Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 2.6e-311 1071.2 547 100.0
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 1.6e-252 875.9 552 81.7
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 6.9e-248 860.5 554 79.2
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 2.9e-238 828.6 551 77.1
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 1.8e-227 792.7 563 72.6
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 2.7e-220 768.8 566 70.5
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 4.6e-220 768.1 568 71.0
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 3.9e-219 765.0 562 69.4
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 1.1e-218 763.5 487 77.6
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 1.3e-217 760.0 569 71.0
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 3.7e-217 758.4 555 70.6
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 4.5e-215 751.5 572 69.1
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 5.9e-215 751.1 567 68.8
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 6.5e-214 747.7 564 67.6
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.2e-212 743.4 565 66.9
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.0e-211 740.3 563 66.8
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.3e-211 739.2 565 66.5
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 6.7e-211 737.6 565 66.4
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 1.1e-210 736.9 567 66.7
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 1.5e-210 736.5 549 67.9
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 2.0e-210 736.1 562 68.3
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 4.3e-210 734.9 568 67.1
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 4.3e-210 734.9 544 69.1
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 5.3e-208 728.0 544 69.3
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 1.5e-207 726.5 565 66.5
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 1.5e-207 726.5 565 66.2
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.6e-207 725.7 563 66.1
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 5.9e-207 724.5 567 65.1
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 2.2e-206 722.6 569 67.0
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 3.8e-206 721.8 563 65.2
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 5.0e-206 721.5 565 66.9
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 6.5e-206 721.1 566 67.8
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 8.5e-206 720.7 495 71.7
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.4e-205 719.9 565 66.0
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 4.2e-205 718.4 565 65.8
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 7.2e-205 717.6 566 64.5
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.6e-204 716.5 563 65.4
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 7.9e-204 714.1 554 66.2
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 1.0e-203 713.8 567 66.0
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 1.0e-203 713.8 569 65.2
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 1.8e-203 713.0 567 65.6
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 1.1e-202 710.3 564 65.6
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 1.1e-202 710.3 553 65.6
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 1.5e-202 709.9 564 65.2
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.0e-202 709.5 567 67.9
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 3.3e-202 708.8 566 64.5
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 3.3e-202 708.8 566 66.8
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 5.7e-202 708.0 564 65.1
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.7e-201 706.4 568 65.1
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 2.2e-201 706.1 569 67.3
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 4.8e-201 704.9 561 65.8
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 4.8e-201 704.9 564 66.3
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 1.1e-200 703.7 568 65.0
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.1e-200 703.7 564 65.8
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 1.1e-200 703.7 504 71.0
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.8e-200 703.0 507 70.0
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.8e-200 703.0 564 65.8
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.4e-200 702.6 567 67.4
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 2.4e-200 702.6 566 64.7
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 4.1e-200 701.8 568 67.4
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 1.6e-199 699.9 568 65.3
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 1.3e-198 696.8 568 66.0
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 2.2e-198 696.0 555 65.4
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 3.8e-198 695.3 564 65.6
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 6.5e-198 694.5 499 68.7
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 8.5e-198 694.1 564 65.1
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 8.5e-198 694.1 566 64.0
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 1.9e-197 693.0 568 64.4
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 3.2e-197 692.2 564 64.9
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 4.2e-197 691.8 564 64.7
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 9.4e-197 690.6 569 63.3
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.6e-196 689.9 501 71.5
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 6.1e-196 688.0 577 63.3
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 8.0e-196 687.6 566 64.0
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 1.0e-195 687.2 552 63.2
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.8e-195 686.4 571 61.5
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 5.2e-195 684.9 573 63.0
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 6.7e-195 684.5 500 69.6
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 1.1e-194 683.7 566 63.3
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 3.3e-194 682.2 565 63.2
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 5.7e-194 681.4 552 63.0
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 2.4e-192 676.0 566 63.3
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 4.1e-192 675.2 555 64.5
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 5.3e-192 674.9 558 64.9
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 9.1e-192 674.1 570 63.2
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 1.2e-191 673.7 572 62.2
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 7.7e-191 671.0 513 65.5
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.9e-190 669.1 563 62.0
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.6e-188 663.3 565 61.8
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 3.0e-187 659.1 497 67.0
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 3.0e-187 659.1 560 63.4
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 6.8e-187 657.9 556 61.3
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 3.4e-186 655.6 553 61.7
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 7.5e-186 654.4 572 63.3
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 9.8e-186 654.1 555 61.4
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 2.8e-185 652.5 562 60.5
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 3.7e-185 652.1 497 65.4
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.8e-184 649.8 581 59.2
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.8e-184 649.8 564 60.8
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 1.8e-184 649.8 429 73.2
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 4.1e-184 648.7 564 62.1
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 9.1e-184 647.5 495 65.5
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 9.1e-184 647.5 502 63.7
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 3.5e-183 645.6 502 66.5
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 2.9e-182 642.5 557 61.2
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 8.5e-182 641.0 550 60.9
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 3.6e-180 635.6 544 60.7
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 1.4e-179 633.6 560 60.2
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 3.0e-179 632.5 564 60.5
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 4.0e-179 632.1 494 60.7
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 1.5e-173 613.6 490 61.6
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 2.8e-172 609.4 490 61.8
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 1.7e-166 590.1 423 69.0
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 2.3e-166 589.7 505 57.0
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 5.6e-165 585.1 498 59.6
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 1.7e-161 573.5 425 65.4
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 6.4e-161 571.6 530 56.6
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 5.0e-158 562.0 347 76.7
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 6.4e-153 545.0 382 68.3
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 2.6e-146 523.1 490 59.8
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 6.9e-139 498.4 497 50.1
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 5.8e-138 495.4 468 58.3
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 7.6e-138 495.0 490 50.4
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 3.2e-128 463.0 494 49.6
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 2.4e-120 436.8 514 43.6
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 6.7e-118 428.7 258 75.6
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 5.6e-117 425.6 500 47.8
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 1.5e-114 417.5 441 48.1
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 1.2e-106 391.3 448 52.2
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.1e-99 368.2 547 42.6
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 3.0e-94 350.1 484 46.3
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 5.9e-90 335.9 289 60.6
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 7.2e-88 328.9 469 39.2
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.0e-86 325.1 303 51.2
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 4.4e-77 293.1 371 47.2
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 1.3e-73 281.6 406 40.1
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 2.8e-68 263.8 326 41.4
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 7.2e-64 249.2 243 54.7
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 2.6e-61 240.7 553 34.4
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 1.8e-38 164.9 270 39.3
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 8.3e-36 156.0 620 24.0
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 3.6e-31 140.6 151 55.6
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 1.7e-17 95.1 92 58.7
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 4.9e-12 77.0 81 50.6


User provided reference genes

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