Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 2.1e-295 1018.5 589 100.0
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.1e-44 185.7 259 51.4
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 4.9e-34 150.2 568 32.7
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 8.7e-31 139.4 298 39.6
HanXRQChr17g0541641 Helianthus annuus HOM05D004299 ORTHO05D003557 2.5e-25 121.3 253 45.1
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 9.6e-22 109.4 261 36.0
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 6.2e-21 106.7 229 38.4
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 2.4e-20 104.8 259 37.5
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 1.2e-19 102.4 283 37.8
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 4.5e-19 100.5 362 31.2
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 7.6e-19 99.8 268 34.3
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 2.2e-18 98.2 156 46.2
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 2.2e-18 98.2 304 32.2
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 3.8e-18 97.4 615 26.5
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 5.0e-18 97.1 176 40.9
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 8.4e-18 96.3 248 37.1
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 8.4e-18 96.3 248 37.1
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.1e-17 95.9 258 36.4
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 1.1e-17 95.9 239 36.4
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 1.1e-17 95.9 237 35.9
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 1.1e-17 95.9 288 34.4
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 1.4e-17 95.5 316 32.0
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 1.9e-17 95.1 308 33.4
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 1.9e-17 95.1 277 36.5
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 3.2e-17 94.4 214 39.3
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 4.2e-17 94.0 220 36.8
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 4.2e-17 94.0 217 35.9
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 9.3e-17 92.8 257 32.3
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 9.3e-17 92.8 607 26.2
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 9.3e-17 92.8 215 35.8
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 1.2e-16 92.4 315 32.4
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 1.2e-16 92.4 338 30.5
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 1.6e-16 92.0 312 33.0
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.6e-16 92.0 317 31.9
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 2.1e-16 91.7 299 34.8
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 2.1e-16 91.7 249 34.9
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 4.6e-16 90.5 348 32.5
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 6.1e-16 90.1 303 33.3
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 6.1e-16 90.1 193 40.9
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 6.1e-16 90.1 298 31.2
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.0e-15 89.4 298 31.2
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 1.3e-15 89.0 298 34.2
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 2.3e-15 88.2 297 31.0
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 2.3e-15 88.2 348 32.8
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 2.3e-15 88.2 274 32.5
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 2.3e-15 88.2 339 31.6
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 2.3e-15 88.2 319 28.8
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 3.0e-15 87.8 372 30.1
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 3.0e-15 87.8 309 31.4
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 3.0e-15 87.8 302 30.5
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 3.9e-15 87.4 253 35.2
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 3.9e-15 87.4 336 28.3
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 8.7e-15 86.3 285 32.3
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.1e-14 85.9 289 31.8
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.1e-14 85.9 303 34.0
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 1.5e-14 85.5 130 46.9
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.5e-14 85.5 241 33.6
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 1.9e-14 85.1 238 33.6
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.5e-14 84.7 242 33.5
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 5.7e-14 83.6 302 29.5
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 5.7e-14 83.6 332 30.7
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 5.7e-14 83.6 289 29.8
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 7.4e-14 83.2 336 31.0
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 9.7e-14 82.8 168 38.1
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 9.7e-14 82.8 168 38.1
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 9.7e-14 82.8 217 33.2
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 9.7e-14 82.8 312 31.7
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 1.6e-13 82.0 275 33.8
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 1.6e-13 82.0 304 30.9
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.8e-13 81.3 322 30.7
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 3.7e-13 80.9 304 32.2
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 4.8e-13 80.5 321 30.5
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 4.8e-13 80.5 250 35.2
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 6.3e-13 80.1 289 32.2
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 8.2e-13 79.7 263 29.3
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 8.2e-13 79.7 337 28.8
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 1.4e-12 79.0 82 51.2
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 1.4e-12 79.0 292 30.5
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 1.8e-12 78.6 204 32.4
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 1.8e-12 78.6 606 26.2
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 1.8e-12 78.6 170 40.6
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 2.4e-12 78.2 331 28.4
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 3.1e-12 77.8 572 25.2
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 3.1e-12 77.8 300 32.3
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 3.1e-12 77.8 589 26.1
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 3.1e-12 77.8 283 31.1
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 4.1e-12 77.4 217 33.2
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 5.3e-12 77.0 609 25.0
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 5.3e-12 77.0 284 31.3
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 6.9e-12 76.6 290 34.5
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 9.0e-12 76.3 569 25.0
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 1.2e-11 75.9 314 31.2
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.2e-11 75.9 283 31.4
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 1.5e-11 75.5 324 29.3
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 1.5e-11 75.5 282 28.7
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 2.0e-11 75.1 308 28.9
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 2.0e-11 75.1 305 28.9
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 2.6e-11 74.7 318 29.2
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 3.4e-11 74.3 123 42.3
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 3.4e-11 74.3 39 92.3
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 3.4e-11 74.3 317 29.3
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 4.5e-11 73.9 323 29.7
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 5.9e-11 73.6 340 29.7
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 7.7e-11 73.2 308 28.6
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 7.7e-11 73.2 315 30.8
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.3e-10 72.4 282 30.1
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.7e-10 72.0 127 43.3
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.7e-10 72.0 309 28.5
Lsat_1_v5_gn_4_37260 Lactuca sativa HOM05D004299 ORTHO05D003557 1.7e-10 72.0 185 35.1
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 2.2e-10 71.6 82 50.0
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.9e-10 71.2 273 29.7
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 3.8e-10 70.9 310 29.0
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 4.2e-09 67.4 321 29.9
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 4.2e-09 67.4 264 30.7
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 5.5e-09 67.0 293 30.0
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 5.5e-09 67.0 293 30.0
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 7.2e-09 66.6 336 27.7
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 7.2e-09 66.6 262 28.2
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.6e-08 65.5 329 28.3
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.7e-08 64.7 270 30.7
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 2.7e-08 64.7 329 28.6
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 4.6e-08 63.9 36 86.1
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 4.6e-08 63.9 36 86.1
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 6.1e-08 63.5 381 28.6
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 1.4e-07 62.4 346 27.7
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 1.8e-07 62.0 260 30.0
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 2.3e-07 61.6 311 29.9
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 2.3e-07 61.6 311 29.9
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 2.3e-07 61.6 614 26.7
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 2.3e-07 61.6 70 51.4
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 3.0e-07 61.2 44 65.9
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 5.1e-07 60.5 115 40.9
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 6.7e-07 60.1 39 71.8
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 6.7e-07 60.1 318 28.6
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 8.8e-07 59.7 239 30.5
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 8.8e-07 59.7 248 30.2
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.1e-06 59.3 76 44.7
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 1.5e-06 58.9 322 30.1
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 2.0e-06 58.5 547 29.8
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 2.0e-06 58.5 328 30.8
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 3.3e-06 57.8 304 28.0
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 4.3e-06 57.4 243 29.6
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 4.3e-06 57.4 313 26.8
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 9.7e-06 56.2 546 25.3


User provided reference genes

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