Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G3605 Erigeron canadensis HOM05D004571 ORTHO05D005334 2.4e-40 168.3 81 100.0
HanXRQChr02g0036591 Helianthus annuus HOM05D004571 ORTHO05D005334 3.1e-32 141.4 92 78.3
Oeu044957.1 Olea europaea HOM05D004571 ORTHO05D005334 2.5e-29 131.7 77 77.9
C06p46340 Brassica napus HOM05D004571 ORTHO05D005334 1.2e-28 129.4 78 73.1
BolC6t39679H Brassica oleracea HOM05D004571 ORTHO05D005334 1.2e-28 129.4 78 73.1
AUR62004601 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.2e-28 129.4 78 78.2
AUR62023543 Chenopodium quinoa HOM05D004571 ORTHO05D005334 1.2e-28 129.4 78 78.2
CiPaw.07G235800 Carya illinoinensis HOM05D004571 ORTHO05D005334 1.6e-28 129.0 79 74.7
Rhsim11G0053000 Rhododendron simsii HOM05D004571 ORTHO05D005334 1.6e-28 129.0 77 75.3
AT1G72170 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 2.8e-28 128.3 76 75.0
Dinv41758 Davidia involucrata HOM05D004571 ORTHO05D005334 2.8e-28 128.3 79 75.9
A07p38280 Brassica napus HOM05D004571 ORTHO05D005334 3.6e-28 127.9 76 73.7
CARHR065020 Cardamine hirsuta HOM05D004571 ORTHO05D005334 3.6e-28 127.9 76 72.4
DCAR_014081 Daucus carota HOM05D004571 ORTHO05D005334 3.6e-28 127.9 79 75.9
HanXRQChr04g0101791 Helianthus annuus HOM05D004571 ORTHO05D005334 3.6e-28 127.9 73 78.1
BcaB03g14960 Brassica carinata HOM05D004571 ORTHO05D005334 4.7e-28 127.5 76 73.7
Lsat_1_v5_gn_1_25881 Lactuca sativa HOM05D004571 ORTHO05D005334 4.7e-28 127.5 75 80.0
Migut.C01321 Erythranthe guttata HOM05D004571 ORTHO05D005334 6.1e-28 127.1 76 76.3
BraA07t31392Z Brassica rapa HOM05D004571 ORTHO05D005334 8.0e-28 126.7 76 72.4
TWI14G1164 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 8.0e-28 126.7 78 73.1
Actinidia29414 Actinidia chinensis HOM05D004571 ORTHO05D005334 1.0e-27 126.3 79 77.2
Aa31LG4G8400 Aethionema arabicum HOM05D004571 ORTHO05D005334 1.8e-27 125.6 76 71.1
Medtr3g005050 Medicago truncatula HOM05D004571 ORTHO05D005334 2.3e-27 125.2 80 73.8
Sp5g27250 Schrenkiella parvula HOM05D004571 ORTHO05D005334 2.3e-27 125.2 76 72.4
Ca_13497_v3 Cicer arietinum L. HOM05D004571 ORTHO05D005334 3.0e-27 124.8 79 72.2
Haze_21312 Corylus avellana HOM05D004571 ORTHO05D005334 3.0e-27 124.8 79 72.2
Carub.0002s1897 Capsella rubella HOM05D004571 ORTHO05D005334 5.2e-27 124.0 76 71.1
AL2G31830 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 6.8e-27 123.6 76 71.1
A07p30330 Brassica napus HOM05D004571 ORTHO05D005334 8.9e-27 123.2 76 71.1
BraA07t30670Z Brassica rapa HOM05D004571 ORTHO05D005334 8.9e-27 123.2 76 71.1
Hund27115 Selenicereus undatus HOM05D004571 ORTHO05D005334 8.9e-27 123.2 80 72.5
EL10Ac1g00135 Beta vulgaris HOM05D004571 ORTHO05D005334 1.2e-26 122.9 78 73.1
TPR.G25514 Trifolium pratense HOM05D004571 ORTHO05D005334 1.2e-26 122.9 79 72.2
THA.LOC104800135 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.5e-26 122.5 76 69.7
MELO3C022229.2 Cucumis melo HOM05D004571 ORTHO05D005334 2.0e-26 122.1 79 70.9
TAR381G0940 Trochodendron aralioides HOM05D004571 ORTHO05D005334 2.0e-26 122.1 74 74.3
Ah.05g178570 Amaranthus hybridus HOM05D004571 ORTHO05D005334 2.6e-26 121.7 76 73.7
Cpa.g.sc66.1 Carica papaya HOM05D004571 ORTHO05D005334 2.6e-26 121.7 75 70.7
CiPaw.08G002900 Carya illinoinensis HOM05D004571 ORTHO05D005334 2.6e-26 121.7 79 70.9
COL.COLO4_24652 Corchorus olitorius HOM05D004571 ORTHO05D005334 2.6e-26 121.7 79 68.4
Hma1.2p1_0374F.1_g138460 Hydrangea macrophylla HOM05D004571 ORTHO05D005334 2.6e-26 121.7 76 72.4
MD08G1217900 Malus domestica HOM05D004571 ORTHO05D005334 2.6e-26 121.7 79 68.4
GSVIVG01026083001 Vitis vinifera HOM05D004571 ORTHO05D005334 2.6e-26 121.7 73 76.7
BolC6t38614H Brassica oleracea HOM05D004571 ORTHO05D005334 3.4e-26 121.3 76 69.7
Lj3g0024961 Lotus japonicus HOM05D004571 ORTHO05D005334 3.4e-26 121.3 79 70.9
Prupe.1G555400 Prunus persica HOM05D004571 ORTHO05D005334 3.4e-26 121.3 79 67.1
CANSAT25G3741 Cannabis sativa HOM05D004571 ORTHO05D005334 4.4e-26 120.9 79 68.4
CsaV3_5G040560 Cucumis sativus L. HOM05D004571 ORTHO05D005334 4.4e-26 120.9 79 69.6
Glyma.04G256400 Glycine max HOM05D004571 ORTHO05D005334 4.4e-26 120.9 76 69.7
MD15G1405800 Malus domestica HOM05D004571 ORTHO05D005334 4.4e-26 120.9 79 69.6
Phvul.005G000100 Phaseolus vulgaris HOM05D004571 ORTHO05D005334 4.4e-26 120.9 76 72.4
Potri.013G105766 Populus trichocarpa HOM05D004571 ORTHO05D005334 4.4e-26 120.9 67 83.6
VMungo1080G1505 Vigna mungo HOM05D004571 ORTHO05D005334 4.4e-26 120.9 72 75.0
CSS0010340 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 5.7e-26 120.6 74 73.0
CDE02G1838 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 7.5e-26 120.2 73 74.0
Gohir.A13G119100 Gossypium hirsutum HOM05D004571 ORTHO05D005334 7.5e-26 120.2 73 72.6
Gorai.013G137900 Gossypium raimondii HOM05D004571 ORTHO05D005334 7.5e-26 120.2 73 72.6
Sc23g0001520 Simmondsia chinensis HOM05D004571 ORTHO05D005334 7.5e-26 120.2 82 67.1
ClCG08G000160 Citrullus lanatus HOM05D004571 ORTHO05D005334 9.8e-26 119.8 77 70.1
PGR042G2098 Punica granatum HOM05D004571 ORTHO05D005334 9.8e-26 119.8 75 73.3
C06p35100 Brassica napus HOM05D004571 ORTHO05D005334 1.3e-25 119.4 76 69.7
Nn1g08340 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.3e-25 119.4 79 69.6
PSO017G1736 Papaver somniferum HOM05D004571 ORTHO05D005334 1.3e-25 119.4 79 68.4
PSO170G5138 Papaver somniferum HOM05D004571 ORTHO05D005334 1.3e-25 119.4 79 68.4
SalBow7G4145 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.3e-25 119.4 79 67.1
CDE08G1034 Ceratophyllum demersum HOM05D004571 ORTHO05D005334 1.7e-25 119.0 73 72.6
Ciclev10002721m.g Citrus clementina HOM05D004571 ORTHO05D005334 1.7e-25 119.0 76 68.4
ECA246G2468 Erigeron canadensis HOM05D004571 ORTHO05D005334 1.7e-25 119.0 75 74.7
Glyma.06G325200 Glycine max HOM05D004571 ORTHO05D005334 1.7e-25 119.0 76 68.4
Gohir.D13G122900 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.7e-25 119.0 73 71.2
Actinidia03516 Actinidia chinensis HOM05D004571 ORTHO05D005334 2.2e-25 118.6 79 72.2
Thecc.08G192400 Theobroma cacao HOM05D004571 ORTHO05D005334 2.9e-25 118.2 78 67.9
Gohir.D13G123000 Gossypium hirsutum HOM05D004571 ORTHO05D005334 6.4e-25 117.1 73 69.9
SGA_v2.0_scaffold24G10606 Striga asiatica HOM05D004571 ORTHO05D005334 6.4e-25 117.1 72 72.2
Psat1g003360 Pisum sativum HOM05D004571 ORTHO05D005334 8.3e-25 116.7 79 69.6
THA.LOC104809727 Tarenaya hassleriana HOM05D004571 ORTHO05D005334 1.1e-24 116.3 83 63.9
Nn5g27495 Nelumbo nucifera HOM05D004571 ORTHO05D005334 1.4e-24 115.9 69 73.9
TAR628G0297 Trochodendron aralioides HOM05D004571 ORTHO05D005334 1.4e-24 115.9 69 72.5
Gohir.A13G119200 Gossypium hirsutum HOM05D004571 ORTHO05D005334 1.8e-24 115.5 73 69.9
HanXRQChr13g0402341 Helianthus annuus HOM05D004571 ORTHO05D005334 3.2e-24 114.8 78 70.5
Sed0021715 Sechium edule HOM05D004571 ORTHO05D005334 3.2e-24 114.8 79 70.9
Sabra13G0091300 Salix brachista HOM05D004571 ORTHO05D005334 4.1e-24 114.4 67 80.6
DCAR_017443 Daucus carota HOM05D004571 ORTHO05D005334 5.4e-24 114.0 79 69.6
Nitab4.5_0001463g0030 Nicotiana tabacum HOM05D004571 ORTHO05D005334 5.4e-24 114.0 97 56.7
Nitab4.5_0005616g0050 Nicotiana tabacum HOM05D004571 ORTHO05D005334 5.4e-24 114.0 97 56.7
SalBow5G3518 Salvia bowleyana HOM05D002016 ORTHO05D002251 5.4e-24 114.0 79 64.6
unitig_26.g9866 Utricularia gibba HOM05D004571 ORTHO05D005334 5.4e-24 114.0 77 67.5
Atru.chr13.2366 Acer truncatum HOM05D004571 ORTHO05D005334 9.2e-24 113.2 81 63.0
AL1G36060 Arabidopsis lyrata HOM05D004571 ORTHO05D005334 1.2e-23 112.8 73 71.2
FAN04G0250 Fragaria x ananassa HOM05D004571 ORTHO05D005334 1.2e-23 112.8 74 66.2
Potri.019G079101 Populus trichocarpa HOM05D004571 ORTHO05D005334 1.2e-23 112.8 67 76.1
RcHm_v2.0_Chr7g0227581 Rosa chinensis HOM05D004571 ORTHO05D005334 1.2e-23 112.8 78 61.5
AT1G22520 Arabidopsis thaliana HOM05D004571 ORTHO05D005334 1.6e-23 112.5 73 71.2
CANSAT56G3739 Cannabis sativa HOM05D004571 ORTHO05D005334 2.0e-23 112.1 79 63.3
Thhalv10019513m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 2.0e-23 112.1 76 67.1
PGSC0003DMG400025645 Solanum tuberosum HOM05D004571 ORTHO05D005334 2.0e-23 112.1 74 70.3
Peaxi162Scf00076g00210 Petunia axillaris HOM05D004571 ORTHO05D005334 2.7e-23 111.7 94 60.6
QL02p026432 Quercus lobata HOM05D004571 ORTHO05D005334 2.7e-23 111.7 69 72.5
BcaB03g14198 Brassica carinata HOM05D004571 ORTHO05D005334 3.5e-23 111.3 71 71.8
FAN13G1323 Fragaria x ananassa HOM05D004571 ORTHO05D005334 3.5e-23 111.3 74 64.9
FAN18G0720 Fragaria x ananassa HOM05D004571 ORTHO05D005334 4.6e-23 110.9 74 64.9
Sp1g20030 Schrenkiella parvula HOM05D004571 ORTHO05D005334 4.6e-23 110.9 71 73.2
SEGI_09168 Sequoiadendron giganteum HOM05D004571 ORTHO05D005334 4.6e-23 110.9 78 64.1
FvH4_5g31700 Fragaria vesca HOM05D004571 ORTHO05D005334 5.9e-23 110.5 74 64.9
Aqoxy5G02645 Aquilegia oxysepala HOM05D004571 ORTHO05D005334 7.8e-23 110.2 84 61.9
Sabra19G0089800 Salix brachista HOM05D004571 ORTHO05D005334 7.8e-23 110.2 67 74.6
Carub.0001s2205 Capsella rubella HOM05D004571 ORTHO05D005334 1.0e-22 109.8 63 77.8
Manes.02G223200 Manihot esculenta HOM05D004571 ORTHO05D005334 1.0e-22 109.8 63 77.8
Solyc11g027870.2 Solanum lycopersicum HOM05D004571 ORTHO05D005334 1.0e-22 109.8 74 68.9
Sopen11g022630 Solanum pennellii HOM05D004571 ORTHO05D005334 1.0e-22 109.8 74 68.9
Aa31LG7G6430 Aethionema arabicum HOM05D004571 ORTHO05D005334 3.9e-22 107.8 65 73.8
ATR1136G048 Amborella trichopoda HOM05D004571 ORTHO05D005334 3.9e-22 107.8 79 63.3
Zm00001eb063990 Zea mays HOM05D004571 ORTHO05D005334 6.6e-22 107.1 70 68.6
BcaC07g39167 Brassica carinata HOM05D004571 ORTHO05D005334 8.6e-22 106.7 71 67.6
C08p21600 Brassica napus HOM05D004571 ORTHO05D005334 8.6e-22 106.7 71 67.6
CARHR022880 Cardamine hirsuta HOM05D004571 ORTHO05D005334 8.6e-22 106.7 65 73.8
Duzib116G0804 Durio zibethinus HOM05D004571 ORTHO05D005334 8.6e-22 106.7 92 56.5
Thhalv10009192m.g Eutrema salsugineum HOM05D004571 ORTHO05D005334 8.6e-22 106.7 71 67.6
A08p28490 Brassica napus HOM05D004571 ORTHO05D005334 2.5e-21 105.1 63 74.6
BraA08t34777Z Brassica rapa HOM05D004571 ORTHO05D005334 2.5e-21 105.1 63 74.6
BcaB03g11911 Brassica carinata HOM05D004571 ORTHO05D005334 3.3e-21 104.8 63 74.6
BolC8t49798H Brassica oleracea HOM05D004571 ORTHO05D005334 3.3e-21 104.8 63 73.0
Os03g0840900 Oryza sativa ssp. japonica HOM05D004571 ORTHO05D005334 4.3e-21 104.4 75 61.3
MBI16_g31756_MAGBIO Magnolia biondii HOM05D004571 ORTHO05D005334 5.6e-21 104.0 67 71.6
Zm00001eb211000 Zea mays HOM05D004571 ORTHO05D005334 1.6e-20 102.4 69 66.7
MD17G1233400 Malus domestica HOM05D004571 ORTHO05D005334 2.1e-20 102.1 79 60.8
arahy.Tifrunner.gnm1.ann1.ET922W Arachis hypogaea HOM05D004571 ORTHO05D005334 3.6e-20 101.3 67 67.2
arahy.Tifrunner.gnm1.ann1.Q0KDHL Arachis hypogaea HOM05D008831 ORTHO05D005334 3.6e-20 101.3 67 67.2
CANSAT80G2522 Cannabis sativa HOM05D004571 ORTHO05D005334 4.7e-20 100.9 77 63.6
HPP92_012688 Vanilla planifolia HOM05D004571 ORTHO05D005334 4.0e-19 97.8 66 65.2
HPP92_012699 Vanilla planifolia HOM05D004571 ORTHO05D005334 1.2e-18 96.3 66 63.6
HPP92_016944 Vanilla planifolia HOM05D004571 ORTHO05D005334 5.8e-18 94.0 76 56.6
A07p14330 Brassica napus HOM05D004571 ORTHO05D005334 1.7e-17 92.4 71 59.2
BraA07t29189Z Brassica rapa HOM05D004571 ORTHO05D005334 1.7e-17 92.4 71 59.2
Cc10_g09660 Coffea canephora HOM05D004571 ORTHO05D005334 2.2e-17 92.0 70 55.7
SalBow8G4375 Salvia bowleyana HOM05D004571 ORTHO05D005334 3.7e-17 91.3 56 73.2
SalBow7G3147 Salvia bowleyana HOM05D004571 ORTHO05D005334 6.4e-17 90.5 56 73.2
SalBow1G4736 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.1e-16 89.7 56 71.4
AagrBONN_evm.TU.Sc2ySwM_344.525 Anthoceros agrestis HOM05D004571 ORTHO05D005334 1.9e-16 89.0 67 61.2
CSS0023243 Camellia sinensis var. sinensis HOM05D004571 ORTHO05D005334 2.4e-16 88.6 61 67.2
PSO170G6605 Papaver somniferum HOM05D004571 ORTHO05D005334 4.1e-16 87.8 58 67.2
Peaxi162Scf00688g00440 Petunia axillaris HOM05D004571 ORTHO05D005334 5.4e-16 87.4 60 61.7
Pp3c6_25110 Physcomitrium patens HOM05D004571 ORTHO05D005334 7.0e-16 87.0 67 59.7
CBR_g28554 Chara braunii HOM05D004571 ORTHO05D005334 2.0e-15 85.5 73 58.9
Pp3c5_3370 Physcomitrium patens HOM05D004571 ORTHO05D005334 3.5e-15 84.7 64 59.4
Pp3c16_13970 Physcomitrium patens HOM05D004571 ORTHO05D005334 4.6e-15 84.3 68 57.4
SMO170G0007 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 7.8e-15 83.6 55 65.5
Mapoly0097s0059 Marchantia polymorpha HOM05D004571 ORTHO05D005334 1.0e-14 83.2 61 60.7
AagrBONN_evm.TU.Sc2ySwM_117.1227 Anthoceros agrestis HOM05D004571 ORTHO05D005334 8.6e-14 80.1 63 54.0
C07p21100 Brassica napus HOM05D004571 ORTHO05D005334 1.5e-13 79.3 115 40.0
SalBow1G5773 Salvia bowleyana HOM05D004571 ORTHO05D005334 1.5e-13 79.3 50 70.0
SMO356G0601 Selaginella moellendorffii HOM05D004571 ORTHO05D005334 1.3e-09 66.2 60 45.0
Gorai.013G138000 Gossypium raimondii HOM05D004571 ORTHO05D005334 2.2e-09 65.5 44 63.6
PRCOL_00006286 Prasinoderma coloniale HOM05D004571 ORTHO05D005334 2.4e-08 62.0 65 43.1
TWI23G0269 Tripterygium wilfordii HOM05D004571 ORTHO05D005334 7.8e-07 57.0 34 70.6
BcaC06g34972 Brassica carinata HOM05D004571 ORTHO05D005334 3.9e-06 54.7 29 79.3


User provided reference genes

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