Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 8.0e-222 773.5 397 100.0
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 1.1e-173 613.6 396 83.1
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 2.9e-171 605.5 397 81.6
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 4.8e-150 535.0 388 74.5
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 1.3e-147 526.9 365 77.5
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 3.2e-146 522.3 396 72.0
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 4.2e-146 521.9 395 71.9
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 4.2e-146 521.9 387 72.6
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 4.6e-145 518.5 390 72.1
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 1.4e-144 516.9 363 76.0
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 1.8e-144 516.5 387 72.1
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 3.0e-144 515.8 364 75.5
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 3.0e-144 515.8 399 70.7
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 1.1e-143 513.8 390 72.1
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 2.0e-143 513.1 396 71.5
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 2.5e-143 512.7 383 72.6
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 4.3e-143 511.9 394 71.6
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 1.3e-142 510.4 398 69.6
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 1.3e-142 510.4 330 81.8
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 2.2e-142 509.6 391 71.9
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 8.2e-142 507.7 363 73.6
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 8.2e-142 507.7 358 75.1
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 1.1e-141 507.3 406 69.2
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 1.4e-141 506.9 390 71.5
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 4.1e-141 505.4 364 73.4
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 5.3e-141 505.0 398 70.1
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 6.9e-141 504.6 359 73.8
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 6.9e-141 504.6 365 73.4
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 9.1e-141 504.2 359 73.8
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 1.2e-140 503.8 396 69.9
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 1.2e-140 503.8 359 73.3
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 1.2e-140 503.8 359 73.0
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 1.5e-140 503.4 396 69.9
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 2.0e-140 503.1 390 71.5
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 5.9e-140 501.5 353 75.9
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 7.7e-140 501.1 437 65.4
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 1.7e-139 500.0 386 69.9
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 1.7e-139 500.0 363 73.8
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 2.2e-139 499.6 376 71.0
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 2.2e-139 499.6 391 70.3
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 3.8e-139 498.8 380 70.3
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 3.8e-139 498.8 401 69.3
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 5.0e-139 498.4 374 71.1
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 5.0e-139 498.4 396 70.2
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 8.5e-139 497.7 374 71.1
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 8.5e-139 497.7 374 71.1
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 2.5e-138 496.1 389 69.4
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 2.5e-138 496.1 361 73.7
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 2.5e-138 496.1 365 72.9
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 2.5e-138 496.1 389 69.2
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 4.2e-138 495.4 374 71.1
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 1.6e-137 493.4 369 72.4
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 1.6e-137 493.4 398 68.1
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 3.6e-137 492.3 424 64.9
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 3.6e-137 492.3 368 72.8
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 6.1e-137 491.5 396 68.4
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 7.9e-137 491.1 360 72.2
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 3.9e-136 488.8 409 66.7
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 6.7e-136 488.0 352 72.7
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 4.4e-135 485.3 352 74.4
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 5.7e-135 485.0 314 79.0
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 5.3e-133 478.4 359 72.7
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 1.2e-132 477.2 366 70.5
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 1.5e-132 476.9 398 67.8
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 2.0e-132 476.5 386 68.4
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 5.9e-132 474.9 354 71.8
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 1.0e-131 474.2 387 68.7
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 2.9e-131 472.6 387 68.5
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 3.8e-131 472.2 391 67.5
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 3.8e-131 472.2 391 67.5
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 5.0e-131 471.9 399 66.4
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 3.2e-130 469.2 366 71.6
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 4.2e-130 468.8 382 68.6
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 4.2e-130 468.8 340 73.8
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 7.2e-130 468.0 415 65.5
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 6.1e-129 464.9 396 66.4
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 2.3e-128 463.0 391 66.2
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 3.0e-128 462.6 377 65.8
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 6.7e-128 461.5 390 67.4
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 1.1e-127 460.7 376 69.4
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 7.4e-127 458.0 353 69.7
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 7.4e-127 458.0 353 69.7
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 1.7e-126 456.8 353 68.3
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 2.2e-126 456.4 380 67.4
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 2.2e-126 456.4 371 67.9
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 3.7e-126 455.7 323 71.5
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 3.1e-125 452.6 295 80.3
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 1.7e-123 446.8 319 73.0
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 1.9e-122 443.4 335 70.7
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 3.7e-118 429.1 452 58.2
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 2.1e-113 413.3 302 74.8
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 3.6e-113 412.5 334 66.8
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 3.7e-110 402.5 290 71.0
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 5.0e-107 392.1 360 60.3
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 1.9e-106 390.2 328 64.0
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 6.8e-96 355.1 239 76.2
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 4.4e-79 299.3 337 48.1
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 2.2e-78 297.0 200 77.0
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 2.4e-77 293.5 314 51.6
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 5.4e-77 292.4 317 49.2
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 7.8e-76 288.5 285 57.9
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 8.6e-75 285.0 210 71.0
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 1.2e-73 281.2 395 46.1
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 4.9e-70 269.2 313 55.3
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 1.0e-67 261.5 260 52.3
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 2.5e-66 256.9 300 54.0
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 2.8e-65 253.4 908 28.3
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 1.8e-64 250.8 281 52.7
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 5.1e-59 232.6 157 73.9
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 7.4e-50 202.2 143 72.7
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 1.9e-45 187.6 157 66.9
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 5.5e-37 159.5 124 67.7
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 1.8e-35 154.5 119 73.1
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 7.4e-34 149.1 177 50.3
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 2.2e-33 147.5 327 34.6
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 5.9e-23 112.8 82 72.0
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 5.9e-15 86.3 286 30.4
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 5.9e-15 86.3 254 29.1
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 3.8e-14 83.6 46 87.0
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 1.9e-13 81.3 79 57.0
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 8.8e-11 72.4 80 52.5
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 3.7e-09 67.0 47 66.0
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 5.0e-06 56.6 73 49.3


User provided reference genes

Program Settings