Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 5.8e-178 627.5 327 100.0
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 1.9e-96 356.7 225 80.9
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.1e-94 350.9 323 62.2
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 3.1e-94 349.4 219 82.6
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 4.0e-94 349.0 345 59.1
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 6.8e-94 348.2 326 61.0
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 8.9e-94 347.8 223 80.3
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 8.9e-94 347.8 243 74.5
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 1.5e-93 347.1 223 79.8
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 2.0e-93 346.7 223 80.3
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 2.0e-93 346.7 229 79.5
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 2.6e-93 346.3 223 79.8
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 4.4e-93 345.5 328 60.7
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 1.7e-92 343.6 224 77.2
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 8.4e-92 341.3 236 74.6
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 8.4e-92 341.3 221 79.6
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 1.1e-91 340.9 220 79.1
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 1.9e-91 340.1 325 60.3
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 3.2e-91 339.3 223 78.5
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 5.4e-91 338.6 236 74.2
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 5.4e-91 338.6 334 60.8
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 9.3e-91 337.8 240 72.1
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 1.2e-90 337.4 220 80.0
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 1.6e-90 337.0 221 79.6
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 2.7e-90 336.3 221 78.3
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 2.7e-90 336.3 220 79.5
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 3.5e-90 335.9 226 77.4
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 4.6e-90 335.5 223 78.0
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 6.0e-90 335.1 235 74.5
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 7.8e-90 334.7 214 80.4
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 7.8e-90 334.7 292 63.4
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 7.8e-90 334.7 220 77.3
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.7e-89 333.6 231 75.3
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 1.7e-89 333.6 221 77.8
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 2.3e-89 333.2 221 76.5
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 2.3e-89 333.2 272 66.5
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 3.0e-89 332.8 220 75.9
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 3.0e-89 332.8 231 76.6
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 3.9e-89 332.4 220 76.8
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.1e-89 332.0 226 76.1
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 5.1e-89 332.0 221 77.4
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 8.7e-89 331.3 220 76.8
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 8.7e-89 331.3 226 75.7
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 8.7e-89 331.3 228 73.2
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 1.1e-88 330.9 235 73.6
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 1.1e-88 330.9 236 72.9
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 1.1e-88 330.9 221 76.5
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.5e-88 330.5 245 70.6
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 1.5e-88 330.5 327 59.3
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 1.9e-88 330.1 232 72.8
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 2.5e-88 329.7 223 78.0
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 3.3e-88 329.3 219 76.3
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 4.3e-88 328.9 231 74.5
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 7.3e-88 328.2 220 75.5
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 9.6e-88 327.8 256 68.8
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 9.6e-88 327.8 220 75.5
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 9.6e-88 327.8 231 74.5
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 9.6e-88 327.8 221 75.1
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 1.6e-87 327.0 220 74.5
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 1.1e-86 324.3 220 74.5
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 1.1e-86 324.3 236 71.6
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 1.4e-86 323.9 221 76.5
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.4e-86 323.9 237 73.0
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 1.8e-86 323.6 223 74.9
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 2.4e-86 323.2 299 60.2
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 2.4e-86 323.2 220 74.5
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 3.1e-86 322.8 215 77.7
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 4.0e-86 322.4 267 66.7
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 5.3e-86 322.0 232 72.4
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 5.3e-86 322.0 223 73.5
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 6.9e-86 321.6 221 75.1
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 9.0e-86 321.2 243 69.1
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 9.0e-86 321.2 243 69.1
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 9.0e-86 321.2 256 67.6
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 9.0e-86 321.2 223 73.5
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.2e-85 320.9 231 73.6
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 1.2e-85 320.9 231 71.9
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 2.0e-85 320.1 236 71.6
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.6e-85 319.7 232 72.0
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 3.4e-85 319.3 221 74.7
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 3.4e-85 319.3 221 74.7
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 4.4e-85 318.9 232 71.1
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 4.4e-85 318.9 221 74.2
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 5.8e-85 318.5 221 74.2
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 7.6e-85 318.2 226 71.7
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 1.3e-84 317.4 220 73.6
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 1.3e-84 317.4 232 71.1
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 1.7e-84 317.0 241 69.7
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.7e-84 317.0 241 69.7
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 1.7e-84 317.0 233 71.7
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 2.2e-84 316.6 221 72.9
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 2.9e-84 316.2 234 71.4
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 2.9e-84 316.2 237 69.6
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 3.8e-84 315.8 237 69.6
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 3.8e-84 315.8 220 74.1
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 4.9e-84 315.5 219 75.3
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 6.4e-84 315.1 237 69.6
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 8.4e-84 314.7 214 76.6
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 1.4e-83 313.9 238 68.1
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 1.9e-83 313.5 233 69.5
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 1.9e-83 313.5 233 69.5
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 4.2e-83 312.4 223 71.3
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 5.4e-83 312.0 233 69.1
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 5.4e-83 312.0 233 69.1
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.2e-82 310.8 266 63.9
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 1.2e-82 310.8 220 72.3
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 6.0e-82 308.5 234 71.8
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.3e-81 307.4 218 72.5
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 2.3e-81 306.6 220 70.5
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 3.9e-81 305.8 218 71.6
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 3.3e-80 302.8 220 70.9
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 4.3e-80 302.4 229 68.1
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 5.6e-80 302.0 229 67.7
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 9.6e-80 301.2 285 60.0
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 5.3e-78 295.4 219 71.2
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 6.9e-78 295.0 233 66.1
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 2.6e-77 293.1 221 68.8
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.9e-76 289.7 226 66.4
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 7.1e-75 285.0 215 69.8
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 6.0e-74 282.0 220 66.4
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 2.3e-73 280.0 222 68.0
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 5.1e-73 278.9 177 80.8
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 1.1e-72 277.7 178 78.7
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 1.1e-72 277.7 233 63.5
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.2e-68 263.5 170 78.8
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.2e-66 257.7 219 63.9
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 6.0e-66 255.4 167 78.4
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.0e-65 254.6 191 70.2
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 7.4e-64 248.4 175 76.0
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.1e-62 243.0 207 65.2
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 4.0e-62 242.7 313 47.0
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 2.5e-59 233.4 279 54.1
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 2.7e-58 229.9 250 55.6
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.7e-58 229.9 191 66.0
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 3.5e-58 229.6 157 73.2
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 7.9e-58 228.4 268 49.3
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 7.9e-58 228.4 268 49.3
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.3e-57 226.9 174 69.0
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 7.4e-56 221.9 176 68.2
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.1e-54 218.0 185 61.1
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 5.3e-54 215.7 184 62.0
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 2.5e-51 206.8 182 58.2
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 3.2e-51 206.5 182 59.3
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 2.7e-50 203.4 202 54.5
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 3.0e-49 199.9 160 67.5
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 1.7e-44 184.1 154 63.6
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 2.2e-44 183.7 235 47.2
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 5.0e-28 129.4 242 33.9
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 5.0e-28 129.4 221 39.4
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 8.3e-23 112.1 68 76.5
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 5.4e-22 109.4 209 36.8
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 3.6e-18 96.7 210 31.4
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 7.5e-16 89.0 235 30.2
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.4e-14 84.7 200 32.0
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.9e-11 74.3 57 68.4
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 4.2e-11 73.2 42 78.6
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 8.0e-10 68.9 72 54.2
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 4.0e-09 66.6 41 70.7
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.3e-07 61.6 192 29.2
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 2.9e-07 60.5 182 29.1


User provided reference genes

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