Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 2.4e-159 565.5 290 100.0
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 9.6e-140 500.4 291 87.3
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 1.2e-137 493.4 287 86.4
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 3.3e-124 448.7 294 76.5
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 3.6e-123 445.3 294 76.5
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 1.1e-122 443.7 295 77.6
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.2e-121 440.3 295 75.6
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.2e-121 440.3 295 75.6
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 2.2e-120 436.0 295 75.6
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 4.9e-120 434.9 295 73.9
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 1.2e-118 430.3 294 73.5
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 4.6e-118 428.3 294 73.5
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 1.0e-117 427.2 294 75.2
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 5.1e-117 424.9 294 73.8
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 6.7e-117 424.5 293 73.4
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 6.7e-117 424.5 294 73.8
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 1.5e-116 423.3 294 73.5
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 9.6e-116 420.6 295 72.2
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 1.6e-115 419.9 294 71.8
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 1.6e-115 419.9 294 74.5
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 2.1e-115 419.5 292 73.6
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 3.7e-115 418.7 295 71.9
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 6.2e-115 417.9 295 72.5
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 6.2e-115 417.9 295 72.5
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 1.1e-114 417.2 294 73.8
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.4e-114 416.8 293 73.0
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 1.8e-114 416.4 294 72.8
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 3.1e-114 415.6 294 73.1
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 3.1e-114 415.6 298 71.5
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 6.9e-114 414.5 294 72.1
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 9.0e-114 414.1 293 72.7
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 9.0e-114 414.1 296 72.3
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 1.2e-113 413.7 293 72.7
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 1.2e-113 413.7 294 71.8
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 1.5e-113 413.3 293 72.7
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 3.4e-113 412.1 294 70.7
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 3.4e-113 412.1 294 71.1
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 5.8e-113 411.4 289 72.3
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 7.6e-113 411.0 295 70.2
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 1.0e-112 410.6 295 70.8
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 1.3e-112 410.2 296 70.6
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 2.2e-112 409.5 294 73.5
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 2.2e-112 409.5 293 71.3
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 4.9e-112 408.3 295 71.5
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 8.4e-112 407.5 294 70.1
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 8.4e-112 407.5 294 70.1
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 8.4e-112 407.5 293 71.7
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 1.1e-111 407.1 294 69.7
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.1e-111 407.1 295 70.8
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 3.2e-111 405.6 317 67.2
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 5.5e-111 404.8 289 70.6
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 7.1e-111 404.4 294 69.7
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 7.1e-111 404.4 295 69.8
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 9.3e-111 404.1 294 70.1
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 9.3e-111 404.1 281 74.7
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 9.3e-111 404.1 292 72.6
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 1.6e-110 403.3 297 70.4
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.1e-110 402.9 319 66.8
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 2.7e-110 402.5 293 71.3
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 6.0e-110 401.4 290 69.3
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 6.0e-110 401.4 290 70.3
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 1.0e-109 400.6 294 69.7
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.0e-109 400.6 294 69.0
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 1.0e-109 400.6 295 70.2
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 2.3e-109 399.4 291 70.1
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 3.0e-109 399.1 294 69.4
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 3.0e-109 399.1 294 69.0
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 5.1e-109 398.3 296 69.6
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 8.7e-109 397.5 306 67.3
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 8.7e-109 397.5 306 67.3
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 2.5e-108 396.0 293 67.9
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 3.3e-108 395.6 323 65.0
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 7.4e-108 394.4 329 65.7
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 9.6e-108 394.0 292 69.9
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 2.1e-107 392.9 297 70.4
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 4.8e-107 391.7 297 68.4
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 8.2e-107 391.0 306 66.7
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 3.1e-106 389.0 292 69.2
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 3.1e-106 389.0 296 68.6
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 4.1e-106 388.7 291 69.4
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 6.9e-106 387.9 321 65.7
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 1.5e-105 386.7 352 59.1
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 2.0e-105 386.3 294 67.7
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 2.6e-105 386.0 291 68.7
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 4.5e-105 385.2 293 67.9
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 1.7e-104 383.3 327 62.4
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 3.8e-104 382.1 290 67.2
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 4.2e-103 378.6 298 66.1
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.6e-102 376.7 290 66.6
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 2.7e-102 375.9 290 66.6
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 2.7e-102 375.9 305 64.9
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 2.7e-102 375.9 292 66.1
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 3.6e-102 375.6 294 67.0
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 3.9e-101 372.1 271 70.1
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 5.1e-101 371.7 294 65.3
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 8.2e-99 364.4 335 59.7
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 4.1e-98 362.1 297 63.0
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 9.0e-98 360.9 285 66.3
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 9.0e-98 360.9 290 64.1
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 2.0e-97 359.8 286 66.1
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 3.8e-96 355.5 290 63.1
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 8.5e-96 354.4 295 64.1
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 1.4e-95 353.6 286 66.8
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.5e-95 352.8 310 61.3
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 1.4e-93 347.1 294 62.9
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 2.3e-93 346.3 294 60.9
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 4.4e-92 342.0 301 61.8
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 5.7e-92 341.7 237 73.4
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 2.2e-91 339.7 295 61.0
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 4.8e-91 338.6 241 71.4
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.0e-89 333.2 237 71.3
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.6e-89 332.8 240 67.5
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 7.7e-89 331.3 295 61.4
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 7.9e-86 321.2 294 60.9
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 7.9e-86 321.2 290 61.7
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 1.8e-85 320.1 278 61.2
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 6.7e-85 318.2 318 58.5
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 4.4e-84 315.5 307 56.7
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 5.3e-82 308.5 294 58.5
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 1.2e-81 307.4 205 75.6
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 1.0e-80 304.3 301 57.1
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 6.1e-78 295.0 294 56.1
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.0e-77 294.3 290 53.8
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 3.0e-77 292.7 209 69.9
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 8.2e-75 284.6 295 56.9
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 1.8e-74 283.5 293 54.3
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 5.9e-73 278.5 252 59.1
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.9e-72 276.2 273 54.9
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 6.5e-72 275.0 282 56.4
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 1.2e-70 270.8 217 67.7
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 1.4e-69 267.3 246 59.3
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 4.4e-68 262.3 286 52.4
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 2.8e-67 259.6 207 65.2
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 2.8e-67 259.6 205 65.9
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 3.7e-67 259.2 324 49.7
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 1.2e-65 254.2 289 49.8
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 3.5e-65 252.7 222 57.7
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 3.5e-65 252.7 365 42.5
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 1.2e-62 244.2 204 60.8
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 1.7e-56 223.8 318 41.2
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 5.0e-56 222.2 201 59.2
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 1.6e-54 217.2 179 65.9
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 4.7e-54 215.7 333 39.9
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 1.5e-44 184.1 329 35.9
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 8.6e-40 168.3 160 58.1
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 5.4e-34 149.1 90 81.1
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 1.2e-33 147.9 309 34.3
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 2.1e-33 147.1 90 77.8
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 5.4e-26 122.5 79 72.2
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 8.1e-22 108.6 60 85.0
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 4.0e-21 106.3 67 79.1
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 3.4e-20 103.2 101 57.4
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 2.9e-19 100.1 228 37.3
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 2.4e-18 97.1 255 34.9
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 6.0e-17 92.4 331 27.5
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.5e-15 87.8 142 41.5
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 1.6e-14 84.3 55 76.4
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 7.1e-10 68.9 45 66.7
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 4.6e-09 66.2 41 68.3
SEGI_18914 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 1.6e-06 57.8 106 42.5


User provided reference genes

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