Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 5.7e-122 441.0 239 100.0
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 5.3e-112 407.9 240 92.9
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 1.3e-110 403.3 240 91.7
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 1.7e-102 376.3 282 77.0
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 6.1e-100 367.9 239 82.0
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 3.3e-98 362.1 238 82.4
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 1.8e-96 356.3 239 80.3
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 7.7e-95 350.9 238 79.4
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 7.7e-95 350.9 238 79.0
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 1.0e-94 350.5 237 79.7
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 6.5e-94 347.8 240 78.8
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 6.5e-94 347.8 238 79.0
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 6.5e-94 347.8 239 77.8
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 8.5e-94 347.4 238 78.6
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.5e-93 346.7 238 79.4
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 5.5e-93 344.7 238 78.2
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 9.4e-93 344.0 238 78.6
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.6e-92 343.2 238 77.7
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.7e-92 342.4 238 78.2
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 4.7e-92 341.7 238 76.9
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 6.1e-92 341.3 237 78.1
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.0e-91 340.5 239 77.8
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 1.4e-91 340.1 238 77.7
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 3.0e-91 339.0 238 78.6
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 3.0e-91 339.0 237 76.4
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.0e-91 339.0 241 79.3
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 5.2e-91 338.2 239 77.8
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 6.8e-91 337.8 237 75.9
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 8.8e-91 337.4 238 77.7
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 1.5e-90 336.7 235 77.9
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.5e-90 336.7 238 76.5
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 5.7e-90 334.7 238 76.9
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 9.8e-90 334.0 238 76.1
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 9.8e-90 334.0 238 76.5
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 1.3e-89 333.6 239 76.6
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 2.2e-89 332.8 239 76.2
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 2.2e-89 332.8 237 77.2
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 3.7e-89 332.0 238 75.6
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 3.7e-89 332.0 241 75.1
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 8.3e-89 330.9 238 76.5
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 1.1e-88 330.5 228 78.1
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 2.4e-88 329.3 238 75.2
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.4e-88 329.3 231 76.2
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 2.4e-88 329.3 239 76.6
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 3.1e-88 328.9 238 76.1
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 5.4e-88 328.2 238 75.2
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.2e-87 327.0 231 76.2
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 1.2e-87 327.0 239 76.6
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 2.7e-87 325.9 238 76.1
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 2.7e-87 325.9 238 73.1
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 1.0e-86 323.9 238 75.2
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 2.9e-86 322.4 231 75.3
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 5.0e-86 321.6 239 74.5
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 1.1e-85 320.5 279 66.7
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 1.9e-85 319.7 240 72.5
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 4.2e-85 318.5 228 74.1
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 4.2e-85 318.5 239 75.3
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 7.2e-85 317.8 217 78.3
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.6e-84 316.6 237 73.0
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 1.6e-84 316.6 240 72.5
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 2.8e-84 315.8 238 71.8
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 3.6e-84 315.5 238 72.3
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 6.1e-84 314.7 232 72.8
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 8.0e-84 314.3 238 71.4
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 1.0e-83 313.9 238 70.2
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 1.0e-83 313.9 240 71.2
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 1.4e-83 313.5 238 71.4
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 1.4e-83 313.5 238 71.4
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 1.8e-83 313.2 238 71.4
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 2.3e-83 312.8 238 70.6
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 2.3e-83 312.8 240 72.9
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 3.0e-83 312.4 240 71.2
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 3.0e-83 312.4 239 71.5
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 8.9e-83 310.8 238 71.0
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 8.9e-83 310.8 196 85.2
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.5e-82 310.1 197 84.8
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 2.0e-82 309.7 239 71.1
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.6e-82 309.3 238 70.2
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 3.4e-82 308.9 242 69.4
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.4e-82 308.9 238 73.1
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 5.7e-82 308.1 238 72.3
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 9.8e-82 307.4 238 69.3
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 9.8e-82 307.4 218 78.0
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 9.8e-82 307.4 239 69.9
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.2e-81 306.2 240 70.8
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.2e-81 306.2 238 69.7
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 2.8e-81 305.8 238 69.3
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 2.8e-81 305.8 198 80.8
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 6.3e-81 304.7 239 70.3
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 6.3e-81 304.7 239 70.3
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 8.3e-81 304.3 239 69.9
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 1.1e-80 303.9 238 68.9
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 1.1e-80 303.9 238 69.3
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 1.8e-80 303.1 239 70.7
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 1.8e-80 303.1 217 76.5
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 1.8e-80 303.1 196 82.1
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 1.8e-80 303.1 287 63.1
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 9.2e-80 300.8 239 68.6
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 9.2e-80 300.8 239 70.3
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.2e-79 300.4 220 72.3
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 1.2e-79 300.4 239 70.3
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 3.5e-79 298.9 239 69.5
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 4.5e-79 298.5 240 70.0
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 4.5e-79 298.5 239 69.0
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 5.9e-79 298.1 219 75.3
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 7.8e-79 297.7 286 61.2
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 1.0e-78 297.4 238 67.2
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 2.3e-78 296.2 254 67.7
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 5.0e-78 295.0 254 67.3
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 5.0e-78 295.0 196 80.6
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 1.9e-77 293.1 196 81.1
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 3.3e-77 292.4 241 69.3
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 4.3e-77 292.0 196 79.1
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 9.5e-77 290.8 240 67.5
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 6.1e-76 288.1 239 65.3
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 6.1e-76 288.1 228 68.0
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.0e-75 287.3 196 78.1
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.0e-75 287.3 199 78.4
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.4e-75 287.0 199 77.9
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.3e-75 286.2 199 77.4
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.2e-74 283.9 199 77.4
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 2.6e-74 282.7 243 66.3
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 1.3e-73 280.4 244 66.8
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 1.4e-72 276.9 241 63.9
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 5.4e-72 275.0 241 63.1
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 6.6e-70 268.1 203 72.4
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 1.5e-69 266.9 196 71.9
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 4.4e-66 255.4 216 66.2
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 3.2e-64 249.2 175 76.0
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 1.6e-63 246.9 177 72.9
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 6.2e-60 235.0 188 66.0
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 8.9e-59 231.1 196 68.4
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 6.4e-57 224.9 240 55.8
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 1.9e-53 213.4 155 76.8
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 4.0e-51 205.7 135 78.5
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 9.2e-48 194.5 220 54.1
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 6.6e-46 188.3 155 65.2
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.5e-37 160.6 169 57.4
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 9.6e-37 157.9 149 63.1
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 4.0e-35 152.5 112 73.2
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 1.4e-32 144.1 127 60.6
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.6e-31 139.0 210 47.1
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 1.1e-29 134.4 219 39.7
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 2.2e-25 120.2 131 57.3
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.9e-25 119.8 236 41.5
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 4.9e-25 119.0 206 35.4
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 1.2e-23 114.4 209 35.4
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 1.3e-22 110.9 96 63.5
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 1.5e-21 107.5 193 35.8
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 2.5e-21 106.7 178 36.5
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 2.6e-18 96.7 68 73.5
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 2.9e-17 93.2 63 81.0
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.9e-16 90.5 178 42.1
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 1.1e-13 81.3 85 55.3
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 4.1e-11 72.8 64 65.6
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 7.9e-07 58.5 41 80.5
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 1.0e-06 58.2 40 82.5
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 1.4e-06 57.8 214 27.6


User provided reference genes

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