Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G2705 Erigeron canadensis HOM05D006006 ORTHO05D007566 7.6e-149 530.4 255 100.0
HanXRQChr04g0109001 Helianthus annuus HOM05D006006 ORTHO05D007566 1.3e-129 466.5 246 88.2
Lsat_1_v5_gn_1_8980 Lactuca sativa HOM05D006006 ORTHO05D007566 7.4e-128 460.7 244 88.5
HanXRQChr08g0217661 Helianthus annuus HOM05D006006 ORTHO05D007566 1.3e-124 449.9 244 86.5
Duzib093G0547 Durio zibethinus HOM05D006006 ORTHO05D007566 5.7e-120 434.5 247 80.2
Manes.02G175900 Manihot esculenta HOM05D006006 ORTHO05D007566 5.7e-120 434.5 252 79.0
CSS0049727 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 2.8e-119 432.2 247 81.4
Lj7A365T41 Lonicera japonica HOM05D006006 ORTHO05D007566 4.8e-119 431.4 246 79.7
COL.COLO4_04848 Corchorus olitorius HOM05D006006 ORTHO05D007566 6.3e-119 431.0 248 79.0
Nitab4.5_0000633g0110 Nicotiana tabacum HOM05D006006 ORTHO05D007566 1.4e-118 429.9 257 78.6
Sopen06g020580 Solanum pennellii HOM05D006006 ORTHO05D007566 1.4e-118 429.9 257 79.0
PGR042G3502 Punica granatum HOM05D006006 ORTHO05D007566 1.8e-118 429.5 242 80.2
Solyc06g060460.3 Solanum lycopersicum HOM05D006006 ORTHO05D007566 1.8e-118 429.5 257 78.6
CSS0044653 Camellia sinensis var. sinensis HOM05D006006 ORTHO05D007566 6.9e-118 427.6 247 80.6
Gorai.005G081300 Gossypium raimondii HOM05D006006 ORTHO05D007566 9.0e-118 427.2 246 78.0
Cc10_g14250 Coffea canephora HOM05D006006 ORTHO05D007566 1.5e-117 426.4 247 78.5
QL02p024995 Quercus lobata HOM05D006006 ORTHO05D007566 1.5e-117 426.4 245 79.6
Gohir.D02G072100 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.0e-117 426.0 246 77.6
Thecc.08G145800 Theobroma cacao HOM05D006006 ORTHO05D007566 2.6e-117 425.6 244 79.5
TWI34G1885 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 2.6e-117 425.6 255 77.3
Ciclev10001700m.g Citrus clementina HOM05D006006 ORTHO05D007566 3.4e-117 425.2 246 78.5
GSVIVG01010048001 Vitis vinifera HOM05D006006 ORTHO05D007566 4.5e-117 424.9 244 79.5
CAN.G62.45 Capsicum annuum HOM05D006006 ORTHO05D007566 7.7e-117 424.1 258 76.7
Gohir.A02G066200 Gossypium hirsutum HOM05D006006 ORTHO05D007566 7.7e-117 424.1 246 77.6
PGSC0003DMG400017575 Solanum tuberosum HOM05D006006 ORTHO05D007566 7.7e-117 424.1 257 77.4
Oeu051259.1 Olea europaea HOM05D006006 ORTHO05D007566 1.7e-116 422.9 245 80.0
Aqoxy6G00385 Aquilegia oxysepala HOM05D006006 ORTHO05D007566 8.5e-116 420.6 246 77.6
Gorai.013G105300 Gossypium raimondii HOM05D006006 ORTHO05D007566 8.5e-116 420.6 242 78.5
Cfa018352 Carpinus fangiana HOM05D006006 ORTHO05D007566 2.5e-115 419.1 245 79.2
Gohir.D03G061500 Gossypium hirsutum HOM05D006006 ORTHO05D007566 2.5e-115 419.1 242 78.9
THA.LOC104813696 Tarenaya hassleriana HOM05D006006 ORTHO05D007566 4.2e-115 418.3 257 76.3
DCAR_008158 Daucus carota HOM05D006006 ORTHO05D007566 5.5e-115 417.9 251 76.9
AT1G21370 Arabidopsis thaliana HOM05D006006 ORTHO05D007566 1.6e-114 416.4 248 77.4
CiPaw.15G020800 Carya illinoinensis HOM05D006006 ORTHO05D007566 1.6e-114 416.4 245 78.0
Lalb_Chr04g0263651 Lupinus albus HOM05D006006 ORTHO05D007566 1.6e-114 416.4 245 78.4
Lj1g0023019 Lotus japonicus HOM05D006006 ORTHO05D007566 2.1e-114 416.0 245 77.1
TWI60G1394 Tripterygium wilfordii HOM05D006006 ORTHO05D007566 2.1e-114 416.0 256 75.0
TAR381G0495 Trochodendron aralioides HOM05D006006 ORTHO05D007566 2.1e-114 416.0 246 76.4
Potri.002G071300 Populus trichocarpa HOM05D006006 ORTHO05D007566 2.7e-114 415.6 245 78.0
Glyma.13G039000 Glycine max HOM05D006006 ORTHO05D007566 3.6e-114 415.2 255 76.5
TPR.G33300 Trifolium pratense HOM05D006006 ORTHO05D007566 3.6e-114 415.2 250 77.2
Nn1g06190 Nelumbo nucifera HOM05D006006 ORTHO05D007566 4.6e-114 414.8 247 78.1
Peaxi162Scf00051g00516 Petunia axillaris HOM05D006006 ORTHO05D007566 6.1e-114 414.5 234 81.6
AL1G34470 Arabidopsis lyrata HOM05D006006 ORTHO05D007566 7.9e-114 414.1 246 76.8
MSTRG.24200 Avicennia marina HOM05D006006 ORTHO05D007566 1.0e-113 413.7 244 78.3
Sabra02G0056100 Salix brachista HOM05D006006 ORTHO05D007566 1.4e-113 413.3 247 76.9
Carub.0001s2078 Capsella rubella HOM05D006006 ORTHO05D007566 2.3e-113 412.5 246 76.8
Ca_12665_v3 Cicer arietinum L. HOM05D006006 ORTHO05D007566 2.3e-113 412.5 245 77.1
Atru.chr13.1712 Acer truncatum HOM05D006006 ORTHO05D007566 3.0e-113 412.1 257 73.9
Glyma.14G123000 Glycine max HOM05D006006 ORTHO05D007566 3.0e-113 412.1 255 75.3
Eucgr.F04261 Eucalyptus grandis HOM05D006006 ORTHO05D007566 3.9e-113 411.8 243 77.0
Nn5g28652 Nelumbo nucifera HOM05D006006 ORTHO05D007566 3.9e-113 411.8 243 76.5
Phvul.001G072900 Phaseolus vulgaris HOM05D006006 ORTHO05D007566 5.1e-113 411.4 245 78.0
Thhalv10008107m.g Eutrema salsugineum HOM05D006006 ORTHO05D007566 6.7e-113 411.0 246 76.0
Sp1g18920 Schrenkiella parvula HOM05D006006 ORTHO05D007566 6.7e-113 411.0 246 76.4
ClCG09G009860 Citrullus lanatus HOM05D006006 ORTHO05D007566 8.8e-113 410.6 246 76.4
Migut.N03230 Erythranthe guttata HOM05D006006 ORTHO05D007566 1.5e-112 409.8 245 76.3
CsaV3_7G024870 Cucumis sativus L. HOM05D006006 ORTHO05D007566 2.0e-112 409.5 242 76.9
FvH4_2g14460 Fragaria vesca HOM05D006006 ORTHO05D007566 2.5e-112 409.1 247 76.9
PSO675G8728 Papaver somniferum HOM05D006006 ORTHO05D007566 3.3e-112 408.7 245 75.9
FAN27G0920 Fragaria x ananassa HOM05D006006 ORTHO05D007566 4.3e-112 408.3 247 76.5
MD10G1017500 Malus domestica HOM05D006006 ORTHO05D007566 4.3e-112 408.3 245 77.1
Lj4A692T31 Lonicera japonica HOM05D006006 ORTHO05D007566 5.7e-112 407.9 248 74.6
FAN24G1565 Fragaria x ananassa HOM05D006006 ORTHO05D007566 7.4e-112 407.5 247 76.5
Cpa.g.sc49.54 Carica papaya HOM05D006006 ORTHO05D007566 9.7e-112 407.1 244 76.6
Sed0017044 Sechium edule HOM05D006006 ORTHO05D007566 1.3e-111 406.8 242 77.3
CiPaw.16G016900 Carya illinoinensis HOM05D006006 ORTHO05D007566 1.7e-111 406.4 247 76.9
arahy.Tifrunner.gnm1.ann1.D9Y8GI Arachis hypogaea HOM05D006006 ORTHO05D007566 2.2e-111 406.0 256 75.0
arahy.Tifrunner.gnm1.ann1.T5RWDG Arachis hypogaea HOM05D006006 ORTHO05D007566 2.2e-111 406.0 256 74.6
PSO541G2188 Papaver somniferum HOM05D006006 ORTHO05D007566 2.2e-111 406.0 245 75.5
CARHR021760 Cardamine hirsuta HOM05D006006 ORTHO05D007566 3.7e-111 405.2 247 75.3
Medtr1g029000 Medicago truncatula HOM05D006006 ORTHO05D007566 4.8e-111 404.8 245 75.1
Aa31LG7G5530 Aethionema arabicum HOM05D006006 ORTHO05D007566 6.3e-111 404.4 246 75.2
FAN15G3392 Fragaria x ananassa HOM05D006006 ORTHO05D007566 6.3e-111 404.4 247 75.7
Prupe.8G021400 Prunus persica HOM05D006006 ORTHO05D007566 6.3e-111 404.4 249 76.3
MBI03_g11319_MAGBIO Magnolia biondii HOM05D006006 ORTHO05D007566 8.2e-111 404.1 244 74.2
Oeu014478.2 Olea europaea HOM05D006006 ORTHO05D007566 8.2e-111 404.1 264 73.1
Psat0s5561g0040 Pisum sativum HOM05D006006 ORTHO05D007566 1.4e-110 403.3 245 75.5
Ah.01g005030 Amaranthus hybridus HOM05D006006 ORTHO05D007566 1.8e-110 402.9 244 76.6
BcaB07g32125 Brassica carinata HOM05D006006 ORTHO05D007566 1.8e-110 402.9 246 75.2
unitig_744.g24565 Utricularia gibba HOM05D006006 ORTHO05D007566 2.4e-110 402.5 251 72.5
RcHm_v2.0_Chr6g0276791 Rosa chinensis HOM05D006006 ORTHO05D007566 3.1e-110 402.1 249 75.1
unitig_21.g20180 Utricularia gibba HOM05D006006 ORTHO05D007566 9.1e-110 400.6 251 73.3
Haze_17707 Corylus avellana HOM05D006006 ORTHO05D007566 1.5e-109 399.8 275 70.5
CANSAT25G3881 Cannabis sativa HOM05D006006 ORTHO05D007566 2.0e-109 399.4 244 75.4
Os04g0438500 Oryza sativa ssp. japonica HOM05D006006 ORTHO05D007566 2.6e-109 399.1 244 74.2
MD05G1017500 Malus domestica HOM05D006006 ORTHO05D007566 3.4e-109 398.7 245 75.5
BcaB03g12819 Brassica carinata HOM05D006006 ORTHO05D007566 4.5e-109 398.3 247 73.3
BcaC05g26044 Brassica carinata HOM05D006006 ORTHO05D007566 5.9e-109 397.9 246 74.0
C05p20260 Brassica napus HOM05D006006 ORTHO05D007566 7.7e-109 397.5 246 74.0
BolC5t30719H Brassica oleracea HOM05D006006 ORTHO05D007566 7.7e-109 397.5 246 74.0
BraA06t24839Z Brassica rapa HOM05D006006 ORTHO05D007566 1.7e-108 396.4 246 73.6
A06p17420 Brassica napus HOM05D006006 ORTHO05D007566 3.8e-108 395.2 246 73.2
C08p20770 Brassica napus HOM05D006006 ORTHO05D007566 8.5e-108 394.0 249 73.1
EL10Ac9g20647 Beta vulgaris HOM05D006006 ORTHO05D007566 1.1e-107 393.7 245 74.3
Actinidia15154 Actinidia chinensis HOM05D006006 ORTHO05D007566 3.2e-107 392.1 227 79.3
FAN20G0686 Fragaria x ananassa HOM05D006006 ORTHO05D007566 1.2e-106 390.2 278 66.9
ATR1136G139 Amborella trichopoda HOM05D006006 ORTHO05D007566 2.7e-106 389.0 242 73.6
CDE08G1689 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 2.7e-106 389.0 247 70.9
VMungo0647G2124 Vigna mungo HOM05D006006 ORTHO05D007566 6.1e-106 387.9 227 79.7
CDE06G2625 Ceratophyllum demersum HOM05D006006 ORTHO05D007566 1.0e-105 387.1 243 71.6
MELO3C023695.2 Cucumis melo HOM05D006006 ORTHO05D007566 5.1e-105 384.8 305 61.6
Zm00001eb422860 Zea mays HOM05D006006 ORTHO05D007566 3.3e-104 382.1 246 71.1
SHI09110 Sapria himalayana HOM05D006006 ORTHO05D007566 5.7e-104 381.3 243 70.4
HPP92_004629 Vanilla planifolia HOM05D006006 ORTHO05D007566 1.2e-101 373.6 247 68.8
SEGI_37970 Sequoiadendron giganteum HOM05D006006 ORTHO05D007566 1.9e-99 366.3 245 69.4
BolC8t49716H Brassica oleracea HOM05D006006 ORTHO05D007566 2.6e-96 355.9 249 67.1
Mapoly0050s0105 Marchantia polymorpha HOM05D006006 ORTHO05D007566 4.4e-96 355.1 246 65.9
Pp3c25_12020 Physcomitrium patens HOM05D006006 ORTHO05D007566 7.7e-93 344.4 251 62.9
C06p40100 Brassica napus HOM05D006006 ORTHO05D007566 1.2e-88 330.5 232 66.4
Pp3c6_4630 Physcomitrium patens HOM05D006006 ORTHO05D007566 8.3e-87 324.3 251 59.8
SMO228G0011 Selaginella moellendorffii HOM05D006006 ORTHO05D007566 1.8e-86 323.2 243 60.9
BcaC07g39093 Brassica carinata HOM05D006006 ORTHO05D007566 5.5e-83 311.6 249 62.2
Dinv25817 Davidia involucrata HOM05D006006 ORTHO05D007566 1.8e-73 280.0 162 81.5
AagrBONN_evm.TU.Sc2ySwM_344.2333 Anthoceros agrestis HOM05D006006 ORTHO05D007566 1.5e-67 260.4 173 71.1
Nitab4.5_0008475g0010 Nicotiana tabacum HOM05D006006 ORTHO05D007566 1.8e-65 253.4 152 79.6
Gohir.A02G108508 Gossypium hirsutum HOM05D006006 ORTHO05D007566 5.2e-65 251.9 153 77.8
Gohir.A02G108509 Gossypium hirsutum HOM05D006006 ORTHO05D007566 5.2e-65 251.9 153 77.8
Sc02g0004370 Simmondsia chinensis HOM05D006006 ORTHO05D007566 2.0e-64 250.0 139 82.7
MCO04G174 Micromonas commoda HOM05D006006 ORTHO05D007566 2.2e-63 246.5 244 48.8
SGA_v2.0_scaffold25G11170 Striga asiatica HOM05D006006 ORTHO05D007566 2.0e-61 240.0 139 79.9
PRCOL_00006391 Prasinoderma coloniale HOM05D006006 ORTHO05D007566 1.2e-56 224.2 189 54.5
TAR625G0955 Trochodendron aralioides HOM05D006006 ORTHO05D007566 7.5e-56 221.5 163 63.2
Cre02.g116000 Chlamydomonas reinhardtii HOM05D006006 ORTHO05D007566 7.3e-51 204.9 180 55.0
Pp3c5_24650 Physcomitrium patens HOM05D006006 ORTHO05D007566 2.0e-48 196.8 167 59.9
AUR62025132 Chenopodium quinoa HOM05D006006 ORTHO05D007566 8.9e-41 171.4 99 79.8
AUR62037127 Chenopodium quinoa HOM05D006006 ORTHO05D007566 4.4e-40 169.1 97 79.4
SGA_v2.0_scaffold35G14089 Striga asiatica HOM05D006006 ORTHO05D007566 6.6e-28 128.6 79 73.4
Ah.02g110550 Amaranthus hybridus HOM05D006006 ORTHO05D007566 3.1e-25 119.8 73 75.3
CDE04G1521 Ceratophyllum demersum HOM05D000566 ORTHO05D000686 2.5e-14 83.6 57 61.4
Pp3c16_22840 Physcomitrium patens HOM05D006006 ORTHO05D318415 3.1e-09 66.6 53 58.5


User provided reference genes

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