Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G2861 Erigeron canadensis HOM05D004998 ORTHO05D006104 2.9e-97 358.6 186 100.0
HanXRQChr07g0197281 Helianthus annuus HOM05D004998 ORTHO05D006104 7.4e-61 237.7 186 71.0
HanXRQChr12g0374241 Helianthus annuus HOM05D004998 ORTHO05D006104 1.8e-59 233.0 186 69.4
Lsat_1_v5_gn_9_23841 Lactuca sativa HOM05D004998 ORTHO05D006104 7.2e-48 194.5 185 63.2
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 6.5e-41 171.4 193 55.4
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 6.5e-41 171.4 193 56.0
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 6.5e-41 171.4 193 56.0
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 6.5e-41 171.4 193 56.0
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 8.0e-39 164.5 194 54.6
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.8e-38 163.3 183 55.7
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.2e-37 160.6 185 51.9
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 3.3e-37 159.1 188 52.1
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 3.3e-37 159.1 191 53.9
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 2.2e-36 156.4 194 53.1
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 6.3e-36 154.8 195 50.8
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 3.1e-35 152.5 192 50.5
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 1.6e-34 150.2 190 51.1
DCAR_005961 Daucus carota HOM05D004998 ORTHO05D006104 4.5e-34 148.7 191 51.3
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 4.5e-34 148.7 180 54.4
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 5.9e-34 148.3 197 51.8
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 1.3e-33 147.1 193 48.2
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 2.2e-33 146.4 190 47.9
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 2.9e-33 146.0 197 54.8
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 2.9e-33 146.0 196 50.5
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 5.0e-33 145.2 193 49.7
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 6.5e-33 144.8 192 51.6
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 1.5e-32 143.7 193 52.3
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.5e-32 143.7 194 52.1
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 1.9e-32 143.3 194 48.5
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 1.9e-32 143.3 196 54.1
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 2.5e-32 142.9 191 53.4
CsaV3_6G016720 Cucumis sativus L. HOM05D004998 ORTHO05D006104 5.5e-32 141.7 194 51.0
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 5.5e-32 141.7 194 50.5
MELO3C025903.2 Cucumis melo HOM05D004998 ORTHO05D006104 9.4e-32 141.0 195 50.8
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 1.2e-31 140.6 192 51.6
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 2.1e-31 139.8 200 49.5
MBI14_g12121_MAGBIO Magnolia biondii HOM05D004998 ORTHO05D006104 4.7e-31 138.7 195 49.2
CARHR285830 Cardamine hirsuta HOM05D004998 ORTHO05D006104 1.0e-30 137.5 184 48.4
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.4e-30 137.1 199 50.3
AUR62009547 Chenopodium quinoa HOM05D004998 ORTHO05D006104 2.3e-30 136.3 191 51.8
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 3.0e-30 136.0 192 51.0
AUR62001761 Chenopodium quinoa HOM05D004998 ORTHO05D006104 4.0e-30 135.6 191 51.3
Carub.0008s2013 Capsella rubella HOM05D004998 ORTHO05D006104 5.2e-30 135.2 184 50.0
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 5.2e-30 135.2 191 51.8
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 6.8e-30 134.8 194 54.1
AL8G35930 Arabidopsis lyrata HOM05D004998 ORTHO05D006104 2.0e-29 133.3 184 48.4
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 3.4e-29 132.5 198 49.0
SalBow3G1756 Salvia bowleyana HOM05D004998 ORTHO05D006104 3.4e-29 132.5 190 46.8
MSTRG.18567 Avicennia marina HOM05D004998 ORTHO05D006104 5.7e-29 131.7 185 49.2
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 7.5e-29 131.3 193 49.7
EL10Ac7g16043 Beta vulgaris HOM05D004998 ORTHO05D006104 1.3e-28 130.6 191 50.3
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.7e-28 130.2 211 47.9
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 2.8e-28 129.4 194 50.0
Medtr2g097480 Medicago truncatula HOM05D004998 ORTHO05D006104 2.8e-28 129.4 192 49.0
Lj3g0014072 Lotus japonicus HOM05D004998 ORTHO05D006104 4.8e-28 128.6 194 45.9
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 4.8e-28 128.6 195 48.2
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 6.3e-28 128.3 202 46.5
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 8.3e-28 127.9 178 50.6
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 8.3e-28 127.9 187 48.1
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 8.3e-28 127.9 186 50.5
Sp6g21150 Schrenkiella parvula HOM05D004998 ORTHO05D006104 1.1e-27 127.5 184 47.3
arahy.Tifrunner.gnm1.ann1.AD2TJP Arachis hypogaea HOM05D004998 ORTHO05D006104 1.4e-27 127.1 184 45.1
arahy.Tifrunner.gnm1.ann1.JSTV8M Arachis hypogaea HOM05D004998 ORTHO05D006104 1.4e-27 127.1 184 45.7
PGSC0003DMG400002149 Solanum tuberosum HOM05D004998 ORTHO05D006104 1.4e-27 127.1 195 48.2
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 2.4e-27 126.3 187 46.0
Sopen06g001560 Solanum pennellii HOM05D004998 ORTHO05D006104 3.1e-27 125.9 195 48.7
Solyc06g005600.3 Solanum lycopersicum HOM05D004998 ORTHO05D006104 4.1e-27 125.6 195 48.7
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 5.4e-27 125.2 182 51.6
AT5G59460 Arabidopsis thaliana HOM05D004998 ORTHO05D006104 9.1e-27 124.4 184 47.3
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 9.1e-27 124.4 191 45.5
ATR0559G067 Amborella trichopoda HOM05D004998 ORTHO05D006104 2.7e-26 122.9 184 45.7
C03p13690 Brassica napus HOM05D004998 ORTHO05D006104 2.7e-26 122.9 186 45.7
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 3.5e-26 122.5 183 47.0
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 4.5e-26 122.1 189 46.0
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 7.7e-26 121.3 181 48.1
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 1.3e-25 120.6 195 49.2
Ah.08g219770 Amaranthus hybridus HOM05D004998 ORTHO05D006104 1.7e-25 120.2 201 45.3
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 3.8e-25 119.0 193 42.5
Aqoxy1G00915 Aquilegia oxysepala HOM05D004998 ORTHO05D006104 6.6e-25 118.2 195 46.2
Dinv06259 Davidia involucrata HOM05D004998 ORTHO05D006104 8.6e-25 117.9 117 59.0
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 1.5e-24 117.1 194 44.8
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 1.5e-24 117.1 192 44.8
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 1.5e-24 117.1 190 44.2
CANSAT54G1321 Cannabis sativa HOM05D004998 ORTHO05D006104 4.2e-24 115.5 189 47.6
Thhalv10014846m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 4.2e-24 115.5 186 43.5
Nn2g13381 Nelumbo nucifera HOM05D004998 ORTHO05D006104 4.2e-24 115.5 187 46.5
COL.COLO4_18543 Corchorus olitorius HOM05D004998 ORTHO05D006104 7.2e-24 114.8 183 46.4
BcaB05g22508 Brassica carinata HOM05D004998 ORTHO05D006104 9.5e-24 114.4 184 42.9
Os01g0144600 Oryza sativa ssp. japonica HOM05D004998 ORTHO05D006104 1.6e-23 113.6 206 42.2
Glyma.13G337700 Glycine max HOM05D004998 ORTHO05D006104 4.7e-23 112.1 192 42.2
Gohir.D05G094800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 6.1e-23 111.7 181 44.8
Gorai.009G098000 Gossypium raimondii HOM05D004998 ORTHO05D006104 6.1e-23 111.7 181 44.8
Aa31LG4G15620 Aethionema arabicum HOM05D004998 ORTHO05D006104 8.0e-23 111.3 192 43.8
PSO339G2709 Papaver somniferum HOM05D004998 ORTHO05D006104 3.0e-22 109.4 197 40.6
BcaB08g36256 Brassica carinata HOM05D004998 ORTHO05D006104 6.8e-22 108.2 186 44.6
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 8.9e-22 107.8 193 42.0
BcaC03g14012 Brassica carinata HOM05D004998 ORTHO05D006104 2.0e-21 106.7 184 45.1
C02p12480 Brassica napus HOM05D004998 ORTHO05D006104 2.0e-21 106.7 184 45.1
BolC2t07348H Brassica oleracea HOM05D004998 ORTHO05D006104 2.0e-21 106.7 184 45.1
BraA02t05793Z Brassica rapa HOM05D004998 ORTHO05D006104 2.0e-21 106.7 184 45.1
Haze_24126 Corylus avellana HOM05D004998 ORTHO05D006104 2.0e-21 106.7 104 60.6
A02p07120 Brassica napus HOM05D004998 ORTHO05D006104 5.7e-21 105.1 184 45.1
TPR.G5593 Trifolium pratense HOM05D004998 ORTHO05D006104 5.7e-21 105.1 192 42.7
BraA10t43749Z Brassica rapa HOM05D004998 ORTHO05D006104 1.7e-20 103.6 166 44.6
Thhalv10002686m.g Eutrema salsugineum HOM05D004998 ORTHO05D006104 1.7e-20 103.6 196 43.4
Aa31LG1G11810 Aethionema arabicum HOM05D000959 ORTHO05D000775 4.9e-20 102.1 175 40.6
Sed0008555 Sechium edule HOM05D004998 ORTHO05D006104 6.3e-20 101.7 194 42.3
Gohir.D03G123600 Gossypium hirsutum HOM05D004998 ORTHO05D006104 8.3e-20 101.3 174 47.1
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 1.8e-19 100.1 189 41.3
Gohir.A03G043800 Gossypium hirsutum HOM05D004998 ORTHO05D006104 4.1e-19 99.0 174 46.6
Nitab4.5_0006945g0010 Nicotiana tabacum HOM05D004998 ORTHO05D006104 4.1e-19 99.0 192 41.7
A10p16680 Brassica napus HOM05D004998 ORTHO05D006104 7.0e-19 98.2 166 43.4
BolC3t13819H Brassica oleracea HOM05D004998 ORTHO05D006104 7.0e-19 98.2 133 48.9
Gorai.003G130300 Gossypium raimondii HOM05D004998 ORTHO05D006104 1.2e-18 97.4 174 46.6
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 7.8e-18 94.7 133 47.4
CDE02G2808 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 3.9e-17 92.4 181 38.7
Zm00001eb124480 Zea mays HOM05D004998 ORTHO05D006104 6.6e-17 91.7 82 59.8
Cpa.g.sc81.121 Carica papaya HOM05D004998 ORTHO05D006104 1.9e-16 90.1 80 58.8
HPP92_006623 Vanilla planifolia HOM05D004998 ORTHO05D006104 3.3e-16 89.4 235 34.0
C09p51870 Brassica napus HOM05D004998 ORTHO05D006104 5.6e-16 88.6 144 42.4
Nitab4.5_0007132g0030 Nicotiana tabacum HOM05D004998 ORTHO05D006104 6.1e-15 85.1 177 39.5
C03p13710 Brassica napus HOM05D004998 ORTHO05D006104 1.4e-14 84.0 138 44.9
BolC9t58049H Brassica oleracea HOM05D004998 ORTHO05D006104 4.0e-14 82.4 133 45.1
CDE08G1537 Ceratophyllum demersum HOM05D004998 ORTHO05D006104 6.8e-14 81.6 133 42.9
BcaB01g04577 Brassica carinata HOM05D004998 ORTHO05D006104 1.9e-11 73.6 133 43.6
FAN21G1361 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.0e-11 71.6 95 47.4
FAN25G2664 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.0e-11 71.6 95 47.4
BcaC04g19766 Brassica carinata HOM05D004998 ORTHO05D006104 6.0e-10 68.6 170 37.6
BcaB08g36255 Brassica carinata HOM05D004998 ORTHO05D006104 3.9e-09 65.9 167 36.5
BcaC01g06521 Brassica carinata HOM05D004998 ORTHO05D006104 1.1e-08 64.3 186 34.4
FvH4_3g41460 Fragaria vesca HOM05D004998 ORTHO05D006104 4.3e-08 62.4 179 34.1
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 9.5e-08 61.2 139 34.5
SEGI_30466 Sequoiadendron giganteum HOM05D004998 ORTHO05D006104 9.5e-08 61.2 142 35.2
FAN11G1834 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.2e-07 60.8 188 32.4
Mapoly0094s0023 Marchantia polymorpha HOM05D004998 ORTHO05D006104 8.0e-07 58.2 99 38.4
BcaC09g48433 Brassica carinata HOM05D004998 ORTHO05D006104 1.1e-06 57.8 216 33.3
Pp3c16_15780 Physcomitrium patens HOM05D004998 ORTHO05D006104 3.1e-06 56.2 171 30.4


User provided reference genes

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