Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 5.4e-184 647.5 324 100.0
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 9.6e-173 610.1 322 92.5
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 3.8e-169 598.2 323 91.6
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 6.0e-151 537.7 313 86.3
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 3.8e-137 491.9 321 72.9
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.4e-134 483.4 321 70.1
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 1.5e-133 479.9 321 70.7
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 2.5e-133 479.2 321 71.3
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 1.4e-131 473.4 321 69.2
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 4.1e-131 471.9 321 68.5
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 4.1e-131 471.9 320 71.2
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 3.4e-130 468.8 323 68.4
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 7.7e-130 467.6 323 69.3
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.0e-129 467.2 324 68.8
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 1.3e-129 466.8 321 70.4
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 2.9e-129 465.7 320 68.8
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 5.0e-129 464.9 323 67.5
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 6.5e-129 464.5 322 70.5
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 6.5e-129 464.5 323 69.7
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 6.5e-129 464.5 323 67.5
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.4e-128 463.4 319 69.0
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 3.2e-128 462.2 333 68.2
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 4.2e-128 461.8 321 68.8
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 5.5e-128 461.5 321 69.5
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 1.6e-127 459.9 320 67.8
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.6e-127 459.9 320 67.5
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 1.6e-127 459.9 321 69.8
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 2.7e-127 459.1 321 68.5
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 2.7e-127 459.1 321 68.2
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 6.1e-127 458.0 323 67.2
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 7.9e-127 457.6 321 69.2
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 1.4e-126 456.8 323 67.8
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 1.8e-126 456.4 321 69.2
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 2.3e-126 456.1 322 68.3
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 3.0e-126 455.7 323 68.4
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.4e-125 451.8 321 68.5
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 5.7e-125 451.4 320 66.2
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 5.7e-125 451.4 321 66.4
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 7.4e-125 451.1 326 66.3
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 9.7e-125 450.7 318 67.9
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 9.7e-125 450.7 321 67.3
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 2.8e-124 449.1 323 67.2
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 2.8e-124 449.1 320 67.8
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 4.8e-124 448.4 321 67.3
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 4.8e-124 448.4 322 67.1
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 1.1e-123 447.2 323 67.8
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 4.1e-123 445.3 322 65.8
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 5.3e-123 444.9 321 67.0
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 9.1e-123 444.1 321 67.3
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.2e-122 443.7 323 65.6
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 1.2e-122 443.7 323 65.6
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 2.6e-122 442.6 318 67.0
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 4.5e-122 441.8 318 65.4
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 5.9e-122 441.4 323 65.3
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.9e-122 441.4 323 65.3
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.9e-122 441.4 321 64.8
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 2.2e-121 439.5 321 64.8
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 2.9e-121 439.1 320 66.6
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 2.9e-121 439.1 321 67.6
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 3.8e-121 438.7 321 66.0
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 5.0e-121 438.3 321 64.2
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 6.5e-121 438.0 321 65.7
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 1.4e-120 436.8 321 65.4
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 1.4e-120 436.8 321 67.0
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 4.2e-120 435.3 320 66.2
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 2.7e-119 432.6 321 64.8
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 3.6e-119 432.2 321 64.2
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 4.7e-119 431.8 319 63.9
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 1.8e-118 429.9 321 63.9
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 2.3e-118 429.5 321 65.1
Peaxi162Scf01205g00165 Petunia axillaris HOM05D004699 ORTHO05D005668 1.1e-117 427.2 327 64.2
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 1.5e-117 426.8 321 64.5
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 2.6e-117 426.0 321 64.5
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 3.3e-117 425.6 325 65.5
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 4.4e-117 425.2 321 64.2
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 4.4e-117 425.2 323 65.0
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 5.7e-117 424.9 321 62.9
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 2.2e-116 422.9 320 63.4
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 3.7e-116 422.2 325 64.9
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.1e-115 420.6 321 63.9
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 4.1e-115 418.7 368 59.0
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.6e-114 416.8 321 62.9
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.0e-113 414.1 322 62.4
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 1.0e-113 414.1 323 61.6
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.0e-113 414.1 322 62.7
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 1.3e-113 413.7 317 63.7
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 1.7e-113 413.3 322 61.5
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 2.2e-113 412.9 322 62.1
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 3.8e-113 412.1 323 61.3
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 1.5e-112 410.2 322 61.2
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 2.5e-112 409.5 322 60.9
Aa31LG1G18760 Aethionema arabicum HOM05D004699 ORTHO05D005668 7.2e-112 407.9 322 61.8
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.2e-111 407.1 305 63.9
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 1.6e-111 406.8 307 63.8
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 6.1e-111 404.8 322 60.9
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 8.8e-110 401.0 322 60.2
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 1.2e-109 400.6 308 63.6
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 1.2e-109 400.6 322 60.2
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 1.2e-109 400.6 323 60.1
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 1.7e-108 396.7 322 59.9
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 4.8e-108 395.2 323 59.8
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 2.4e-107 392.9 415 52.3
Sp2g26340 Schrenkiella parvula HOM05D004699 ORTHO05D005668 4.1e-107 392.1 322 58.7
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 1.2e-106 390.6 265 72.1
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 2.7e-106 389.4 321 60.1
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 4.2e-104 382.1 278 66.9
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 2.1e-103 379.8 321 60.1
Dinv31344 Davidia involucrata HOM05D004699 ORTHO05D005668 3.0e-102 375.9 255 70.6
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 1.5e-101 373.6 539 41.0
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 9.8e-101 370.9 286 63.6
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 1.3e-100 370.5 323 56.7
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 1.8e-99 366.7 323 56.3
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.2e-98 364.0 371 52.6
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.8e-95 352.8 323 55.1
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.8e-92 342.8 323 54.2
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 1.8e-91 340.1 321 55.1
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 1.5e-88 330.5 277 61.0
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 2.5e-88 329.7 287 57.8
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.6e-87 327.0 321 53.3
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 2.2e-84 316.6 307 51.8
Lj8C95T3 Lonicera japonica HOM05D004699 ORTHO05D005668 4.1e-83 312.4 230 64.3
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 5.4e-83 312.0 682 32.0
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 1.2e-82 310.8 265 58.9
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 6.0e-82 308.5 311 48.2
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 4.3e-80 302.4 311 47.3
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 9.5e-80 301.2 221 66.1
CSS0008535 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 5.8e-77 292.0 201 68.7
Hund22480 Selenicereus undatus HOM05D004699 ORTHO05D005668 2.4e-75 286.6 256 56.2
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 1.2e-69 267.7 180 71.1
Zm00001eb336250 Zea mays HOM05D004699 ORTHO05D005668 1.7e-68 263.8 222 58.1
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 1.1e-67 261.2 308 43.8
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 2.1e-55 220.3 294 40.5
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 7.1e-43 178.7 190 48.4
Hma1.2p1_0904F.1_g235240 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 7.6e-29 132.1 75 77.3
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 1.7e-28 131.0 95 65.3
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 1.9e-27 127.5 114 53.5
Hma1.2p1_0904F.1_g235250 Hydrangea macrophylla HOM05D004699 ORTHO05D005668 3.2e-27 126.7 86 67.4
Oeu050294.2 Olea europaea HOM05D004699 ORTHO05D005668 9.3e-27 125.2 121 52.1
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 2.7e-26 123.6 326 28.2
Gohir.D05G316201 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.1e-25 119.4 95 57.9
Gorai.009G338200 Gossypium raimondii HOM05D004699 ORTHO05D005668 8.7e-25 118.6 95 57.9
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 9.7e-24 115.2 114 50.9
CAN.G95.7 Capsicum annuum HOM05D004699 ORTHO05D005668 3.9e-17 93.2 70 61.4
SEGI_20090 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.0e-16 90.9 82 56.1
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 2.2e-12 77.4 60 60.0
CANSAT56G0323 Cannabis sativa HOM05D004699 ORTHO05D033952 1.1e-08 65.1 41 73.2
CANSAT56G0634 Cannabis sativa HOM05D004699 ORTHO05D033952 1.1e-08 65.1 41 73.2
CANSAT56G3585 Cannabis sativa HOM05D004699 ORTHO05D033952 1.1e-08 65.1 41 73.2
SEGI_31020 Sequoiadendron giganteum HOM05D004699 ORTHO05D005668 2.8e-07 60.5 52 53.8
Gohir.A02G086400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 3.7e-07 60.1 42 66.7
CsaV3_6G007970 Cucumis sativus L. HOM05D008150 ORTHO05D010312 4.8e-07 59.7 102 41.2
RcHm_v2.0_Chr7g0225301 Rosa chinensis HOM05D004699 ORTHO05D005668 3.1e-06 57.0 50 54.0


User provided reference genes

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