Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G3396 Erigeron canadensis HOM05D003681 ORTHO05D004703 1.3e-32 142.5 72 100.0
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 5.3e-31 137.1 72 94.4
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 1.1e-28 129.4 72 87.5
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 1.4e-23 112.5 73 80.8
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 5.0e-21 104.0 71 71.8
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 2.5e-20 101.7 71 69.0
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 3.2e-20 101.3 69 73.9
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 7.1e-20 100.1 69 71.0
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 7.1e-20 100.1 71 67.6
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 1.2e-19 99.4 71 66.2
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 1.2e-19 99.4 71 70.4
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.2e-19 99.4 71 69.0
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.1e-19 98.6 69 69.6
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 2.1e-19 98.6 70 68.6
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 2.1e-19 98.6 71 67.6
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 2.7e-19 98.2 70 70.0
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 3.5e-19 97.8 69 68.1
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 3.5e-19 97.8 71 69.0
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 4.6e-19 97.4 71 67.6
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 6.1e-19 97.1 69 68.1
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 7.9e-19 96.7 71 67.6
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 1.3e-18 95.9 71 67.6
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 1.3e-18 95.9 71 67.6
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.8e-18 95.5 71 67.6
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.8e-18 95.5 71 67.6
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.8e-18 95.5 71 67.6
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 2.3e-18 95.1 71 64.8
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 2.3e-18 95.1 71 66.2
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 2.3e-18 95.1 71 66.2
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 3.0e-18 94.7 71 67.6
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 3.0e-18 94.7 71 66.2
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 3.0e-18 94.7 71 69.0
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 5.1e-18 94.0 71 69.0
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 6.7e-18 93.6 71 64.8
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.1e-17 92.8 71 64.8
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 1.5e-17 92.4 71 63.4
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 1.5e-17 92.4 71 67.6
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 1.5e-17 92.4 71 67.6
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 2.5e-17 91.7 71 66.2
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 3.3e-17 91.3 70 65.7
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 3.3e-17 91.3 78 62.8
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.3e-17 91.3 71 66.2
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 3.3e-17 91.3 71 66.2
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 4.3e-17 90.9 78 62.8
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 5.7e-17 90.5 69 65.2
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 7.4e-17 90.1 71 64.8
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 9.7e-17 89.7 72 62.5
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 9.7e-17 89.7 71 63.4
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 9.7e-17 89.7 69 66.7
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 1.3e-16 89.4 71 63.4
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 1.3e-16 89.4 69 65.2
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 1.3e-16 89.4 70 64.3
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.6e-16 89.0 71 64.8
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 2.2e-16 88.6 69 65.2
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 2.8e-16 88.2 69 62.3
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 2.8e-16 88.2 71 63.4
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 3.7e-16 87.8 63 68.3
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 3.7e-16 87.8 71 59.2
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 3.7e-16 87.8 71 62.0
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 8.2e-16 86.7 70 62.9
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 1.1e-15 86.3 69 65.2
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 1.1e-15 86.3 63 66.7
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.1e-15 86.3 71 63.4
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 1.1e-15 86.3 71 59.2
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 1.4e-15 85.9 63 66.7
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 1.4e-15 85.9 69 65.2
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 1.4e-15 85.9 71 60.6
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 1.4e-15 85.9 71 60.6
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 1.8e-15 85.5 69 65.2
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 1.8e-15 85.5 69 65.2
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 1.8e-15 85.5 69 65.2
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 1.8e-15 85.5 69 65.2
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 1.8e-15 85.5 69 65.2
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 1.8e-15 85.5 69 65.2
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.4e-15 85.1 71 57.7
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 2.4e-15 85.1 69 63.8
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 2.4e-15 85.1 69 63.8
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 2.4e-15 85.1 71 60.6
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 2.4e-15 85.1 67 62.7
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 2.4e-15 85.1 63 66.7
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 3.1e-15 84.7 69 62.3
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 3.1e-15 84.7 71 59.2
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 3.1e-15 84.7 76 56.6
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 3.1e-15 84.7 72 58.3
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 4.1e-15 84.3 69 63.8
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 4.1e-15 84.3 71 57.7
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 6.9e-15 83.6 69 62.3
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 9.0e-15 83.2 70 60.0
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 1.2e-14 82.8 67 64.2
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 1.2e-14 82.8 67 64.2
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.2e-14 82.8 71 59.2
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 1.2e-14 82.8 70 61.4
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 1.5e-14 82.4 64 71.9
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 2.0e-14 82.0 71 57.7
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 2.0e-14 82.0 71 57.7
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 2.6e-14 81.6 71 59.2
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 3.4e-14 81.3 71 57.7
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 3.4e-14 81.3 71 57.7
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 3.4e-14 81.3 71 57.7
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 5.9e-14 80.5 67 62.7
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 7.7e-14 80.1 70 57.1
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 1.3e-13 79.3 65 61.5
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 1.3e-13 79.3 76 55.3
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 2.2e-13 78.6 58 63.8
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 2.9e-13 78.2 57 64.9
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 2.9e-13 78.2 57 63.2
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 2.9e-13 78.2 72 54.2
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 5.0e-13 77.4 57 61.4
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 6.5e-13 77.0 67 59.7
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 8.5e-13 76.6 55 67.3
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 1.4e-12 75.9 70 55.7
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 2.5e-12 75.1 65 61.5
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 3.2e-12 74.7 65 61.5
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 4.2e-12 74.3 87 48.3
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 9.4e-12 73.2 57 57.9
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 9.4e-12 73.2 57 57.9
DCAR_011288 Daucus carota HOM05D003681 ORTHO05D004703 2.7e-11 71.6 72 52.8
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 2.7e-11 71.6 71 54.9
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 2.7e-11 71.6 57 61.4
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 4.6e-11 70.9 79 51.9
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 1.4e-10 69.3 57 57.9
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 3.0e-10 68.2 61 55.7
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 5.1e-10 67.4 57 56.1
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 1.5e-09 65.9 64 54.7
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 2.5e-09 65.1 57 56.1
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 3.3e-09 64.7 55 56.4
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 4.3e-09 64.3 57 56.1
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 2.2e-08 62.0 71 47.9
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 6.3e-08 60.5 73 47.9
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 6.3e-08 60.5 55 56.4
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 6.3e-08 60.5 58 51.7
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 8.2e-08 60.1 49 63.3
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 1.4e-07 59.3 65 52.3
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 4.1e-07 57.8 60 53.3
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 7.7e-06 53.5 64 45.3


User provided reference genes

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