Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 2.0e-90 335.9 183 100.0
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 6.8e-67 257.7 185 80.0
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 7.3e-61 237.7 181 75.7
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 2.0e-50 203.0 175 65.7
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 3.8e-49 198.7 175 62.9
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 4.1e-48 195.3 153 71.9
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 9.6e-45 184.1 168 64.9
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 1.2e-44 183.7 175 62.9
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.1e-44 183.0 162 65.4
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 4.0e-43 178.7 176 59.7
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.5e-42 176.8 177 60.5
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 4.4e-42 175.3 166 61.4
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 8.4e-41 171.0 177 57.1
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 1.4e-40 170.2 170 57.6
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 1.9e-40 169.9 175 58.3
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 4.6e-39 165.2 154 60.4
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 1.0e-38 164.1 152 60.5
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 1.0e-38 164.1 152 60.5
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.3e-38 162.9 169 61.5
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 3.0e-38 162.5 166 56.6
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 3.9e-38 162.2 175 57.7
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 3.9e-38 162.2 156 61.5
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 6.6e-38 161.4 171 56.7
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 2.5e-37 159.5 170 56.5
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 2.5e-37 159.5 152 63.8
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 4.3e-37 158.7 154 58.4
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 9.6e-37 157.5 173 59.0
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 1.6e-36 156.8 180 58.9
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 2.1e-36 156.4 168 60.1
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 2.8e-36 156.0 157 61.8
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 3.6e-36 155.6 174 55.2
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 3.6e-36 155.6 129 66.7
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 3.6e-36 155.6 144 61.1
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 1.1e-35 154.1 156 60.9
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 2.4e-35 152.9 175 55.4
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 2.4e-35 152.9 187 51.3
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 4.0e-35 152.1 152 59.9
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 6.9e-35 151.4 169 56.8
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.0e-35 151.0 161 57.8
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 9.0e-35 151.0 155 60.6
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 1.2e-34 150.6 175 54.3
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 1.2e-34 150.6 156 57.7
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 1.5e-34 150.2 152 59.9
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 4.5e-34 148.7 169 54.4
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 7.6e-34 147.9 151 60.9
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 9.9e-34 147.5 167 57.5
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 9.9e-34 147.5 162 57.4
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 9.9e-34 147.5 151 60.3
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 1.7e-33 146.7 148 62.2
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 2.2e-33 146.4 151 57.0
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 2.2e-33 146.4 153 58.2
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 2.9e-33 146.0 156 57.1
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 6.4e-33 144.8 152 58.6
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 8.4e-33 144.4 160 57.5
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.4e-32 143.7 152 59.2
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 1.4e-32 143.7 163 52.8
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 1.9e-32 143.3 154 59.1
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 2.4e-32 142.9 154 59.1
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 3.2e-32 142.5 152 55.3
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 9.3e-32 141.0 151 57.6
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.2e-31 140.6 166 55.4
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 2.1e-31 139.8 159 56.0
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 2.7e-31 139.4 164 53.7
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 3.5e-31 139.0 150 54.7
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 4.6e-31 138.7 170 51.2
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 4.6e-31 138.7 173 52.6
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 1.8e-30 136.7 160 54.4
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.8e-30 136.7 169 52.1
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 3.9e-30 135.6 136 58.8
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 8.7e-30 134.4 175 50.9
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.5e-29 133.7 151 55.6
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 1.9e-29 133.3 163 54.0
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 4.3e-29 132.1 169 52.1
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 5.6e-29 131.7 143 57.3
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 5.6e-29 131.7 143 57.3
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 7.4e-29 131.3 194 46.4
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 9.6e-29 131.0 160 52.5
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 3.7e-28 129.0 148 56.8
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 6.2e-28 128.3 143 55.9
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 6.2e-28 128.3 177 48.6
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 8.1e-28 127.9 151 53.0
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 8.1e-28 127.9 161 53.4
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.1e-27 127.5 154 51.3
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 2.4e-27 126.3 143 54.5
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 3.1e-27 125.9 141 53.2
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 4.0e-27 125.6 171 50.9
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 5.3e-27 125.2 115 67.0
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 9.0e-27 124.4 150 53.3
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 5.8e-26 121.7 135 53.3
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 7.6e-26 121.3 169 50.3
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 9.9e-26 120.9 163 50.3
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 1.3e-25 120.6 161 50.9
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 2.9e-25 119.4 107 63.6
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 2.9e-25 119.4 157 47.8
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.8e-25 119.0 155 53.5
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 3.8e-25 119.0 140 54.3
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 4.9e-25 118.6 155 51.0
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 4.9e-25 118.6 163 49.7
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 1.1e-24 117.5 156 50.6
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.1e-24 117.5 163 50.3
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 2.4e-24 116.3 170 47.1
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 3.2e-24 115.9 152 52.0
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 3.2e-24 115.9 153 47.1
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 3.2e-24 115.9 155 50.3
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 1.2e-23 114.0 156 49.4
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.6e-23 113.6 151 49.7
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 1.6e-23 113.6 158 46.2
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 2.1e-23 113.2 138 55.1
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 2.1e-23 113.2 138 55.1
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.6e-23 112.1 154 51.3
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 6.0e-23 111.7 152 48.7
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 7.9e-23 111.3 112 55.4
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 1.0e-22 110.9 130 52.3
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 3.0e-22 109.4 148 51.4
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 2.5e-21 106.3 147 44.2
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 3.3e-21 105.9 157 45.9
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.3e-20 104.0 107 57.0
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 1.8e-19 100.1 98 61.2
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 4.0e-19 99.0 116 55.2
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 3.4e-18 95.9 154 43.5
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 2.2e-17 93.2 162 41.4
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.5e-16 89.7 101 53.5
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 4.2e-16 89.0 96 52.1
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 1.2e-15 87.4 86 54.7
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.6e-15 87.0 115 47.8
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 2.7e-15 86.3 110 47.3
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 3.5e-15 85.9 170 38.2
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 5.7e-13 78.6 84 56.0
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 1.6e-12 77.0 95 55.8
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 4.8e-12 75.5 83 59.0
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 6.3e-12 75.1 117 43.6
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 8.2e-12 74.7 119 43.7
ECA232G0032 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.1e-11 74.3 103 49.5
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 4.1e-11 72.4 119 42.9
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 1.2e-10 70.9 145 39.3
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 3.4e-10 69.3 57 64.9
Lsat_1_v5_gn_2_102140 Lactuca sativa HOM05D003089 ORTHO05D003544 5.9e-10 68.6 71 60.6
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.1e-08 64.3 59 61.0
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 1.9e-08 63.5 151 37.7
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.5e-08 63.2 78 51.3
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.5e-08 63.2 78 51.3
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.5e-08 63.2 78 51.3
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 9.4e-08 61.2 42 66.7
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 6.1e-07 58.5 69 55.1
Cre02.g097334 Chlamydomonas reinhardtii HOM05D004927 ORTHO05D005798 7.9e-07 58.2 152 33.6
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.0e-06 57.8 57 57.9
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 1.4e-06 57.4 61 62.3


User provided reference genes

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