Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G2878 Erigeron canadensis HOM05D004728 ORTHO05D002375 3.5e-84 315.1 179 100.0
HanXRQChr17g0556311 Helianthus annuus HOM05D004728 ORTHO05D002375 1.0e-35 154.1 161 64.0
Lsat_1_v5_gn_1_2840 Lactuca sativa HOM05D004728 ORTHO05D002375 1.3e-33 147.1 175 57.7
Oeu045990.1 Olea europaea HOM05D004728 ORTHO05D002375 6.1e-20 101.7 157 45.2
Migut.C01097 Erythranthe guttata HOM05D004728 ORTHO05D002375 6.8e-19 98.2 148 49.3
Cfa017900 Carpinus fangiana HOM05D004728 ORTHO05D002375 1.2e-18 97.4 123 52.8
Haze_18251 Corylus avellana HOM05D004728 ORTHO05D002375 1.5e-18 97.1 149 52.3
CiPaw.16G032300 Carya illinoinensis HOM05D004728 ORTHO05D002375 2.0e-18 96.7 125 50.4
MSTRG.1387 Avicennia marina HOM05D004728 ORTHO05D002375 1.7e-17 93.6 128 53.9
Cfa017899 Carpinus fangiana HOM05D004728 ORTHO05D002375 2.2e-17 93.2 124 56.5
MSTRG.1388 Avicennia marina HOM05D004728 ORTHO05D002375 4.1e-16 89.0 140 50.0
CiPaw.16G032400 Carya illinoinensis HOM05D004728 ORTHO05D002375 5.4e-16 88.6 132 45.5
Lsat_1_v5_gn_9_73441 Lactuca sativa HOM05D004728 ORTHO05D002375 7.0e-16 88.2 147 34.0
CSS0049063 Camellia sinensis var. sinensis HOM05D004728 ORTHO05D002375 5.9e-15 85.1 139 46.8
Dinv07081 Davidia involucrata HOM05D004728 ORTHO05D002375 7.7e-15 84.7 141 44.7
PGR042G1769 Punica granatum HOM05D004728 ORTHO05D002375 7.7e-15 84.7 121 50.4
Nn1g05467 Nelumbo nucifera HOM05D004728 ORTHO05D002375 1.3e-14 84.0 136 49.3
GSVIVG01009093001 Vitis vinifera HOM05D004728 ORTHO05D002375 1.3e-14 84.0 138 45.7
CiPaw.15G045100 Carya illinoinensis HOM05D004728 ORTHO05D002375 1.7e-14 83.6 132 41.7
Gohir.D05G225800 Gossypium hirsutum HOM05D004728 ORTHO05D002375 1.7e-14 83.6 138 40.6
Nn5g29980 Nelumbo nucifera HOM05D007310 ORTHO05D002375 1.7e-14 83.6 127 46.5
Eucgr.I02631 Eucalyptus grandis HOM05D007310 ORTHO05D002375 2.2e-14 83.2 116 46.6
CiPaw.15G045000 Carya illinoinensis HOM05D004728 ORTHO05D002375 3.8e-14 82.4 137 40.1
MD15G1317700 Malus domestica HOM05D004728 ORTHO05D002375 3.8e-14 82.4 129 45.0
RcHm_v2.0_Chr7g0238201 Rosa chinensis HOM05D004728 ORTHO05D002375 3.8e-14 82.4 147 47.6
Duzib093G2113 Durio zibethinus HOM05D004728 ORTHO05D002375 5.0e-14 82.0 140 41.4
Gorai.009G233300 Gossypium raimondii HOM05D004728 ORTHO05D002375 6.5e-14 81.6 138 43.5
Dinv24166 Davidia involucrata HOM05D007310 ORTHO05D002375 1.1e-13 80.9 120 43.3
MD08G1189800 Malus domestica HOM05D004728 ORTHO05D002375 1.9e-13 80.1 131 42.7
MD15G1377600 Malus domestica HOM05D004728 ORTHO05D002375 1.9e-13 80.1 123 43.1
Duzib147G1195 Durio zibethinus HOM05D004728 ORTHO05D002375 3.2e-13 79.3 126 45.2
FAN28G1290 Fragaria x ananassa HOM05D004728 ORTHO05D002375 4.2e-13 79.0 118 50.8
Gohir.A02G076900 Gossypium hirsutum HOM05D004728 ORTHO05D002375 4.2e-13 79.0 131 51.1
HanXRQChr17g0556321 Helianthus annuus HOM05D004728 ORTHO05D002375 4.2e-13 79.0 158 29.1
Rhsim06G0077100 Rhododendron simsii HOM05D004728 ORTHO05D002375 4.2e-13 79.0 157 42.7
CANSAT01G0157 Cannabis sativa HOM05D004728 ORTHO05D002375 5.5e-13 78.6 140 42.1
FAN23G2235 Fragaria x ananassa HOM05D004728 ORTHO05D002375 5.5e-13 78.6 118 50.0
FAN19G1066 Fragaria x ananassa HOM05D004728 ORTHO05D002375 7.2e-13 78.2 118 50.0
FAN26G1362 Fragaria x ananassa HOM05D004728 ORTHO05D002375 9.4e-13 77.8 118 49.2
Actinidia33119 Actinidia chinensis HOM05D004728 ORTHO05D002375 1.2e-12 77.4 131 51.9
unitig_0.g2111 Utricularia gibba HOM05D004728 ORTHO05D002375 1.2e-12 77.4 151 43.7
Atru.chr13.1111 Acer truncatum HOM05D004728 ORTHO05D002375 1.6e-12 77.0 120 45.0
Ciclev10030152m.g Citrus clementina HOM05D007310 ORTHO05D002375 1.6e-12 77.0 119 48.7
Lsat_1_v5_gn_9_73501 Lactuca sativa HOM05D004728 ORTHO05D002375 2.1e-12 76.6 147 44.2
ECA247G1585 Erigeron canadensis HOM05D004728 ORTHO05D002375 2.7e-12 76.3 135 32.6
RcHm_v2.0_Chr2g0112251 Rosa chinensis HOM05D004728 ORTHO05D002375 3.6e-12 75.9 122 47.5
RcHm_v2.0_Chr7g0238181 Rosa chinensis HOM05D004728 ORTHO05D002375 3.6e-12 75.9 106 54.7
ECA247G3235 Erigeron canadensis HOM05D004728 ORTHO05D002375 6.1e-12 75.1 130 39.2
Gohir.A05G223100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 6.1e-12 75.1 115 46.1
Gorai.005G094700 Gossypium raimondii HOM05D004728 ORTHO05D002375 6.1e-12 75.1 133 48.1
DCAR_012879 Daucus carota HOM05D004728 ORTHO05D002375 8.0e-12 74.7 132 47.0
FvH4_5g36280 Fragaria vesca HOM05D004728 ORTHO05D002375 8.0e-12 74.7 104 51.0
Lj4A728T44 Lonicera japonica HOM05D004728 ORTHO05D002375 8.0e-12 74.7 161 42.9
Actinidia28038 Actinidia chinensis HOM05D007310 ORTHO05D002375 1.0e-11 74.3 114 44.7
CiPaw.06G156100 Carya illinoinensis HOM05D007310 ORTHO05D002375 1.0e-11 74.3 117 47.0
FAN04G1034 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.0e-11 74.3 104 51.0
FvH4_1g20180 Fragaria vesca HOM05D004728 ORTHO05D002375 1.4e-11 73.9 117 48.7
Oeu045992.1 Olea europaea HOM05D004728 ORTHO05D002375 1.4e-11 73.9 139 42.4
Cfa005685 Carpinus fangiana HOM05D007310 ORTHO05D002375 1.8e-11 73.6 131 39.7
Haze_10565 Corylus avellana HOM05D007310 ORTHO05D002375 1.8e-11 73.6 117 44.4
HanXRQChr09g0250741 Helianthus annuus HOM05D004728 ORTHO05D002375 1.8e-11 73.6 118 42.4
HanXRQChr17g0561041 Helianthus annuus HOM05D004728 ORTHO05D002375 1.8e-11 73.6 139 30.9
Sabra02G0079700 Salix brachista HOM05D004728 ORTHO05D002375 1.8e-11 73.6 114 46.5
PSO761G0222 Papaver somniferum HOM05D007310 ORTHO05D002375 2.3e-11 73.2 116 33.6
Peaxi162Scf01184g00014 Petunia axillaris HOM05D004728 ORTHO05D002375 2.3e-11 73.2 130 47.7
Thecc.08G100900 Theobroma cacao HOM05D004728 ORTHO05D002375 2.3e-11 73.2 182 36.8
Oeu000784.1 Olea europaea HOM05D004728 ORTHO05D002375 3.0e-11 72.8 115 52.2
unitig_747.g21502 Utricularia gibba HOM05D004728 ORTHO05D002375 3.0e-11 72.8 123 49.6
HPP92_019302 Vanilla planifolia HOM05D007310 ORTHO05D002375 3.0e-11 72.8 125 41.6
MSTRG.1389 Avicennia marina HOM05D004728 ORTHO05D002375 4.0e-11 72.4 147 40.8
FAN08G2352 Fragaria x ananassa HOM05D004728 ORTHO05D002375 4.0e-11 72.4 104 52.9
Lsat_1_v5_gn_1_2860 Lactuca sativa HOM05D004728 ORTHO05D002375 4.0e-11 72.4 123 44.7
Lsat_1_v5_gn_9_73380 Lactuca sativa HOM05D004728 ORTHO05D002375 4.0e-11 72.4 145 43.4
Rhsim05G0103200 Rhododendron simsii HOM05D007310 ORTHO05D002375 4.0e-11 72.4 150 35.3
Lj4A95G11 Lonicera japonica HOM05D004728 ORTHO05D002375 5.2e-11 72.0 99 49.5
Sc01g0000880 Simmondsia chinensis HOM05D004728 ORTHO05D002375 5.2e-11 72.0 108 48.1
TAR376G0136 Trochodendron aralioides HOM05D007310 ORTHO05D002375 5.2e-11 72.0 141 44.0
COL.COLO4_11993 Corchorus olitorius HOM05D004728 ORTHO05D002375 6.8e-11 71.6 122 48.4
MBI06_g03314_MAGBIO Magnolia biondii HOM05D007310 ORTHO05D002375 8.8e-11 71.2 128 45.3
Ca_18369_v3 Cicer arietinum L. HOM05D007310 ORTHO05D002375 1.2e-10 70.9 114 48.2
FAN13G0425 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.5e-10 70.5 105 48.6
Hund14099 Selenicereus undatus HOM05D004728 ORTHO05D002375 1.5e-10 70.5 115 48.7
Glyma.13G042400 Glycine max HOM05D007310 ORTHO05D002375 2.0e-10 70.1 130 43.1
MSTRG.25340 Avicennia marina HOM05D004728 ORTHO05D002375 2.6e-10 69.7 137 44.5
HanXRQChr05g0149651 Helianthus annuus HOM05D004728 ORTHO05D002375 3.4e-10 69.3 123 38.2
SalBow7G1327 Salvia bowleyana HOM05D004728 ORTHO05D002375 3.4e-10 69.3 138 40.6
Lsat_1_v5_gn_1_2940 Lactuca sativa HOM05D004728 ORTHO05D002375 4.4e-10 68.9 115 39.1
VMungo0251G1327 Vigna mungo HOM05D007310 ORTHO05D002375 4.4e-10 68.9 122 46.7
COL.COLO4_11997 Corchorus olitorius HOM05D004728 ORTHO05D002375 5.7e-10 68.6 184 39.7
Potri.001G310100 Populus trichocarpa HOM05D007310 ORTHO05D002375 7.5e-10 68.2 115 41.7
CSS0047922 Camellia sinensis var. sinensis HOM05D007310 ORTHO05D002375 9.8e-10 67.8 122 45.9
AUR62012905 Chenopodium quinoa HOM05D007310 ORTHO05D002375 9.8e-10 67.8 132 40.9
Hma1.2p1_1180F.1_g264660 Hydrangea macrophylla HOM05D004728 ORTHO05D002375 9.8e-10 67.8 115 49.6
PSO675G6306 Papaver somniferum HOM05D004728 ORTHO05D002375 9.8e-10 67.8 119 52.9
Hund26995 Selenicereus undatus HOM05D004728 ORTHO05D002375 9.8e-10 67.8 143 39.2
Thecc.02G133200 Theobroma cacao HOM05D007310 ORTHO05D002375 9.8e-10 67.8 139 40.3
ECA247G0078 Erigeron canadensis HOM05D004728 ORTHO05D002375 1.3e-09 67.4 106 47.2
CiPaw.05G032100 Carya illinoinensis HOM05D007310 ORTHO05D002375 1.7e-09 67.0 107 46.7
RcHm_v2.0_Chr2g0112261 Rosa chinensis HOM05D004728 ORTHO05D002375 1.7e-09 67.0 126 44.4
PSO761G0559 Papaver somniferum HOM05D015253 ORTHO05D002375 2.2e-09 66.6 117 29.1
CAN.G523.36 Capsicum annuum HOM05D007310 ORTHO05D002375 2.8e-09 66.2 121 34.7
Duzib116G0314 Durio zibethinus HOM05D004728 ORTHO05D002375 2.8e-09 66.2 124 41.9
Gohir.D02G084100 Gossypium hirsutum HOM05D004728 ORTHO05D002375 2.8e-09 66.2 123 46.3
Gorai.009G233200 Gossypium raimondii HOM05D004728 ORTHO05D002375 2.8e-09 66.2 167 41.9
Psat7g100440 Pisum sativum HOM05D007310 ORTHO05D002375 2.8e-09 66.2 119 43.7
Nitab4.5_0006625g0010 Nicotiana tabacum HOM05D007310 ORTHO05D002375 3.7e-09 65.9 120 37.5
PGR142G1548 Punica granatum HOM05D007310 ORTHO05D002375 3.7e-09 65.9 119 46.2
TAR625G1009 Trochodendron aralioides HOM05D007310 ORTHO05D002375 3.7e-09 65.9 130 31.5
Potri.017G050000 Populus trichocarpa HOM05D007310 ORTHO05D002375 4.9e-09 65.5 110 45.5
MELO3C018616.2 Cucumis melo HOM05D007310 ORTHO05D002375 6.3e-09 65.1 121 44.6
TWI14G0938 Tripterygium wilfordii HOM05D007310 ORTHO05D002375 6.3e-09 65.1 107 44.9
CANSAT11G0123 Cannabis sativa HOM05D007310 ORTHO05D002375 8.3e-09 64.7 107 42.1
SGA_v2.0_scaffold48G17928 Striga asiatica HOM05D004728 ORTHO05D002375 8.3e-09 64.7 137 42.3
Aqoxy476s002 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 1.1e-08 64.3 119 31.9
Aqoxy6G00703 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 1.1e-08 64.3 119 31.9
EL10Ac1g01137 Beta vulgaris HOM05D004728 ORTHO05D002375 1.1e-08 64.3 142 30.3
EL10Ac9g21224 Beta vulgaris HOM05D007310 ORTHO05D002375 1.1e-08 64.3 125 36.0
Potri.002G101600 Populus trichocarpa HOM05D004728 ORTHO05D002375 1.1e-08 64.3 113 47.8
AUR62011722 Chenopodium quinoa HOM05D007310 ORTHO05D002375 1.4e-08 63.9 132 37.9
FvH4_1g20190 Fragaria vesca HOM05D004728 ORTHO05D002375 1.4e-08 63.9 118 44.9
FAN19G1373 Fragaria x ananassa HOM05D004728 ORTHO05D002375 1.4e-08 63.9 118 44.9
Lj4A95G12 Lonicera japonica HOM05D004728 ORTHO05D002375 1.4e-08 63.9 120 40.8
Sabra16G0196000 Salix brachista HOM05D007310 ORTHO05D002375 1.4e-08 63.9 109 45.0
COL.COLO4_32323 Corchorus olitorius HOM05D007310 ORTHO05D002375 1.8e-08 63.5 130 39.2
Lj2A538G23 Lonicera japonica HOM05D004728 ORTHO05D002375 1.8e-08 63.5 108 31.5
CsaV3_7G006790 Cucumis sativus L. HOM05D007310 ORTHO05D002375 2.4e-08 63.2 122 46.7
HanXRQChr13g0391971 Helianthus annuus HOM05D004728 ORTHO05D002375 2.4e-08 63.2 121 30.6
Actinidia10350 Actinidia chinensis HOM05D004728 ORTHO05D002375 3.1e-08 62.8 131 42.0
DCAR_012878 Daucus carota HOM05D004728 ORTHO05D002375 3.1e-08 62.8 132 38.6
DCAR_021882 Daucus carota HOM05D007310 ORTHO05D002375 4.1e-08 62.4 159 33.3
FvH4_2g13500 Fragaria vesca HOM05D007310 ORTHO05D002375 4.1e-08 62.4 110 30.9
FAN24G3359 Fragaria x ananassa HOM05D007310 ORTHO05D004145 4.1e-08 62.4 110 30.9
Hma1.2p1_0784F.1_g217300 Hydrangea macrophylla HOM05D007310 ORTHO05D002375 4.1e-08 62.4 103 45.6
Peaxi162Scf00299g00914 Petunia axillaris HOM05D007310 ORTHO05D002375 4.1e-08 62.4 160 25.6
QL02p002263 Quercus lobata HOM05D004728 ORTHO05D002375 4.1e-08 62.4 92 53.3
Migut.C01096 Erythranthe guttata HOM05D004728 ORTHO05D002375 5.4e-08 62.0 142 38.0
Lalb_Chr09g0326871 Lupinus albus HOM05D007310 ORTHO05D002375 7.0e-08 61.6 105 26.7
ClCG09G015950 Citrullus lanatus HOM05D007310 ORTHO05D002375 9.1e-08 61.2 98 49.0
Phvul.002G211100 Phaseolus vulgaris HOM05D007310 ORTHO05D002375 1.2e-07 60.8 101 48.5
Duzib093G1766 Durio zibethinus HOM05D004728 ORTHO05D002375 1.6e-07 60.5 98 57.1
TPR.G2868 Trifolium pratense HOM05D007310 ORTHO05D002375 1.6e-07 60.5 120 40.0
arahy.Tifrunner.gnm1.ann1.30DIRF Arachis hypogaea HOM05D012119 ORTHO05D002375 2.0e-07 60.1 130 39.2
arahy.Tifrunner.gnm1.ann1.KVX74B Arachis hypogaea HOM05D007310 ORTHO05D002375 2.0e-07 60.1 105 45.7
arahy.Tifrunner.gnm1.ann1.U7VQVC Arachis hypogaea HOM05D007310 ORTHO05D002375 2.0e-07 60.1 105 45.7
CANSAT25G2000 Cannabis sativa HOM05D004728 ORTHO05D002375 2.0e-07 60.1 118 45.8
Duzib041G0412 Durio zibethinus HOM05D004728 ORTHO05D002375 2.0e-07 60.1 119 47.9
ECA232G3092 Erigeron canadensis HOM05D004728 ORTHO05D045252 2.0e-07 60.1 118 39.8
Potri.002G101500 Populus trichocarpa HOM05D004728 ORTHO05D002375 2.0e-07 60.1 102 45.1
Sc08g0003780 Simmondsia chinensis HOM05D007310 ORTHO05D002375 2.0e-07 60.1 172 37.2
PGSC0003DMG400012536 Solanum tuberosum HOM05D007310 ORTHO05D002375 2.0e-07 60.1 120 28.3
vmacro04704 Vaccinium macrocarpon HOM05D004728 ORTHO05D002375 2.0e-07 60.1 139 39.6
Duzib248G0762 Durio zibethinus HOM05D007310 ORTHO05D002375 2.7e-07 59.7 113 41.6
Sabra02G0079600 Salix brachista HOM05D004728 ORTHO05D002375 2.7e-07 59.7 128 44.5
Sed0021578 Sechium edule HOM05D007310 ORTHO05D002375 3.5e-07 59.3 106 46.2
Aqoxy476s001 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 4.5e-07 58.9 114 48.2
Aqoxy6G00704 Aquilegia oxysepala HOM05D004728 ORTHO05D002375 4.5e-07 58.9 114 48.2
DCAR_003461 Daucus carota HOM05D004728 ORTHO05D002375 4.5e-07 58.9 101 31.7
Manes.07G038100 Manihot esculenta HOM05D007310 ORTHO05D002375 4.5e-07 58.9 120 38.3
Medtr4g093820 Medicago truncatula HOM05D007310 ORTHO05D002375 4.5e-07 58.9 122 40.2
Sopen01g048060 Solanum pennellii HOM05D007310 ORTHO05D002375 4.5e-07 58.9 120 27.5
Cpa.g.sc42.21 Carica papaya HOM05D007310 ORTHO05D002375 5.9e-07 58.5 142 41.5
Migut.C01161 Erythranthe guttata HOM05D004728 ORTHO05D002375 5.9e-07 58.5 134 41.0
Manes.07G035800 Manihot esculenta HOM05D007310 ORTHO05D002375 5.9e-07 58.5 123 37.4
QL11p023211 Quercus lobata HOM05D007310 ORTHO05D002375 5.9e-07 58.5 124 43.5
Glyma.02G210100 Glycine max HOM05D012119 ORTHO05D002375 1.3e-06 57.4 135 28.9
Solyc01g105600.3 Solanum lycopersicum HOM05D007310 ORTHO05D002375 1.3e-06 57.4 120 26.7
BcaB08g34551 Brassica carinata HOM05D007310 ORTHO05D002375 1.7e-06 57.0 132 38.6
Thecc.08G100800 Theobroma cacao HOM05D004728 ORTHO05D002375 1.7e-06 57.0 51 49.0
arahy.Tifrunner.gnm1.ann1.9U5DT8 Arachis hypogaea HOM05D012119 ORTHO05D002375 2.9e-06 56.2 133 35.3
arahy.Tifrunner.gnm1.ann1.RDUL0C Arachis hypogaea HOM05D012119 ORTHO05D002375 2.9e-06 56.2 126 38.1
arahy.Tifrunner.gnm1.ann1.69RQXC Arachis hypogaea HOM05D012119 ORTHO05D002375 5.0e-06 55.5 130 37.7
Cc02_g21140 Coffea canephora HOM05D007310 ORTHO05D002375 5.0e-06 55.5 106 40.6
PSO700G0139 Papaver somniferum HOM05D007310 ORTHO05D002375 5.0e-06 55.5 119 34.5
MSTRG.25397 Avicennia marina HOM05D004728 ORTHO05D002375 6.6e-06 55.1 145 41.4
FAN27G1440 Fragaria x ananassa HOM05D007310 ORTHO05D002375 6.6e-06 55.1 110 31.8
SGA_v2.0_scaffold14G07142 Striga asiatica HOM05D007310 ORTHO05D002375 8.6e-06 54.7 103 26.2
SGA_v2.0_scaffold52G18993 Striga asiatica HOM05D004728 ORTHO05D002375 8.6e-06 54.7 134 41.0


User provided reference genes

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