Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G3935 Erigeron canadensis HOM05D002011 ORTHO05D001948 6.8e-90 334.3 219 100.0
HanXRQChr02g0034871 Helianthus annuus HOM05D002011 ORTHO05D001948 1.6e-33 147.1 204 52.0
HanXRQChr04g0098231 Helianthus annuus HOM05D002011 ORTHO05D001948 3.0e-29 132.9 204 47.5
Lsat_1_v5_gn_1_31661 Lactuca sativa HOM05D002011 ORTHO05D001948 5.0e-24 115.5 208 44.7
Dinv23313 Davidia involucrata HOM05D002011 ORTHO05D001948 3.5e-17 92.8 173 40.5
SGA_v2.0_scaffold37G14736 Striga asiatica HOM05D002011 ORTHO05D001948 1.3e-16 90.9 217 34.1
HanXRQChr09g0274671 Helianthus annuus HOM05D002011 ORTHO05D001948 2.9e-16 89.7 206 35.9
MD09G1223300 Malus domestica HOM05D002011 ORTHO05D001948 1.6e-14 84.0 186 38.7
Sc23g0006520 Simmondsia chinensis HOM05D002011 ORTHO05D001948 3.6e-14 82.8 186 35.5
MSTRG.22780 Avicennia marina HOM05D002011 ORTHO05D001948 1.0e-13 81.3 244 32.0
Lj5C77G14 Lonicera japonica HOM05D002011 ORTHO05D001948 1.0e-13 81.3 173 38.7
Prupe.3G095200 Prunus persica HOM05D002011 ORTHO05D001948 8.8e-13 78.2 183 37.7
CiPaw.01G252000 Carya illinoinensis HOM05D002011 ORTHO05D001948 1.5e-12 77.4 195 33.3
CiPaw.02G160500 Carya illinoinensis HOM05D002011 ORTHO05D001948 4.4e-12 75.9 84 58.3
MD17G1219700 Malus domestica HOM05D002011 ORTHO05D001948 4.4e-12 75.9 204 32.8
Thhalv10008783m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 5.7e-12 75.5 207 30.9
FvH4_6g29000 Fragaria vesca HOM05D002011 ORTHO05D001948 5.7e-12 75.5 174 36.8
FAN05G1371 Fragaria x ananassa HOM05D002011 ORTHO05D001948 5.7e-12 75.5 174 36.8
FAN05G4451 Fragaria x ananassa HOM05D002011 ORTHO05D001948 5.7e-12 75.5 174 36.8
Carub.0001s1559 Capsella rubella HOM05D002011 ORTHO05D001948 7.5e-12 75.1 208 34.6
Ciclev10026302m.g Citrus clementina HOM05D002011 ORTHO05D001948 7.5e-12 75.1 181 37.6
Cpa.g.sc10.124 Carica papaya HOM05D002011 ORTHO05D001948 9.8e-12 74.7 213 36.6
A06p11870 Brassica napus HOM05D002011 ORTHO05D001948 2.2e-11 73.6 212 34.0
C05p14050 Brassica napus HOM05D002011 ORTHO05D001948 2.2e-11 73.6 215 34.9
BolC5t30136H Brassica oleracea HOM05D002011 ORTHO05D001948 2.2e-11 73.6 215 34.9
FAN02G4077 Fragaria x ananassa HOM05D002011 ORTHO05D001948 2.2e-11 73.6 174 36.8
FAN09G3914 Fragaria x ananassa HOM05D002011 ORTHO05D001948 2.2e-11 73.6 175 36.0
FAN14G4768 Fragaria x ananassa HOM05D002011 ORTHO05D001948 2.2e-11 73.6 174 36.8
Sp5g35160 Schrenkiella parvula HOM05D002011 ORTHO05D001948 2.2e-11 73.6 205 32.2
Lj3g0008755 Lotus japonicus HOM05D002011 ORTHO05D001948 3.7e-11 72.8 174 33.9
AL1G27950 Arabidopsis lyrata HOM05D002011 ORTHO05D001948 4.9e-11 72.4 215 35.8
MSTRG.11167 Avicennia marina HOM05D002011 ORTHO05D001948 4.9e-11 72.4 183 36.6
CANSAT56G3958 Cannabis sativa HOM05D002011 ORTHO05D001948 4.9e-11 72.4 248 29.8
Sp1g14100 Schrenkiella parvula HOM05D002011 ORTHO05D001948 6.3e-11 72.0 214 35.5
BcaB02g07260 Brassica carinata HOM05D002011 ORTHO05D001948 8.3e-11 71.6 205 32.2
BraA06t24357Z Brassica rapa HOM05D002011 ORTHO05D001948 8.3e-11 71.6 212 33.0
AL2G40840 Arabidopsis lyrata HOM05D002011 ORTHO05D001948 1.1e-10 71.2 207 37.2
A07p45090 Brassica napus HOM05D002011 ORTHO05D001948 1.1e-10 71.2 208 33.2
CARHR016310 Cardamine hirsuta HOM05D002011 ORTHO05D001948 1.1e-10 71.2 211 32.7
A07p26760 Brassica napus HOM05D000930 ORTHO05D001948 1.4e-10 70.9 210 32.9
Migut.I00725 Erythranthe guttata HOM05D002011 ORTHO05D001948 1.4e-10 70.9 239 29.3
Nitab4.5_0005934g0050 Nicotiana tabacum HOM05D002011 ORTHO05D001948 1.4e-10 70.9 253 33.2
BcaC08g45329 Brassica carinata HOM05D002011 ORTHO05D001948 1.8e-10 70.5 205 32.2
BolC6t38103H Brassica oleracea HOM05D000930 ORTHO05D001948 1.8e-10 70.5 205 32.2
Cfa013098 Carpinus fangiana HOM05D002011 ORTHO05D001948 1.8e-10 70.5 173 37.6
VMungo1080G1625 Vigna mungo HOM05D002011 ORTHO05D001948 1.8e-10 70.5 176 35.2
Actinidia13206 Actinidia chinensis HOM05D002011 ORTHO05D001948 2.4e-10 70.1 177 35.6
MSTRG.9415 Avicennia marina HOM05D002011 ORTHO05D001948 2.4e-10 70.1 181 35.9
C06p29390 Brassica napus HOM05D000930 ORTHO05D001948 2.4e-10 70.1 209 32.1
Lalb_Chr22g0350711 Lupinus albus HOM05D002011 ORTHO05D001948 2.4e-10 70.1 220 31.8
BraA07t32012Z Brassica rapa HOM05D002011 ORTHO05D001948 3.1e-10 69.7 209 33.0
Cc04_g04820 Coffea canephora HOM05D002011 ORTHO05D001948 3.1e-10 69.7 193 37.8
THA.LOC104813579 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 3.1e-10 69.7 230 30.0
BcaB03g14520 Brassica carinata HOM05D002011 ORTHO05D001948 4.1e-10 69.3 217 34.6
SalBow7G0591 Salvia bowleyana HOM05D002011 ORTHO05D001948 4.1e-10 69.3 172 34.9
CiPaw.07G227200 Carya illinoinensis HOM05D002011 ORTHO05D001948 5.4e-10 68.9 175 35.4
C02p37050 Brassica napus HOM05D002011 ORTHO05D001948 7.0e-10 68.6 204 32.4
arahy.Tifrunner.gnm1.ann1.ZE8HCZ Arachis hypogaea HOM05D002011 ORTHO05D001948 9.2e-10 68.2 227 30.4
CiPaw.08G008100 Carya illinoinensis HOM05D002011 ORTHO05D001948 9.2e-10 68.2 173 34.7
Actinidia22311 Actinidia chinensis HOM05D002011 ORTHO05D001948 1.2e-09 67.8 180 34.4
A09p61180 Brassica napus HOM05D002011 ORTHO05D001948 1.2e-09 67.8 206 36.9
BraA09t41492Z Brassica rapa HOM05D002011 ORTHO05D001948 1.2e-09 67.8 206 36.9
arahy.Tifrunner.gnm1.ann1.H5ECBD Arachis hypogaea HOM05D002011 ORTHO05D001948 1.6e-09 67.4 155 41.3
arahy.Tifrunner.gnm1.ann1.W5XW0C Arachis hypogaea HOM05D002011 ORTHO05D001948 1.6e-09 67.4 155 41.3
BcaB05g25241 Brassica carinata HOM05D002011 ORTHO05D001948 1.6e-09 67.4 206 30.1
BcaC07g41480 Brassica carinata HOM05D002011 ORTHO05D001948 1.6e-09 67.4 211 34.1
C08p44770 Brassica napus HOM05D002011 ORTHO05D001948 1.6e-09 67.4 211 32.2
Nn8g39727 Nelumbo nucifera HOM05D002011 ORTHO05D001948 1.6e-09 67.4 213 32.4
Prupe.1G486600 Prunus persica HOM05D002011 ORTHO05D001948 1.6e-09 67.4 181 32.6
CSS0035080 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 2.0e-09 67.0 180 34.4
AT1G15800 Arabidopsis thaliana HOM05D002011 ORTHO05D001948 2.7e-09 66.6 204 34.8
BcaC03g15943 Brassica carinata HOM05D002011 ORTHO05D001948 2.7e-09 66.6 204 31.9
BraA02t07327Z Brassica rapa HOM05D002011 ORTHO05D001948 2.7e-09 66.6 204 31.9
SGA_v2.0_scaffold26G11326 Striga asiatica HOM05D002011 ORTHO05D001948 2.7e-09 66.6 71 52.1
Actinidia23086 Actinidia chinensis HOM05D002011 ORTHO05D001948 3.5e-09 66.2 175 34.3
Psat5g304320 Pisum sativum HOM05D002011 ORTHO05D001948 3.5e-09 66.2 113 44.2
SGA_v2.0_scaffold5G02744 Striga asiatica HOM05D002011 ORTHO05D001948 3.5e-09 66.2 144 37.5
A02p23330 Brassica napus HOM05D002011 ORTHO05D001948 4.5e-09 65.9 204 33.3
C06p53920 Brassica napus HOM05D002011 ORTHO05D001948 4.5e-09 65.9 205 32.7
CSS0010574 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 4.5e-09 65.9 180 32.8
Glyma.15G004800 Glycine max HOM05D002011 ORTHO05D001948 4.5e-09 65.9 247 29.6
Sabra17G0045900 Salix brachista HOM05D002011 ORTHO05D001948 4.5e-09 65.9 210 31.9
arahy.Tifrunner.gnm1.ann1.KH3NQE Arachis hypogaea HOM05D002011 ORTHO05D001948 5.9e-09 65.5 227 30.0
Sabra17G0040900 Salix brachista HOM05D002011 ORTHO05D001948 5.9e-09 65.5 210 31.9
BolC2t09720H Brassica oleracea HOM05D002011 ORTHO05D001948 7.8e-09 65.1 204 31.4
Manes.16G126300 Manihot esculenta HOM05D002011 ORTHO05D001948 7.8e-09 65.1 179 32.4
Phvul.005G181100 Phaseolus vulgaris HOM05D002011 ORTHO05D001948 1.0e-08 64.7 174 33.3
Carub.0002s2694 Capsella rubella HOM05D002011 ORTHO05D001948 1.3e-08 64.3 208 29.8
Migut.D01093 Erythranthe guttata HOM05D002011 ORTHO05D001948 1.3e-08 64.3 236 29.2
Solyc03g117210.4 Solanum lycopersicum HOM05D002011 ORTHO05D001948 1.3e-08 64.3 91 47.3
Sopen03g036120 Solanum pennellii HOM05D002011 ORTHO05D001948 1.3e-08 64.3 91 47.3
BraA07t30319Z Brassica rapa HOM05D000930 ORTHO05D001948 2.3e-08 63.5 214 30.8
CAN.G407.39 Capsicum annuum HOM05D002011 ORTHO05D001948 2.3e-08 63.5 116 40.5
Medtr3g106340 Medicago truncatula HOM05D002011 ORTHO05D001948 2.3e-08 63.5 212 29.7
QL05p034085 Quercus lobata HOM05D002011 ORTHO05D001948 2.3e-08 63.5 178 34.8
Sed0008145 Sechium edule HOM05D002011 ORTHO05D001948 2.3e-08 63.5 58 65.5
Aa31LG11G4430 Aethionema arabicum HOM05D002011 ORTHO05D001948 2.9e-08 63.2 210 29.0
unitig_60.g25613 Utricularia gibba HOM05D002011 ORTHO05D001948 2.9e-08 63.2 206 29.6
BolC6t40406H Brassica oleracea HOM05D002011 ORTHO05D001948 3.8e-08 62.8 207 32.4
Ciclev10009242m.g Citrus clementina HOM05D002011 ORTHO05D001948 3.8e-08 62.8 242 30.2
MD08G1154000 Malus domestica HOM05D002011 ORTHO05D001948 3.8e-08 62.8 178 31.5
Oeu010089.1 Olea europaea HOM05D002011 ORTHO05D001948 3.8e-08 62.8 171 33.9
Peaxi162Scf00332g00224 Petunia axillaris HOM05D002011 ORTHO05D001948 3.8e-08 62.8 182 38.5
PGR044G0932 Punica granatum HOM05D002011 ORTHO05D001948 3.8e-08 62.8 187 32.1
Glyma.06G065100 Glycine max HOM05D002011 ORTHO05D001948 6.6e-08 62.0 178 30.9
Oeu027834.1 Olea europaea HOM05D002011 ORTHO05D001948 6.6e-08 62.0 215 31.6
TWI63G1833 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 6.6e-08 62.0 176 41.5
Aa31LG7G400 Aethionema arabicum HOM05D002011 ORTHO05D001948 8.6e-08 61.6 215 33.5
COL.COLO4_18921 Corchorus olitorius HOM05D002011 ORTHO05D001948 8.6e-08 61.6 60 55.0
MD15G1131300 Malus domestica HOM05D002011 ORTHO05D001948 8.6e-08 61.6 189 31.7
QL02p020109 Quercus lobata HOM05D002011 ORTHO05D001948 1.1e-07 61.2 274 28.1
THA.LOC104813311 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 1.1e-07 61.2 104 41.3
GSVIVG01035917001 Vitis vinifera HOM05D002011 ORTHO05D001948 1.1e-07 61.2 84 50.0
Ca_15760_v3 Cicer arietinum L. HOM05D002011 ORTHO05D001948 1.5e-07 60.8 193 30.6
ClCG05G016560 Citrullus lanatus HOM05D002011 ORTHO05D001948 1.5e-07 60.8 87 49.4
CsaV3_4G036820 Cucumis sativus L. HOM05D002011 ORTHO05D001948 1.5e-07 60.8 87 50.6
Lsat_1_v5_gn_6_115360 Lactuca sativa HOM05D002011 ORTHO05D001948 1.5e-07 60.8 207 32.9
Psat7g258520 Pisum sativum HOM05D002011 ORTHO05D001948 1.5e-07 60.8 174 36.2
MELO3C016985.2 Cucumis melo HOM05D002011 ORTHO05D001948 1.9e-07 60.5 87 49.4
PGR102G1217 Punica granatum HOM05D002011 ORTHO05D001948 1.9e-07 60.5 84 46.4
RcHm_v2.0_Chr6g0297181 Rosa chinensis HOM05D002011 ORTHO05D001948 1.9e-07 60.5 185 31.9
Thhalv10025671m.g Eutrema salsugineum HOM05D002011 ORTHO05D001948 2.5e-07 60.1 237 28.3
Eucgr.C01684 Eucalyptus grandis HOM05D002011 ORTHO05D001948 3.3e-07 59.7 84 51.2
FAN24G0280 Fragaria x ananassa HOM05D002011 ORTHO05D001948 3.3e-07 59.7 181 31.5
CARHR239930 Cardamine hirsuta HOM05D002011 ORTHO05D001948 4.3e-07 59.3 242 28.1
Duzib187G1916 Durio zibethinus HOM05D002011 ORTHO05D001948 4.3e-07 59.3 185 29.7
FAN20G1038 Fragaria x ananassa HOM05D002011 ORTHO05D001948 4.3e-07 59.3 184 31.0
Phvul.009G090200 Phaseolus vulgaris HOM05D002011 ORTHO05D001948 4.3e-07 59.3 213 29.1
Potri.017G053900 Populus trichocarpa HOM05D002011 ORTHO05D001948 4.3e-07 59.3 194 32.5
Ca_25896_v3 Cicer arietinum L. HOM05D002011 ORTHO05D001948 5.6e-07 58.9 196 33.7
Sed0021865 Sechium edule HOM05D002011 ORTHO05D001948 5.6e-07 58.9 174 32.2
EL10Ac2g04150 Beta vulgaris HOM05D002011 ORTHO05D001948 7.3e-07 58.5 197 30.5
BcaC01g01041 Brassica carinata HOM05D002011 ORTHO05D001948 7.3e-07 58.5 241 26.6
BolC3t21060H Brassica oleracea HOM05D002011 ORTHO05D001948 7.3e-07 58.5 241 26.6
SHI11259 Sapria himalayana HOM05D002011 ORTHO05D001948 7.3e-07 58.5 200 31.0
Hund03478 Selenicereus undatus HOM05D002011 ORTHO05D001948 7.3e-07 58.5 180 31.7
TAR636G1642 Trochodendron aralioides HOM05D002011 ORTHO05D001948 7.3e-07 58.5 174 35.6
AUR62012450 Chenopodium quinoa HOM05D002011 ORTHO05D001948 9.5e-07 58.2 187 34.2
Dinv03417 Davidia involucrata HOM05D002011 ORTHO05D001948 9.5e-07 58.2 183 32.2
Eucgr.F03942 Eucalyptus grandis HOM05D002011 ORTHO05D001948 9.5e-07 58.2 191 41.9
TPR.G8906 Trifolium pratense HOM05D002011 ORTHO05D001948 9.5e-07 58.2 72 45.8
vmacro19034 Vaccinium macrocarpon HOM05D002011 ORTHO05D001948 9.5e-07 58.2 89 42.7
Glyma.04G063900 Glycine max HOM05D002011 ORTHO05D001948 1.2e-06 57.8 176 31.8
Lj1g0007627 Lotus japonicus HOM05D002011 ORTHO05D001948 1.2e-06 57.8 181 30.4
PGSC0003DMG400014198 Solanum tuberosum HOM05D002011 ORTHO05D001948 1.2e-06 57.8 208 30.3
C07p59060 Brassica napus HOM05D002011 ORTHO05D001948 1.6e-06 57.4 230 34.8
unitig_0.g358 Utricularia gibba HOM05D002011 ORTHO05D001948 1.6e-06 57.4 223 27.8
Actinidia25442 Actinidia chinensis HOM05D002011 ORTHO05D001948 2.1e-06 57.0 158 33.5
THA.LOC104803849 Tarenaya hassleriana HOM05D002011 ORTHO05D001948 2.1e-06 57.0 245 27.3
TWI32G0803 Tripterygium wilfordii HOM05D002011 ORTHO05D001948 2.1e-06 57.0 205 29.8
VMungo1309G3164 Vigna mungo HOM05D002011 ORTHO05D001948 2.1e-06 57.0 177 28.8
CARHR073910 Cardamine hirsuta HOM05D002011 ORTHO05D001948 2.8e-06 56.6 208 28.8
AUR62031573 Chenopodium quinoa HOM05D002011 ORTHO05D001948 2.8e-06 56.6 191 33.5
RcHm_v2.0_Chr2g0133521 Rosa chinensis HOM05D002011 ORTHO05D001948 2.8e-06 56.6 179 37.4
Actinidia08950 Actinidia chinensis HOM05D002011 ORTHO05D001948 3.6e-06 56.2 173 31.2
Haze_21454 Corylus avellana HOM05D002011 ORTHO05D001948 3.6e-06 56.2 57 56.1
FvH4_2g28270 Fragaria vesca HOM05D002011 ORTHO05D001948 3.6e-06 56.2 176 30.7
Lalb_Chr24g0395351 Lupinus albus HOM05D002011 ORTHO05D001948 3.6e-06 56.2 73 52.1
Rhsim02G0206600 Rhododendron simsii HOM05D002011 ORTHO05D001948 3.6e-06 56.2 249 28.1
A03p61210 Brassica napus HOM05D002011 ORTHO05D001948 4.7e-06 55.8 236 28.8
BraA01t00593Z Brassica rapa HOM05D002011 ORTHO05D001948 4.7e-06 55.8 232 27.6
CSS0039956 Camellia sinensis var. sinensis HOM05D002011 ORTHO05D001948 4.7e-06 55.8 190 31.6
FAN15G2620 Fragaria x ananassa HOM05D002011 ORTHO05D001948 4.7e-06 55.8 182 29.7
Gohir.A06G183800 Gossypium hirsutum HOM05D002011 ORTHO05D001948 4.7e-06 55.8 224 30.8
Sed0017330 Sechium edule HOM05D002011 ORTHO05D001948 4.7e-06 55.8 171 31.6
vmacro11223 Vaccinium macrocarpon HOM05D002011 ORTHO05D001948 4.7e-06 55.8 149 29.5
Atru.chr7.2505 Acer truncatum HOM05D002011 ORTHO05D001948 6.1e-06 55.5 190 30.5
AT1G80610 Arabidopsis thaliana HOM05D002011 ORTHO05D001948 6.1e-06 55.5 209 32.5
Cpa.g.sc127.1 Carica papaya HOM05D002011 ORTHO05D001948 6.1e-06 55.5 68 51.5
CsaV3_2G032320 Cucumis sativus L. HOM05D002011 ORTHO05D001948 6.1e-06 55.5 174 33.9
MBI14_g15651_MAGBIO Magnolia biondii HOM05D002011 ORTHO05D001948 6.1e-06 55.5 116 34.5
BraA08t33793Z Brassica rapa HOM05D002011 ORTHO05D001948 8.0e-06 55.1 236 28.4
Hund19962 Selenicereus undatus HOM05D002011 ORTHO05D001948 8.0e-06 55.1 154 31.8


User provided reference genes

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