.7
Potri.003G182801 Populus trichocarpa HOM05D005969 ORTHO05D007407 6.8e-08 62.8 75 46.7
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 8.9e-08 62.4 280 25.4
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 8.9e-08 62.4 284 26.1
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 1.5e-07 61.6 283 26.5
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 2.0e-07 61.2 293 25.9
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 3.4e-07 60.5 296 25.0
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 4.4e-07 60.1 298 26.5
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 5.8e-07 59.7 280 27.9
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 5.8e-07 59.7 283 25.4
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 7.6e-07 59.3 297 25.6
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 7.6e-07 59.3 282 25.2
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 7.6e-07 59.3 285 24.6
Psat6g223920 Pisum sativum HOM05D002710 ORTHO05D002905 9.9e-07 58.9 95 44.2
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 1.3e-06 58.5 285 25.3
arahy.Tifrunner.gnm1.ann1.GZLR9S Arachis hypogaea HOM05D005969 ORTHO05D007407 8.4e-06 55.8 33 72.7


User provided reference genes

Program Settings