Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 7.5e-125 450.7 251 100.0
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 1.0e-105 387.1 253 85.8
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 9.9e-101 370.5 248 83.9
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 5.4e-99 364.8 256 82.0
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 8.7e-97 357.5 256 81.2
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 6.2e-95 351.3 256 80.1
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 6.9e-94 347.8 255 77.6
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 9.0e-94 347.4 250 80.4
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 1.2e-93 347.1 253 73.1
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.6e-93 345.9 250 80.0
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 3.4e-93 345.5 254 75.6
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 2.2e-92 342.8 255 77.3
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 2.9e-92 342.4 254 76.0
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 4.9e-92 341.7 259 76.1
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 5.4e-91 338.2 253 75.1
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 7.1e-91 337.8 253 74.3
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 1.6e-90 336.7 256 74.6
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 3.5e-90 335.5 250 74.8
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 6.0e-90 334.7 266 71.8
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 1.0e-89 334.0 254 76.4
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.3e-89 333.6 252 74.2
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.7e-89 333.2 254 76.4
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 8.7e-89 330.9 248 74.2
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 1.1e-88 330.5 249 75.5
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 1.5e-88 330.1 251 75.3
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 1.5e-88 330.1 251 73.3
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 1.9e-88 329.7 252 73.8
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 1.9e-88 329.7 253 74.7
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 1.9e-88 329.7 256 73.4
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 9.6e-88 327.4 243 71.2
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 1.6e-87 326.6 255 73.3
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 2.1e-87 326.2 257 74.3
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 2.1e-87 326.2 255 72.9
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 4.8e-87 325.1 243 75.3
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.4e-86 323.6 252 71.0
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 1.8e-86 323.2 255 71.4
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 4.0e-86 322.0 242 74.8
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 4.0e-86 322.0 257 72.0
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 4.0e-86 322.0 253 72.3
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 5.3e-86 321.6 251 70.9
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 5.3e-86 321.6 250 73.2
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 1.2e-85 320.5 256 71.9
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.5e-85 320.1 255 71.8
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 1.5e-85 320.1 257 72.0
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.6e-85 319.3 249 73.5
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 4.5e-85 318.5 246 72.8
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 5.8e-85 318.2 259 70.7
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.7e-84 316.6 250 74.8
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 2.2e-84 316.2 255 71.0
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 3.8e-84 315.5 255 72.9
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 3.8e-84 315.5 250 74.8
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 4.9e-84 315.1 247 74.5
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 8.4e-84 314.3 249 70.7
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 1.9e-83 313.2 253 68.8
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 1.9e-83 313.2 255 69.8
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.4e-83 312.8 250 72.8
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 2.4e-83 312.8 255 71.0
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 3.2e-83 312.4 238 74.8
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 3.2e-83 312.4 236 73.3
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 3.2e-83 312.4 246 71.5
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 3.2e-83 312.4 250 72.8
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.2e-83 312.4 257 70.0
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 3.2e-83 312.4 243 73.3
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 4.2e-83 312.0 255 69.8
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 4.2e-83 312.0 273 67.0
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 9.3e-83 310.8 237 73.4
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.2e-82 310.5 256 71.1
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 2.7e-82 309.3 254 67.7
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 2.7e-82 309.3 243 69.5
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 4.6e-82 308.5 237 73.4
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 6.0e-82 308.1 246 71.1
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 1.0e-81 307.4 256 69.5
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 1.3e-81 307.0 255 69.4
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.8e-81 306.6 257 70.0
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 1.8e-81 306.6 245 73.1
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 3.9e-81 305.4 246 70.3
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 3.9e-81 305.4 189 80.4
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 3.9e-81 305.4 257 70.0
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 1.5e-80 303.5 243 70.8
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 1.5e-80 303.5 256 70.3
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 2.5e-80 302.8 257 68.5
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 2.5e-80 302.8 256 72.3
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 5.6e-80 301.6 254 70.1
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 7.4e-80 301.2 243 70.0
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 7.4e-80 301.2 255 70.2
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 9.6e-80 300.8 246 71.1
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.8e-79 299.3 257 68.1
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 3.7e-79 298.9 260 67.3
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 4.8e-79 298.5 240 67.1
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 6.2e-79 298.1 247 66.4
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 2.6e-77 292.7 256 69.1
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 3.4e-77 292.4 198 73.7
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 5.8e-77 291.6 249 67.9
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 7.6e-77 291.2 245 68.6
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 7.6e-77 291.2 247 68.4
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 1.7e-76 290.0 243 68.7
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 2.9e-76 289.3 347 53.0
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 8.4e-76 287.7 198 70.7
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 1.1e-75 287.3 247 67.2
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 2.5e-75 286.2 242 67.4
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 1.6e-74 283.5 282 63.1
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 7.4e-72 274.6 226 63.7
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 5.3e-70 268.5 247 65.2
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.0e-68 264.2 254 63.8
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.0e-68 264.2 254 63.8
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 2.2e-68 263.1 298 57.0
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 9.3e-67 257.7 239 61.5
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 2.7e-66 256.1 247 58.3
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 2.7e-66 256.1 248 62.1
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.8e-65 253.4 251 60.2
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.8e-65 253.4 196 64.8
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 5.1e-65 251.9 246 59.8
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 8.7e-65 251.1 254 59.8
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 1.9e-64 250.0 305 50.5
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 2.5e-64 249.6 246 64.2
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 1.2e-58 230.7 179 65.4
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 8.2e-55 218.0 247 57.5
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.1e-54 217.6 249 55.4
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.0e-53 213.4 148 73.6
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 5.9e-53 211.8 217 54.4
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 1.9e-51 206.8 246 55.3
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 3.2e-51 206.1 243 53.9
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 4.2e-51 205.7 221 50.7
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 3.6e-50 202.6 136 76.5
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 4.8e-47 192.2 167 70.1
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 2.9e-44 183.0 132 72.7
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 3.2e-43 179.5 145 66.2
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 3.6e-42 176.0 149 72.5
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 3.1e-38 162.9 256 43.0
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 4.1e-38 162.5 136 66.2
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 2.2e-36 156.8 190 49.5
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 2.7e-34 149.8 194 54.1
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 1.4e-33 147.5 229 37.6
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 7.7e-29 131.7 215 36.7
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.2e-26 124.4 343 36.4
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 6.1e-26 122.1 242 33.9
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 2.6e-24 116.7 113 72.6
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 1.7e-23 114.0 92 63.0
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 2.8e-23 113.2 72 79.2
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 8.3e-23 111.7 109 62.4
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 9.5e-19 98.2 79 62.0
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 8.0e-18 95.1 79 60.8
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.0e-17 94.7 55 76.4
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 2.1e-10 70.5 77 66.2
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 1.8e-09 67.4 201 29.9
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.7e-07 59.7 34 73.5
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.1e-06 58.2 65 50.8
Hund07663 Selenicereus undatus HOM05D001165 ORTHO05D010360 4.1e-06 56.2 38 68.4
Mapoly0066s0045 Marchantia polymorpha HOM05D025310 ORTHO05D023473 9.2e-06 55.1 164 31.1


User provided reference genes

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