Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.1e-130 469.9 236 100.0
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 2.2e-94 349.4 184 94.6
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 1.0e-86 323.9 184 85.3
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 5.0e-86 321.6 185 83.8
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 3.2e-85 318.9 184 84.8
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 5.5e-85 318.2 186 83.9
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 4.3e-74 282.0 185 73.0
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 6.5e-70 268.1 185 69.7
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.5e-69 266.2 184 69.0
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 4.2e-69 265.4 184 71.2
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 3.6e-68 262.3 185 68.6
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 2.6e-66 256.1 191 66.0
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 3.3e-66 255.8 185 68.1
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 5.7e-66 255.0 187 65.8
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 7.4e-66 254.6 187 66.3
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 1.3e-65 253.8 187 65.8
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 1.1e-64 250.8 186 67.2
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 1.1e-64 250.8 186 67.7
CAN.G1489.22 Capsicum annuum HOM05D005619 ORTHO05D006696 1.4e-64 250.4 187 65.2
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 9.1e-64 247.7 186 66.7
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 9.1e-64 247.7 186 66.1
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 1.7e-62 243.4 187 64.2
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 3.8e-62 242.3 182 65.9
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 8.5e-62 241.1 183 63.9
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 1.5e-61 240.4 182 65.4
Prupe.2G202300 Prunus persica HOM05D005619 ORTHO05D006696 7.2e-61 238.0 182 64.3
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 1.2e-60 237.3 183 62.3
Prupe.2G249700 Prunus persica HOM05D005619 ORTHO05D006696 1.6e-60 236.9 184 63.6
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 1.6e-60 236.9 184 64.7
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 4.7e-60 235.3 184 63.0
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 6.1e-60 235.0 182 67.0
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 8.0e-60 234.6 183 65.6
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 8.0e-60 234.6 185 62.2
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 8.0e-60 234.6 184 63.0
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.0e-59 234.2 182 63.2
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.0e-59 234.2 182 63.2
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 1.0e-59 234.2 182 63.7
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 1.8e-59 233.4 182 63.2
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 2.3e-59 233.0 182 62.6
Nitab4.5_0000350g0020 Nicotiana tabacum HOM05D005619 ORTHO05D006696 6.7e-59 231.5 186 63.4
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 6.7e-59 231.5 183 63.9
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 8.8e-59 231.1 184 62.5
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 1.5e-58 230.3 187 63.1
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 2.0e-58 229.9 182 65.4
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 2.0e-58 229.9 184 62.5
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 2.6e-58 229.6 184 61.4
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 3.3e-58 229.2 183 60.7
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 3.3e-58 229.2 184 61.4
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 7.5e-58 228.0 183 62.8
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 9.7e-58 227.6 184 61.4
Lj6g0025019 Lotus japonicus HOM05D005619 ORTHO05D006696 9.7e-58 227.6 182 60.4
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 1.3e-57 227.3 182 61.0
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.3e-57 227.3 182 62.1
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 1.3e-57 227.3 182 62.6
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.7e-57 226.9 182 63.2
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.7e-57 226.9 182 63.2
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 1.7e-57 226.9 182 63.2
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 1.7e-57 226.9 184 59.8
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 2.8e-57 226.1 182 59.3
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 2.8e-57 226.1 183 59.6
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 3.7e-57 225.7 184 62.0
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 4.8e-57 225.3 184 60.9
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 4.8e-57 225.3 185 60.0
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 1.1e-56 224.2 184 62.0
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.4e-56 223.8 182 59.3
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.4e-56 223.8 182 59.3
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 2.4e-56 223.0 182 58.8
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 2.4e-56 223.0 182 61.0
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 3.1e-56 222.6 183 58.5
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 4.1e-56 222.2 184 61.4
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 5.3e-56 221.9 182 58.8
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 7.0e-56 221.5 182 59.3
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 1.6e-55 220.3 182 57.7
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 1.6e-55 220.3 189 58.7
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 2.6e-55 219.5 182 58.2
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 4.5e-55 218.8 182 57.1
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 5.9e-55 218.4 182 57.7
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 7.7e-55 218.0 182 59.9
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.9e-54 216.1 182 58.8
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 3.8e-54 215.7 220 51.4
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 5.0e-54 215.3 182 58.2
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 8.5e-54 214.5 169 60.4
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 8.5e-54 214.5 182 59.9
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 3.2e-53 212.6 182 57.1
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 3.2e-53 212.6 181 56.4
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 7.2e-53 211.5 175 61.1
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 7.2e-53 211.5 180 58.9
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 7.2e-53 211.5 207 53.6
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 1.2e-52 210.7 182 58.8
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 1.2e-52 210.7 200 56.5
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 2.7e-52 209.5 184 57.1
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 3.6e-52 209.1 150 68.0
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 4.7e-52 208.8 182 58.2
Peaxi162Scf00205g01136 Petunia axillaris HOM05D005619 ORTHO05D006696 4.7e-52 208.8 148 68.2
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 8.0e-52 208.0 182 58.2
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.0e-51 207.6 178 59.6
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.0e-51 207.6 182 54.9
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 1.4e-51 207.2 182 56.6
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.8e-51 206.8 182 58.2
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 3.0e-51 206.1 187 54.5
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 4.0e-51 205.7 179 57.0
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 3.4e-50 202.6 180 56.1
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 9.8e-50 201.1 184 57.6
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 2.2e-49 199.9 167 60.5
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 3.7e-49 199.1 181 55.2
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 4.8e-49 198.7 180 55.6
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 8.3e-49 198.0 184 53.8
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 1.8e-48 196.8 184 53.3
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 5.4e-48 195.3 185 55.7
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 1.2e-47 194.1 184 53.3
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 2.0e-47 193.4 184 53.3
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 2.7e-47 193.0 204 51.0
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 7.7e-47 191.4 149 65.1
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 1.3e-46 190.7 165 58.8
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 5.5e-45 185.3 196 55.1
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 6.1e-44 181.8 165 56.4
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 2.3e-43 179.9 147 59.2
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 1.5e-42 177.2 190 46.8
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 2.7e-39 166.4 183 47.0
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 4.5e-39 165.6 183 46.4
TWI73G0774 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 1.3e-38 164.1 183 49.2
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 2.9e-38 162.9 183 51.9
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 1.9e-37 160.2 183 47.0
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.5e-34 150.6 147 53.7
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.6e-34 149.8 183 43.2
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 3.4e-34 149.4 185 40.0
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 2.4e-32 143.3 151 51.7
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.2e-25 120.2 112 51.8
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 2.9e-25 119.8 121 53.7
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 8.3e-25 118.2 103 55.3
Actinidia33632 Actinidia chinensis HOM05D005619 ORTHO05D006696 2.4e-24 116.7 99 57.6
HanXRQChr01g0017101 Helianthus annuus HOM05D005619 ORTHO05D006696 6.0e-23 112.1 65 76.9
HanXRQChr12g0375531 Helianthus annuus HOM05D005619 ORTHO05D006696 1.3e-22 110.9 72 69.4
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 1.2e-18 97.8 158 37.3
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 5.8e-18 95.5 104 45.2
C04p07380 Brassica napus HOM05D005619 ORTHO05D006696 5.8e-18 95.5 80 58.8
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 1.7e-17 94.0 167 31.1
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 1.6e-15 87.4 186 30.6
Thecc.10G017600 Theobroma cacao HOM05D009631 ORTHO05D011824 1.0e-14 84.7 80 58.8
BcaB08g35316 Brassica carinata HOM05D005619 ORTHO05D006696 2.3e-14 83.6 71 53.5
Cfa027228 Carpinus fangiana HOM05D005619 ORTHO05D006696 5.6e-13 79.0 174 28.7


User provided reference genes

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