Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.3e-177 626.3 327 100.0
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.6e-95 353.6 325 61.5
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.1e-91 340.9 325 57.8
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 1.0e-89 334.3 327 59.0
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.4e-86 323.9 326 57.1
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 5.8e-85 318.5 330 55.5
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 7.6e-85 318.2 326 55.8
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.4e-83 313.9 328 55.8
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 9.3e-83 311.2 325 56.6
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 6.0e-82 308.5 325 56.9
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 3.0e-81 306.2 326 54.6
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 3.9e-81 305.8 326 54.3
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 6.6e-81 305.1 325 54.8
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 5.6e-80 302.0 325 54.5
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 7.3e-80 301.6 326 53.7
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 4.8e-79 298.9 325 54.2
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 3.4e-77 292.7 326 53.4
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 3.4e-77 292.7 326 52.1
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.9e-75 287.0 326 51.5
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 4.2e-75 285.8 326 51.8
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.6e-74 283.9 326 51.8
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 2.7e-74 283.1 326 52.8
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 3.5e-74 282.7 326 50.0
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 1.0e-73 281.2 378 46.0
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 1.3e-73 280.8 323 51.4
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 3.0e-73 279.6 326 50.0
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 3.9e-73 279.3 328 52.7
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 3.9e-73 279.3 327 51.4
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 6.7e-73 278.5 326 51.2
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 5.6e-72 275.4 326 50.0
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 9.6e-72 274.6 326 50.6
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.3e-71 274.2 326 50.0
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.6e-71 273.9 326 50.0
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.1e-71 273.5 326 50.0
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 4.8e-71 272.3 325 49.2
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.4e-70 270.0 326 50.9
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 4.0e-70 269.2 326 49.1
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 2.6e-69 266.5 326 50.0
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 3.8e-68 262.7 326 49.1
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 3.8e-68 262.7 386 43.8
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.1e-67 261.2 326 46.6
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 2.5e-67 260.0 327 49.5
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 5.5e-67 258.8 333 47.7
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 7.1e-67 258.5 326 48.8
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 1.6e-66 257.3 326 48.2
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 8.7e-65 251.5 326 47.9
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 4.3e-64 249.2 325 47.7
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 4.3e-64 249.2 325 47.7
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 5.7e-64 248.8 330 47.6
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 1.6e-63 247.3 326 47.5
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 2.1e-63 246.9 326 46.9
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 6.2e-63 245.4 386 42.0
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 2.4e-62 243.4 326 44.5
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 9.0e-62 241.5 333 47.1
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 1.2e-61 241.1 330 43.6
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 4.5e-61 239.2 326 46.9
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 7.6e-61 238.4 325 46.8
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 2.2e-60 236.9 326 44.8
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 6.5e-60 235.3 400 41.0
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.9e-59 233.8 326 42.9
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 4.2e-59 232.6 330 45.8
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 7.1e-59 231.9 325 46.8
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 9.3e-59 231.5 325 46.8
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 1.2e-58 231.1 327 45.9
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.2e-58 231.1 263 53.2
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 2.7e-58 229.9 326 44.2
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 3.5e-58 229.6 326 42.3
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 4.6e-58 229.2 330 46.1
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 4.6e-58 229.2 328 42.7
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 7.9e-58 228.4 330 45.8
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 1.0e-57 228.0 325 45.5
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.1e-56 224.6 325 42.2
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 1.5e-56 224.2 325 41.5
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.9e-56 223.8 280 45.0
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 5.7e-56 222.2 326 43.3
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 7.4e-56 221.9 333 44.7
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 9.7e-56 221.5 290 44.5
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 2.2e-55 220.3 330 42.1
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 2.2e-55 220.3 326 41.1
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 2.8e-55 219.9 210 54.8
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 4.8e-55 219.2 304 45.1
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 8.2e-55 218.4 327 44.0
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 8.2e-55 218.4 325 44.3
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 2.4e-54 216.9 323 44.3
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.2e-53 214.5 270 43.7
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 1.2e-53 214.5 332 42.8
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.5e-53 214.2 385 38.4
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 1.5e-53 214.2 326 42.3
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 3.4e-53 213.0 279 43.4
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 4.5e-53 212.6 297 42.8
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 4.5e-53 212.6 327 41.3
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.3e-52 211.1 327 41.3
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 5.0e-52 209.1 324 42.0
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 6.5e-52 208.8 326 41.4
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 1.4e-51 207.6 340 42.1
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 7.2e-51 205.3 326 40.2
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 6.1e-50 202.2 325 40.0
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 3.9e-49 199.5 330 40.3
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 1.5e-48 197.6 327 42.5
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.8e-46 190.7 327 40.4
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 1.8e-46 190.7 375 37.1
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.4e-46 190.3 315 39.7
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 4.1e-46 189.5 359 36.8
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 4.5e-45 186.0 312 39.4
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.2e-44 183.7 324 38.3
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 3.8e-44 183.0 311 37.0
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 3.8e-44 183.0 300 38.3
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 5.0e-44 182.6 324 39.5
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.4e-43 181.0 275 43.3
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.4e-43 181.0 292 37.3
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.4e-41 174.5 324 37.7
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 1.4e-41 174.5 305 37.4
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 2.3e-41 173.7 278 42.1
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 3.0e-41 173.3 329 37.4
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 6.7e-41 172.2 279 41.9
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 1.1e-40 171.4 301 35.9
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.5e-40 171.0 330 37.3
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 5.7e-40 169.1 197 47.7
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 9.7e-40 168.3 259 41.3
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.7e-39 167.5 382 32.7
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 2.2e-39 167.2 301 35.9
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-38 164.5 328 35.7
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 4.1e-38 162.9 361 35.2
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 1.2e-37 161.4 301 35.5
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.5e-37 161.0 258 39.9
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 2.6e-37 160.2 310 35.2
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.6e-37 160.2 312 35.9
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 4.5e-37 159.5 300 35.0
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 2.9e-36 156.8 321 37.7
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 5.0e-36 156.0 311 36.0
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 5.0e-36 156.0 311 36.0
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 7.2e-35 152.1 346 35.3
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 1.8e-33 147.5 326 35.6
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 8.8e-33 145.2 147 53.1
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.0e-32 144.1 361 29.9
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.0e-32 144.1 272 39.0
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 2.6e-32 143.7 161 49.7
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.3e-31 141.4 181 50.3
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 2.8e-31 140.2 156 50.0
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.8e-30 137.5 150 46.0
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.2e-29 134.8 137 52.6
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.6e-29 134.4 324 34.3
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 3.5e-29 133.3 170 51.8
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.2e-28 130.6 150 46.0
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 2.9e-28 130.2 248 35.5
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.9e-28 130.2 150 46.0
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.9e-27 127.5 148 50.0
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 1.9e-27 127.5 257 34.6
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 1.2e-26 124.8 225 38.2
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 6.1e-26 122.5 326 33.7
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.0e-25 121.7 312 31.1
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.6e-24 117.1 190 41.1
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 3.7e-23 113.2 106 67.0
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 5.4e-22 109.4 251 32.7
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 2.7e-21 107.1 130 46.2
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.5e-21 106.7 367 26.4
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 3.5e-21 106.7 194 42.3
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 2.7e-18 97.1 235 33.2
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 8.0e-18 95.5 263 28.1
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 1.5e-16 91.3 92 51.1
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.1e-14 85.1 214 31.3
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 1.1e-14 85.1 127 44.1
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 7.0e-14 82.4 224 33.0
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 7.0e-14 82.4 224 33.0
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 7.0e-14 82.4 103 51.5
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 4.5e-13 79.7 127 44.1
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.7e-12 77.8 48 72.9
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 8.6e-12 75.5 318 26.1
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 7.2e-11 72.4 208 31.2
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 7.2e-11 72.4 275 28.7
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 9.5e-11 72.0 140 30.7
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 9.5e-11 72.0 140 30.7
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 2.1e-10 70.9 84 47.6
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 5.7e-08 62.8 94 40.4
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 1.3e-07 61.6 142 36.6
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 4.9e-07 59.7 53 52.8
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 8.3e-07 58.9 53 56.6
MBI07_g40370_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 9.2e-06 55.5 47 57.4


User provided reference genes

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