Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 0.0e+00 1732.2 878 100.0
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 0.0e+00 1199.1 886 72.8
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 0.0e+00 1078.2 930 65.3
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.4e-295 1019.6 901 63.6
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 4.9e-272 941.4 887 56.3
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 7.1e-271 937.6 897 56.3
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.6e-267 926.4 888 56.3
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.4e-266 923.3 923 54.0
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 2.4e-266 922.5 887 55.9
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 5.8e-265 917.9 890 56.3
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 6.4e-264 914.4 753 62.9
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 1.4e-263 913.3 888 55.5
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 8.7e-261 904.0 854 54.3
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 2.6e-257 892.5 894 54.3
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 3.4e-257 892.1 875 54.4
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 7.6e-257 891.0 890 54.0
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 1.1e-255 887.1 883 53.3
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 6.0e-254 881.3 888 54.1
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 2.3e-253 879.4 886 54.2
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 9.6e-252 874.0 880 52.4
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 1.3e-251 873.6 883 53.5
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 1.4e-250 870.2 883 53.0
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 1.8e-250 869.8 883 52.5
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.5e-249 866.7 886 53.2
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.3e-248 863.6 883 52.9
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 2.9e-248 862.4 878 54.0
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 1.1e-247 860.5 878 52.3
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 9.3e-247 857.4 878 51.5
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 1.2e-246 857.1 878 51.5
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.7e-246 855.9 882 52.3
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 4.6e-246 855.1 878 51.6
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 7.9e-246 854.4 878 53.3
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 6.7e-245 851.3 878 51.7
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 1.5e-244 850.1 874 53.5
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 3.7e-243 845.5 887 51.3
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.2e-241 840.5 885 51.5
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 2.5e-239 832.8 883 50.7
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 3.2e-239 832.4 882 51.5
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.1e-237 825.1 883 51.1
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 3.3e-236 822.4 883 51.0
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 2.2e-235 819.7 891 49.4
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 4.8e-235 818.5 744 56.9
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 1.0e-229 800.8 887 49.0
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 6.7e-229 798.1 836 51.3
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 7.4e-228 794.7 908 48.3
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 1.1e-226 790.8 950 48.2
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 2.6e-225 786.2 881 48.4
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 3.4e-225 785.8 884 50.0
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.3e-224 783.9 889 48.3
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 3.0e-221 772.7 886 48.9
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 6.7e-221 771.5 888 47.7
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 2.6e-220 769.6 884 47.3
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 4.8e-219 765.4 890 47.0
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 4.8e-219 765.4 889 46.6
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 4.8e-219 765.4 889 47.7
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 8.2e-219 764.6 886 47.0
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 1.6e-217 760.4 956 45.3
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.6e-217 759.6 898 47.6
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 1.7e-216 756.9 941 46.7
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 6.5e-216 755.0 887 47.4
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 4.2e-215 752.3 878 47.8
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 1.4e-213 747.3 869 48.0
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 5.2e-213 745.3 904 45.8
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 5.2e-213 745.3 888 47.4
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 1.5e-212 743.8 857 49.2
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 7.0e-210 734.9 903 46.2
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 2.0e-209 733.4 700 54.7
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 1.0e-208 731.1 652 59.7
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 1.1e-207 727.6 860 48.8
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 6.8e-205 718.4 884 46.2
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 4.5e-201 705.7 883 44.7
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 8.6e-200 701.4 703 53.8
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.9e-199 700.3 883 43.5
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 7.2e-199 698.4 907 45.0
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.1e-198 696.8 785 48.3
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 2.1e-198 696.8 830 46.9
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 1.4e-197 694.1 904 43.7
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 4.4e-196 689.1 890 44.2
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 6.3e-195 685.3 886 43.9
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 1.0e-192 677.9 735 51.0
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 1.0e-189 667.9 886 43.2
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 7.5e-188 661.8 887 42.7
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 9.8e-188 661.4 888 42.8
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 2.2e-187 660.2 887 42.7
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 1.8e-186 657.1 887 42.2
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 7.0e-186 655.2 899 43.2
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.6e-185 654.1 889 42.2
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 1.3e-184 651.0 878 43.4
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 1.7e-184 650.6 885 42.3
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 8.6e-184 648.3 717 49.8
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 2.5e-183 646.7 731 47.2
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 5.2e-181 639.0 895 42.0
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.5e-180 637.5 848 43.6
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 4.4e-180 636.0 896 42.0
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 5.8e-180 635.6 793 44.9
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 5.4e-178 629.0 877 40.9
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 5.2e-173 612.5 704 49.7
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 7.8e-169 598.6 626 50.8
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.3e-168 597.0 883 40.2
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.1e-167 594.7 685 48.9
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 3.1e-165 586.6 887 40.1
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.4e-162 577.8 883 39.0
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 8.7e-160 568.5 665 46.9
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 9.3e-154 548.5 686 43.4
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 2.7e-153 547.0 887 38.7
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 1.9e-151 540.8 644 47.5
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 1.5e-135 488.0 887 34.6
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 2.8e-126 457.2 780 36.8
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 4.8e-126 456.4 753 38.8
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 2.2e-123 447.6 911 35.0
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 5.5e-122 443.0 552 45.1
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.2e-121 441.8 752 36.2
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 1.3e-115 421.8 694 37.5
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 1.4e-106 391.7 601 38.9
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 4.8e-102 376.7 556 38.7
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.1e-101 375.6 265 71.7
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 3.5e-92 344.0 866 29.3
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 1.6e-89 335.1 243 70.8
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 8.8e-88 329.3 292 62.3
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 8.8e-88 329.3 732 31.0
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 2.0e-87 328.2 812 30.5
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 8.3e-86 322.8 956 28.3
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 8.3e-86 322.8 956 28.3
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.8e-80 305.1 248 63.7
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 3.7e-78 297.4 199 76.9
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 2.4e-77 294.7 395 43.3
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 4.0e-72 277.3 254 57.1
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.3e-70 272.3 195 71.8
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 3.0e-67 261.2 230 62.6
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 1.6e-65 255.4 190 65.3
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 6.8e-64 250.0 354 38.7
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 4.4e-63 247.3 524 30.3
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 5.8e-63 246.9 762 27.8
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 1.7e-59 235.3 188 61.7
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 2.3e-59 235.0 212 54.7
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 6.6e-59 233.4 185 64.9
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.1e-53 216.1 260 46.9
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 4.1e-53 214.2 332 38.0
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.6e-52 212.2 268 42.5
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.6e-49 202.2 230 49.6
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 2.6e-47 194.9 134 72.4
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 1.9e-45 188.7 142 72.5
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 4.6e-44 184.1 219 43.4
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 7.3e-42 176.8 218 44.0
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 7.1e-37 160.2 120 64.2
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 7.8e-36 156.8 223 39.5
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.6e-34 150.6 218 41.3
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 6.9e-32 143.7 155 45.8
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 9.6e-26 123.2 260 29.6
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 1.3e-25 122.9 108 63.0
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 3.7e-25 121.3 88 72.7
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 6.9e-24 117.1 95 56.8
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 9.0e-24 116.7 94 57.4
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 1.0e-22 113.2 100 55.0
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.6e-20 104.4 107 50.5
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 3.3e-18 98.2 174 35.6
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 1.3e-17 96.3 198 32.3
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 4.0e-16 91.3 437 24.3
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 3.0e-11 75.1 128 33.6
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 7.4e-10 70.5 50 66.0
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 1.4e-08 66.2 172 30.8
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 2.9e-06 58.5 63 54.0
SHI10296 Sapria himalayana HOM05D000002 ORTHO05D000001 6.5e-06 57.4 82 43.9
SEGI_15424 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 8.5e-06 57.0 87 34.5


User provided reference genes

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