Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G3417 Erigeron canadensis HOM05D006995 ORTHO05D008870 8.1e-24 113.6 93 100.0
CSS0043708 Camellia sinensis var. sinensis HOM05D006995 ORTHO05D008870 4.4e-14 81.3 93 50.5
MSTRG.11491 Avicennia marina HOM05D006995 ORTHO05D008870 7.6e-14 80.5 93 59.1
Peaxi162Scf00089g01427 Petunia axillaris HOM05D006995 ORTHO05D008870 1.3e-13 79.7 93 47.3
Migut.O00152 Erythranthe guttata HOM05D006995 ORTHO05D008870 2.9e-13 78.6 93 48.4
Dinv20602 Davidia involucrata HOM05D006995 ORTHO05D008870 6.4e-13 77.4 93 47.3
MSTRG.23164 Avicennia marina HOM05D006995 ORTHO05D008870 8.4e-13 77.0 93 57.0
Hma1.2p1_0046F.1_g027080 Hydrangea macrophylla HOM05D006995 ORTHO05D008870 1.1e-12 76.6 93 57.0
Oeu008873.1 Olea europaea HOM05D006995 ORTHO05D008870 1.4e-12 76.3 93 58.1
Cc04_g11640 Coffea canephora HOM05D006995 ORTHO05D008870 1.9e-12 75.9 93 52.7
Psat5g116320 Pisum sativum HOM05D006995 ORTHO05D008870 1.9e-12 75.9 93 53.8
Sp2g26260 Schrenkiella parvula HOM05D006995 ORTHO05D008870 3.2e-12 75.1 93 46.2
FAN18G0637 Fragaria x ananassa HOM05D006995 ORTHO05D008870 5.4e-12 74.3 93 52.7
unitig_26.g8807 Utricularia gibba HOM05D006995 ORTHO05D008870 5.4e-12 74.3 91 46.2
Aa31LG1G18840 Aethionema arabicum HOM05D006995 ORTHO05D008870 7.1e-12 73.9 93 45.2
Prupe.5G166100 Prunus persica HOM05D006995 ORTHO05D008870 9.3e-12 73.6 93 49.5
PGR044G0957 Punica granatum HOM05D006995 ORTHO05D008870 1.2e-11 73.2 91 51.6
FvH4_5g06250 Fragaria vesca HOM05D006995 ORTHO05D008870 1.6e-11 72.8 93 51.6
FAN08G0020 Fragaria x ananassa HOM05D006995 ORTHO05D008870 1.6e-11 72.8 93 51.6
MD14G1172000 Malus domestica HOM05D006995 ORTHO05D008870 1.6e-11 72.8 93 53.8
RcHm_v2.0_Chr7g0192611 Rosa chinensis HOM05D006995 ORTHO05D008870 1.6e-11 72.8 93 51.6
VMungo1309G2685 Vigna mungo HOM05D006995 ORTHO05D008870 1.6e-11 72.8 91 52.7
TAR629G0625 Trochodendron aralioides HOM05D006995 ORTHO05D008870 3.5e-11 71.6 93 53.8
Potri.012G085100 Populus trichocarpa HOM05D006995 ORTHO05D008870 4.6e-11 71.2 93 52.7
Manes.14G061000 Manihot esculenta HOM05D006995 ORTHO05D008870 6.0e-11 70.9 93 54.8
Nn4g22611 Nelumbo nucifera HOM05D006995 ORTHO05D008870 6.0e-11 70.9 93 48.4
SalBow5G1368 Salvia bowleyana HOM05D006995 ORTHO05D008870 6.0e-11 70.9 93 54.8
SalBow5G3606 Salvia bowleyana HOM05D006995 ORTHO05D008870 6.0e-11 70.9 93 54.8
Lj9C443G5 Lonicera japonica HOM05D006995 ORTHO05D008870 7.8e-11 70.5 93 51.6
Phvul.009G174500 Phaseolus vulgaris HOM05D006995 ORTHO05D008870 7.8e-11 70.5 93 54.8
Lsat_1_v5_gn_5_14241 Lactuca sativa HOM05D006995 ORTHO05D008870 1.0e-10 70.1 91 51.6
BraA06t25934Z Brassica rapa HOM05D006995 ORTHO05D008870 1.3e-10 69.7 95 56.8
Eucgr.K02801 Eucalyptus grandis HOM05D006995 ORTHO05D008870 1.7e-10 69.3 48 70.8
AL8G40200 Arabidopsis lyrata HOM05D006995 ORTHO05D008870 3.0e-10 68.6 93 49.5
BcaB02g09725 Brassica carinata HOM05D006995 ORTHO05D008870 3.0e-10 68.6 94 55.3
TWI23G0026 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 3.0e-10 68.6 93 52.7
A06p29860 Brassica napus HOM05D006995 ORTHO05D008870 6.6e-10 67.4 95 55.8
AT5G63135 Arabidopsis thaliana HOM05D006995 ORTHO05D008870 1.1e-09 66.6 93 51.6
Glyma.06G177900 Glycine max HOM05D006995 ORTHO05D008870 1.1e-09 66.6 48 68.8
TWI39G0505 Tripterygium wilfordii HOM05D006995 ORTHO05D008870 1.1e-09 66.6 93 54.8
Lalb_Chr08g0236711 Lupinus albus HOM05D006995 ORTHO05D008870 1.5e-09 66.2 48 68.8
Actinidia24594 Actinidia chinensis HOM05D006995 ORTHO05D008870 1.9e-09 65.9 93 46.2
Ca_16134_v3 Cicer arietinum L. HOM05D006995 ORTHO05D008870 1.9e-09 65.9 93 52.7
ClCG01G013460 Citrullus lanatus HOM05D006995 ORTHO05D008870 1.9e-09 65.9 46 71.7
MELO3C002295.2 Cucumis melo HOM05D006995 ORTHO05D008870 1.9e-09 65.9 46 71.7
Glyma.04G187800 Glycine max HOM05D006995 ORTHO05D008870 1.9e-09 65.9 93 49.5
Nitab4.5_0001793g0100 Nicotiana tabacum HOM05D006995 ORTHO05D008870 2.5e-09 65.5 93 51.6
Nitab4.5_0003703g0070 Nicotiana tabacum HOM05D006995 ORTHO05D008870 2.5e-09 65.5 93 51.6
BolC3t18607H Brassica oleracea HOM05D006995 ORTHO05D008870 3.3e-09 65.1 95 54.7
BraA09t36465Z Brassica rapa HOM05D006995 ORTHO05D008870 3.3e-09 65.1 93 54.8
Ca_22795_v3 Cicer arietinum L. HOM05D001863 ORTHO05D001962 4.3e-09 64.7 80 47.5
CsaV3_1G008810 Cucumis sativus L. HOM05D006995 ORTHO05D008870 4.3e-09 64.7 46 69.6
Duzib205G0595 Durio zibethinus HOM05D006995 ORTHO05D008870 4.3e-09 64.7 47 68.1
HanXRQChr04g0101331 Helianthus annuus HOM05D006995 ORTHO05D008870 4.3e-09 64.7 93 53.8
Solyc03g112290.2 Solanum lycopersicum HOM05D006995 ORTHO05D008870 4.3e-09 64.7 48 64.6
Sopen03g031390 Solanum pennellii HOM05D006995 ORTHO05D008870 4.3e-09 64.7 48 64.6
arahy.Tifrunner.gnm1.ann1.W5ECLN Arachis hypogaea HOM05D006995 ORTHO05D008870 7.3e-09 63.9 93 49.5
arahy.Tifrunner.gnm1.ann1.X0DT51 Arachis hypogaea HOM05D006995 ORTHO05D008870 7.3e-09 63.9 93 49.5
Lj1g0014247 Lotus japonicus HOM05D006995 ORTHO05D008870 7.3e-09 63.9 93 48.4
CAN.G338.27 Capsicum annuum HOM05D006995 ORTHO05D008870 9.6e-09 63.5 48 64.6
Gohir.A12G199700 Gossypium hirsutum HOM05D006995 ORTHO05D008870 9.6e-09 63.5 47 68.1
Gorai.008G217400 Gossypium raimondii HOM05D006995 ORTHO05D008870 9.6e-09 63.5 47 68.1
PGSC0003DMG400018185 Solanum tuberosum HOM05D006995 ORTHO05D008870 9.6e-09 63.5 48 62.5
THA.LOC104798964 Tarenaya hassleriana HOM05D006995 ORTHO05D008870 9.6e-09 63.5 93 47.3
ATR0824G277 Amborella trichopoda HOM05D006995 ORTHO05D008870 1.3e-08 63.2 99 44.4
Cpa.g.sc159.33 Carica papaya HOM05D006995 ORTHO05D008870 1.6e-08 62.8 45 71.1
CiPaw.11G020900 Carya illinoinensis HOM05D006995 ORTHO05D008870 1.6e-08 62.8 46 67.4
Sed0018383 Sechium edule HOM05D006995 ORTHO05D008870 1.6e-08 62.8 46 69.6
A09p08140 Brassica napus HOM05D006995 ORTHO05D008870 2.1e-08 62.4 95 55.8
CANSAT80G0726 Cannabis sativa HOM05D006995 ORTHO05D008870 2.1e-08 62.4 93 52.7
CARHR276970 Cardamine hirsuta HOM05D006995 ORTHO05D008870 2.1e-08 62.4 93 46.2
Thecc.03G024900 Theobroma cacao HOM05D006995 ORTHO05D008870 2.8e-08 62.0 47 66.0
Aqoxy5G03762 Aquilegia oxysepala HOM05D006995 ORTHO05D008870 3.6e-08 61.6 93 45.2
Carub.0008s2389 Capsella rubella HOM05D006995 ORTHO05D008870 4.8e-08 61.2 93 50.5
Thhalv10023776m.g Eutrema salsugineum HOM05D006995 ORTHO05D008870 4.8e-08 61.2 93 44.1
QL10p006993 Quercus lobata HOM05D006995 ORTHO05D008870 6.2e-08 60.8 45 66.7
BcaC01g02557 Brassica carinata HOM05D006995 ORTHO05D008870 8.1e-08 60.5 102 52.0
C03p63500 Brassica napus HOM05D006995 ORTHO05D008870 8.1e-08 60.5 102 52.0
SGA_v2.0_scaffold90G27846 Striga asiatica HOM05D006995 ORTHO05D008870 8.1e-08 60.5 47 61.7
Medtr3g077017 Medicago truncatula HOM05D006995 ORTHO05D008870 1.1e-07 60.1 54 63.0
Atru.chr9.2568 Acer truncatum HOM05D006995 ORTHO05D008870 5.3e-07 57.8 46 63.0
ATR0743G118 Amborella trichopoda HOM05D006995 ORTHO05D008870 6.9e-07 57.4 99 42.4
COL.COLO4_05561 Corchorus olitorius HOM05D006995 ORTHO05D008870 1.2e-06 56.6 41 68.3
MELO3C035410.2 Cucumis melo HOM05D006995 ORTHO05D167536 1.2e-06 56.6 43 65.1
Gohir.D12G202400 Gossypium hirsutum HOM05D006995 ORTHO05D008870 2.0e-06 55.8 45 68.9
Sabra12G0061300 Salix brachista HOM05D006995 ORTHO05D008870 2.0e-06 55.8 41 68.3
BcaC04g23358 Brassica carinata HOM05D006995 ORTHO05D008870 2.6e-06 55.5 48 56.2
C09p09200 Brassica napus HOM05D006995 ORTHO05D008870 2.6e-06 55.5 48 56.2
BolC9t53833H Brassica oleracea HOM05D006995 ORTHO05D008870 2.6e-06 55.5 48 56.2
vmacro16643 Vaccinium macrocarpon HOM05D006995 ORTHO05D008870 2.6e-06 55.5 42 61.9


User provided reference genes

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