Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G2000 Erigeron canadensis HOM05D005476 ORTHO05D006886 1.8e-218 762.3 377 100.0
Lsat_1_v5_gn_9_20101 Lactuca sativa HOM05D005476 ORTHO05D006886 8.9e-138 494.2 369 68.6
HanXRQChr04g0109161 Helianthus annuus HOM05D005476 ORTHO05D006886 2.7e-126 456.1 346 65.6
Dinv14437 Davidia involucrata HOM05D005476 ORTHO05D006886 4.6e-126 455.3 381 61.2
Dinv28640 Davidia involucrata HOM05D005476 ORTHO05D006886 8.4e-120 434.5 378 60.6
CSS0028478 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 3.5e-118 429.1 392 58.4
CSS0011477 Camellia sinensis var. sinensis HOM05D005476 ORTHO05D006886 2.3e-117 426.4 392 58.2
Nitab4.5_0001806g0030 Nicotiana tabacum HOM05D005476 ORTHO05D006886 7.3e-116 421.4 375 58.9
DCAR_007375 Daucus carota HOM05D005476 ORTHO05D006886 2.4e-114 416.4 380 58.4
Nitab4.5_0000010g0290 Nicotiana tabacum HOM05D005476 ORTHO05D006886 3.1e-114 416.0 372 58.3
PGSC0003DMG400030356 Solanum tuberosum HOM05D005476 ORTHO05D006886 2.6e-113 412.9 375 57.6
Peaxi162Scf00540g00426 Petunia axillaris HOM05D005476 ORTHO05D006886 9.9e-113 411.0 373 57.6
Solyc06g076950.3 Solanum lycopersicum HOM05D005476 ORTHO05D006886 1.3e-112 410.6 377 56.8
Aqoxy2G00901 Aquilegia oxysepala HOM05D005476 ORTHO05D006886 2.2e-112 409.8 385 56.9
Sopen06g033350 Solanum pennellii HOM05D005476 ORTHO05D006886 2.9e-112 409.5 375 57.1
CAN.G394.127 Capsicum annuum HOM05D005476 ORTHO05D006886 3.8e-112 409.1 375 56.8
Ciclev10028681m.g Citrus clementina HOM05D005476 ORTHO05D006886 5.4e-111 405.2 377 56.8
Haze_24322 Corylus avellana HOM05D005476 ORTHO05D006886 3.5e-110 402.5 335 61.2
Cfa011695 Carpinus fangiana HOM05D005476 ORTHO05D006886 6.0e-110 401.7 330 62.1
Eucgr.B02253 Eucalyptus grandis HOM05D005476 ORTHO05D006886 6.0e-110 401.7 330 60.9
TAR633G0563 Trochodendron aralioides HOM05D005476 ORTHO05D006886 7.9e-110 401.4 374 57.0
TAR636G1181 Trochodendron aralioides HOM05D005476 ORTHO05D006886 7.9e-110 401.4 322 61.8
Potri.009G046200 Populus trichocarpa HOM05D005476 ORTHO05D006886 1.7e-109 400.2 377 57.0
QL01p038276 Quercus lobata HOM05D005476 ORTHO05D006886 2.5e-108 396.4 333 61.3
Prupe.6G057500 Prunus persica HOM05D005476 ORTHO05D006886 3.3e-108 396.0 384 56.0
CiPaw.13G077600 Carya illinoinensis HOM05D005476 ORTHO05D006886 4.3e-108 395.6 365 56.4
Migut.N00789 Erythranthe guttata HOM05D005476 ORTHO05D006886 4.3e-108 395.6 331 60.7
FAN21G0574 Fragaria x ananassa HOM05D005476 ORTHO05D006886 4.3e-108 395.6 379 56.2
CiPaw.14G059600 Carya illinoinensis HOM05D005476 ORTHO05D006886 9.6e-108 394.4 320 61.9
CANSAT25G3760 Cannabis sativa HOM05D005476 ORTHO05D006886 1.6e-107 393.7 377 55.2
Hund18848 Selenicereus undatus HOM05D005476 ORTHO05D006886 2.1e-107 393.3 329 60.8
FvH4_3g38550 Fragaria vesca HOM05D005476 ORTHO05D006886 4.8e-107 392.1 379 55.7
FAN16G3667 Fragaria x ananassa HOM05D005476 ORTHO05D006886 4.8e-107 392.1 379 55.9
RcHm_v2.0_Chr5g0069451 Rosa chinensis HOM05D005476 ORTHO05D006886 6.2e-107 391.7 391 55.2
Atru.chr3.4220 Acer truncatum HOM05D005476 ORTHO05D006886 8.1e-107 391.3 384 54.4
Duzib170G1024 Durio zibethinus HOM05D005476 ORTHO05D006886 8.1e-107 391.3 380 56.1
Ah.08g221180 Amaranthus hybridus HOM05D005476 ORTHO05D006886 1.1e-106 391.0 386 53.4
COL.COLO4_19157 Corchorus olitorius HOM05D005476 ORTHO05D006886 1.1e-106 391.0 381 56.4
Rhsim13G0069500 Rhododendron simsii HOM05D005476 ORTHO05D006886 1.4e-106 390.6 370 57.0
Nn2g13708 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.8e-106 390.2 322 61.5
FAN11G1091 Fragaria x ananassa HOM05D005476 ORTHO05D006886 2.4e-106 389.8 379 55.4
EL10Ac7g16167 Beta vulgaris HOM05D005476 ORTHO05D006886 3.1e-106 389.4 332 57.5
Thecc.09G301800 Theobroma cacao HOM05D005476 ORTHO05D006886 4.0e-106 389.0 388 55.2
TWI31G0160 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 4.0e-106 389.0 382 55.8
Potri.001G251500 Populus trichocarpa HOM05D005476 ORTHO05D006886 6.9e-106 388.3 371 54.4
vmacro02961 Vaccinium macrocarpon HOM05D005476 ORTHO05D006886 6.9e-106 388.3 445 49.9
TWI79G0899 Tripterygium wilfordii HOM05D005476 ORTHO05D006886 9.0e-106 387.9 382 55.8
Duzib168G1303 Durio zibethinus HOM05D005476 ORTHO05D006886 2.0e-105 386.7 360 58.6
Gorai.006G106700 Gossypium raimondii HOM05D005476 ORTHO05D006886 2.6e-105 386.3 374 56.7
Cc01_g14180 Coffea canephora HOM05D005476 ORTHO05D006886 9.9e-105 384.4 322 58.7
PSO801G0319 Papaver somniferum HOM05D005476 ORTHO05D006886 9.9e-105 384.4 297 64.3
AUR62001646 Chenopodium quinoa HOM05D005476 ORTHO05D006886 1.3e-104 384.0 373 53.1
MD11G1074700 Malus domestica HOM05D005476 ORTHO05D006886 1.3e-104 384.0 384 54.4
Sabra09G0033300 Salix brachista HOM05D005476 ORTHO05D006886 4.9e-104 382.1 386 54.7
SalBow2G2575 Salvia bowleyana HOM05D005476 ORTHO05D006886 4.9e-104 382.1 368 54.6
Manes.02G119400 Manihot esculenta HOM05D005476 ORTHO05D006886 1.1e-103 380.9 368 54.3
GSVIVG01024740001 Vitis vinifera HOM05D005476 ORTHO05D006886 1.4e-103 380.6 382 53.4
AUR62020130 Chenopodium quinoa HOM05D005476 ORTHO05D006886 2.4e-103 379.8 332 57.2
MD03G1070700 Malus domestica HOM05D005476 ORTHO05D006886 5.5e-103 378.6 384 54.2
SGA_v2.0_scaffold146G36140 Striga asiatica HOM05D005476 ORTHO05D006886 7.1e-103 378.3 353 55.2
FAN25G3001 Fragaria x ananassa HOM05D005476 ORTHO05D006886 1.2e-102 377.5 405 51.9
SalBow5G1841 Salvia bowleyana HOM05D005476 ORTHO05D006886 3.5e-102 375.9 321 59.2
PSO339G1712 Papaver somniferum HOM05D005476 ORTHO05D006886 6.0e-102 375.2 297 62.6
Cpa.g.sc415.4 Carica papaya HOM05D005476 ORTHO05D006886 1.0e-101 374.4 390 53.3
Manes.01G161600 Manihot esculenta HOM05D005476 ORTHO05D006886 1.9e-100 370.2 367 52.9
Nn2g11493 Nelumbo nucifera HOM05D005476 ORTHO05D006886 1.3e-99 367.5 277 67.9
SGA_v2.0_scaffold120G32912 Striga asiatica HOM05D005476 ORTHO05D006886 1.4e-98 364.0 362 53.0
BraA10t43679Z Brassica rapa HOM05D005476 ORTHO05D006886 6.9e-98 361.7 332 58.1
Ca_05598_v3 Cicer arietinum L. HOM05D005476 ORTHO05D006886 1.5e-97 360.5 378 51.9
TPR.G5779 Trifolium pratense HOM05D005476 ORTHO05D006886 1.5e-97 360.5 373 51.7
unitig_8.g3687 Utricularia gibba HOM05D005476 ORTHO05D006886 1.5e-97 360.5 328 54.9
Psat2g058600 Pisum sativum HOM05D005476 ORTHO05D006886 2.0e-97 360.1 335 54.9
arahy.Tifrunner.gnm1.ann1.Q06W8H Arachis hypogaea HOM05D005476 ORTHO05D006886 2.6e-97 359.8 387 50.9
Sc06g0008450 Simmondsia chinensis HOM05D005476 ORTHO05D006886 3.4e-97 359.4 373 51.5
A10p15540 Brassica napus HOM05D005476 ORTHO05D006886 1.0e-96 357.8 333 57.7
C09p50810 Brassica napus HOM05D005476 ORTHO05D006886 1.7e-96 357.1 331 57.7
MBI14_g42907_MAGBIO Magnolia biondii HOM05D005476 ORTHO05D006886 2.2e-96 356.7 329 55.6
Thhalv10014005m.g Eutrema salsugineum HOM05D005476 ORTHO05D006886 3.8e-96 355.9 333 56.5
MELO3C020550.2 Cucumis melo HOM05D005476 ORTHO05D006886 4.9e-96 355.5 345 54.8
AT5G58730 Arabidopsis thaliana HOM05D005476 ORTHO05D006886 8.4e-96 354.8 329 57.1
LjContig00155g0002690 Lotus japonicus HOM05D005476 ORTHO05D006886 3.2e-95 352.8 323 55.1
BolC9t57941H Brassica oleracea HOM05D005476 ORTHO05D006886 5.5e-95 352.1 331 57.1
THA.LOC104810712 Tarenaya hassleriana HOM05D005476 ORTHO05D006886 7.1e-95 351.7 341 56.3
Glyma.14G193500 Glycine max HOM05D005476 ORTHO05D006886 2.1e-94 350.1 371 50.1
AL8G35010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 4.6e-94 349.0 329 55.6
Carub.0008s1935 Capsella rubella HOM05D005476 ORTHO05D006886 6.0e-94 348.6 331 55.6
Sp6g20420 Schrenkiella parvula HOM05D005476 ORTHO05D006886 6.0e-94 348.6 324 56.5
Lalb_Chr17g0345081 Lupinus albus HOM05D005476 ORTHO05D006886 1.0e-93 347.8 376 50.3
ClCG03G000760 Citrullus lanatus HOM05D005476 ORTHO05D006886 1.3e-93 347.4 345 54.2
Phvul.008G261400 Phaseolus vulgaris HOM05D005476 ORTHO05D006886 1.8e-93 347.1 373 49.9
PGR102G2402 Punica granatum HOM05D005476 ORTHO05D006886 1.8e-93 347.1 290 61.0
CARHR272640 Cardamine hirsuta HOM05D005476 ORTHO05D006886 3.0e-93 346.3 320 57.2
Glyma.02G226600 Glycine max HOM05D005476 ORTHO05D006886 3.0e-93 346.3 379 49.3
CDE04G1962 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 5.1e-93 345.5 299 57.5
Aa31LG11G490 Aethionema arabicum HOM05D005476 ORTHO05D006886 8.7e-93 344.7 319 57.7
Medtr5g070350 Medicago truncatula HOM05D005476 ORTHO05D006886 1.9e-92 343.6 375 49.1
BcaC04g19834 Brassica carinata HOM05D005476 ORTHO05D006886 2.5e-92 343.2 331 56.2
Sed0014418 Sechium edule HOM05D005476 ORTHO05D006886 3.3e-92 342.8 345 52.2
Sed0016907 Sechium edule HOM05D005476 ORTHO05D006886 3.3e-92 342.8 330 54.8
Gohir.A09G090300 Gossypium hirsutum HOM05D005476 ORTHO05D006886 7.4e-92 341.7 289 62.3
unitig_22.g5210 Utricularia gibba HOM05D005476 ORTHO05D006886 7.4e-92 341.7 335 52.8
Gohir.D09G090400 Gossypium hirsutum HOM05D005476 ORTHO05D006886 1.1e-90 337.8 289 61.9
ATR0618G050 Amborella trichopoda HOM05D005476 ORTHO05D006886 4.1e-90 335.9 322 52.2
SalBow8G4850 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.9e-88 329.7 321 53.9
Oeu013433.3 Olea europaea HOM05D005476 ORTHO05D006886 5.5e-87 325.5 279 60.9
SHI19142 Sapria himalayana HOM05D005476 ORTHO05D006886 2.7e-86 323.2 333 51.7
VMungo0647G0678 Vigna mungo HOM05D005476 ORTHO05D006886 2.3e-85 320.1 282 56.7
HPP92_002247 Vanilla planifolia HOM05D005476 ORTHO05D006886 2.5e-84 316.6 337 50.4
Lj1A137G45 Lonicera japonica HOM05D005476 ORTHO05D006886 8.2e-83 311.6 331 51.7
CsaV3_1G036180 Cucumis sativus L. HOM05D005476 ORTHO05D006886 9.0e-82 308.1 286 56.6
CDE02G0680 Ceratophyllum demersum HOM05D005476 ORTHO05D006886 2.0e-76 290.4 289 52.2
Os03g0737701 Oryza sativa ssp. japonica HOM05D005476 ORTHO05D006886 4.4e-76 289.3 328 47.0
Oeu000377.2 Olea europaea HOM05D005476 ORTHO05D006886 2.9e-72 276.6 269 56.9
Zm00001eb056490 Zea mays HOM05D005476 ORTHO05D006886 6.5e-72 275.4 299 47.8
SEGI_26423 Sequoiadendron giganteum HOM05D005476 ORTHO05D006886 2.5e-63 246.9 288 45.1
Mapoly0060s0007 Marchantia polymorpha HOM05D005476 ORTHO05D006886 6.7e-61 238.8 283 44.5
SMO329G0019 Selaginella moellendorffii HOM05D005476 ORTHO05D006886 2.6e-60 236.9 271 45.0
AagrBONN_evm.TU.Sc2ySwM_362.363 Anthoceros agrestis HOM05D005476 ORTHO05D006886 2.8e-59 233.4 281 43.4
Pp3c1_3930 Physcomitrium patens HOM05D005476 ORTHO05D006886 5.9e-57 225.7 284 43.0
arahy.Tifrunner.gnm1.ann1.70CJD0 Arachis hypogaea HOM05D005476 ORTHO05D006886 1.3e-56 224.6 240 50.8
CBR_g23861 Chara braunii HOM05D005476 ORTHO05D006886 7.2e-55 218.8 289 40.1
Pp3c7_18020 Physcomitrium patens HOM05D005476 ORTHO05D006886 2.3e-53 213.8 283 41.0
AL1010U10010 Arabidopsis lyrata HOM05D005476 ORTHO05D006886 6.8e-53 212.2 199 56.3
Gohir.D05G089750 Gossypium hirsutum HOM05D005476 ORTHO05D006886 2.2e-48 197.2 177 59.3
A03p12050 Brassica napus HOM05D005476 ORTHO05D006886 2.8e-46 190.3 174 56.3
HanXRQChr16g0507541 Helianthus annuus HOM05D005476 ORTHO05D006886 7.0e-34 149.1 101 68.3
BraA03t10517Z Brassica rapa HOM05D005476 ORTHO05D006886 6.6e-24 115.9 105 56.2
RcHm_v2.0_Chr6g0276161 Rosa chinensis HOM05D005476 ORTHO05D006886 1.4e-21 108.2 147 45.6
C03p15890 Brassica napus HOM05D000062 ORTHO05D021669 1.8e-21 107.8 121 50.4
BolC3t14020H Brassica oleracea HOM05D000062 ORTHO05D006886 1.8e-21 107.8 121 50.4
Actinidia23243 Actinidia chinensis HOM05D005476 ORTHO05D006886 3.7e-19 100.1 71 67.6
SalBow8G2493 Salvia bowleyana HOM05D005476 ORTHO05D006886 1.9e-18 97.8 177 37.3
arahy.Tifrunner.gnm1.ann1.Y3WSKM Arachis hypogaea HOM05D005476 ORTHO05D006886 4.1e-18 96.7 91 52.7
RcHm_v2.0_Chr7g0201761 Rosa chinensis HOM05D005476 ORTHO05D006886 9.2e-18 95.5 146 43.8
RcHm_v2.0_Chr7g0242751 Rosa chinensis HOM05D005476 ORTHO05D006886 4.0e-13 80.1 87 51.7
SalBow5G5594 Salvia bowleyana HOM05D005476 ORTHO05D006886 2.2e-11 74.3 71 54.9
RcHm_v2.0_Chr6g0303391 Rosa chinensis HOM05D005476 ORTHO05D006886 1.1e-07 62.0 58 51.7
Gohir.D05G260400 Gossypium hirsutum HOM05D004293 ORTHO05D005044 1.5e-07 61.6 184 29.3
Gorai.009G272300 Gossypium raimondii HOM05D004293 ORTHO05D005044 1.5e-07 61.6 184 29.3
ECA246G0240 Erigeron canadensis HOM05D004293 ORTHO05D005044 1.6e-06 58.2 155 29.0
Gohir.A05G258700 Gossypium hirsutum HOM05D004293 ORTHO05D005044 1.6e-06 58.2 184 28.3
Duzib093G2062 Durio zibethinus HOM05D004293 ORTHO05D005044 2.8e-06 57.4 187 27.3
HPP92_023715 Vanilla planifolia HOM05D000559 ORTHO05D000596 6.2e-06 56.2 51 51.0
DCAR_013830 Daucus carota HOM05D004293 ORTHO05D005044 8.1e-06 55.8 130 31.5


User provided reference genes

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