Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G1906 Erigeron canadensis HOM05D007212 ORTHO05D009094 1.1e-40 172.6 114 100.0
Lsat_1_v5_gn_9_22380 Lactuca sativa HOM05D007212 ORTHO05D009094 8.3e-20 103.2 67 67.2
HanXRQChr08g0227881 Helianthus annuus HOM05D007212 ORTHO05D009094 1.9e-19 102.1 117 50.4
Migut.G01107 Erythranthe guttata HOM05D007212 ORTHO05D009094 8.9e-14 83.2 120 42.5
Migut.G01143 Erythranthe guttata HOM05D007212 ORTHO05D009094 3.4e-13 81.3 69 58.0
Migut.D02115 Erythranthe guttata HOM05D007212 ORTHO05D009094 9.9e-13 79.7 75 54.7
Cfa011459 Carpinus fangiana HOM05D007212 ORTHO05D009094 3.8e-12 77.8 72 54.2
Haze_24045 Corylus avellana HOM05D007212 ORTHO05D009094 4.9e-12 77.4 72 54.2
SalBow3G0436 Salvia bowleyana HOM05D007212 ORTHO05D009094 1.9e-11 75.5 68 54.4
Nitab4.5_0003782g0040 Nicotiana tabacum HOM05D007212 ORTHO05D009094 2.4e-11 75.1 72 50.0
PSO339G3988 Papaver somniferum HOM05D007212 ORTHO05D009094 3.2e-11 74.7 73 46.6
Sed0018920 Sechium edule HOM05D007212 ORTHO05D009094 4.2e-11 74.3 73 43.8
DCAR_015608 Daucus carota HOM05D007212 ORTHO05D009094 1.2e-10 72.8 68 50.0
GSVIVG01025017001 Vitis vinifera HOM05D007212 ORTHO05D009094 1.6e-10 72.4 43 76.7
Potri.001G236800 Populus trichocarpa HOM05D007212 ORTHO05D009094 3.5e-10 71.2 115 36.5
Cpa.g.sc190.19 Carica papaya HOM05D007212 ORTHO05D009094 6.0e-10 70.5 73 47.9
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 6.0e-10 70.5 65 47.7
Sabra16G0142600 Salix brachista HOM05D007212 ORTHO05D009094 6.0e-10 70.5 73 46.6
Dinv32867 Davidia involucrata HOM05D007212 ORTHO05D009094 7.8e-10 70.1 43 72.1
QL01p032998 Quercus lobata HOM05D007212 ORTHO05D009094 1.3e-09 69.3 43 72.1
CSS0026864 Camellia sinensis var. sinensis HOM05D007212 ORTHO05D009094 1.7e-09 68.9 43 72.1
CDE09G0292 Ceratophyllum demersum HOM05D007212 ORTHO05D009094 2.3e-09 68.6 72 44.4
Gohir.A03G039400 Gossypium hirsutum HOM05D007212 ORTHO05D009094 3.9e-09 67.8 64 48.4
Gohir.D03G128800 Gossypium hirsutum HOM05D007212 ORTHO05D009094 5.1e-09 67.4 65 47.7
Gorai.003G135500 Gossypium raimondii HOM05D007212 ORTHO05D009094 5.1e-09 67.4 65 47.7
Thecc.09G326300 Theobroma cacao HOM05D007212 ORTHO05D009094 5.1e-09 67.4 43 72.1
CiPaw.14G071200 Carya illinoinensis HOM05D007212 ORTHO05D009094 8.7e-09 66.6 68 47.1
vmacro03100 Vaccinium macrocarpon HOM05D007212 ORTHO05D009094 8.7e-09 66.6 43 69.8
arahy.Tifrunner.gnm1.ann1.C93D89 Arachis hypogaea HOM05D007212 ORTHO05D009094 1.5e-08 65.9 66 50.0
FAN16G0386 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.5e-08 65.9 69 44.9
Oeu041026.1 Olea europaea HOM05D007212 ORTHO05D009094 1.5e-08 65.9 68 42.6
Psat7g177640 Pisum sativum HOM05D007212 ORTHO05D009094 1.5e-08 65.9 43 72.1
TWI79G1118 Tripterygium wilfordii HOM05D007212 ORTHO05D009094 1.5e-08 65.9 43 67.4
Cpa.g.sc190.20 Carica papaya HOM05D007212 ORTHO05D009094 1.9e-08 65.5 43 67.4
FvH4_3g35360 Fragaria vesca HOM05D007212 ORTHO05D009094 1.9e-08 65.5 67 44.8
FAN03G3455 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.9e-08 65.5 67 44.8
FAN11G2747 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.9e-08 65.5 67 44.8
FAN21G0605 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.9e-08 65.5 67 44.8
FAN21G2645 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.9e-08 65.5 67 44.8
FAN27G2961 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.9e-08 65.5 67 44.8
FAN28G1733 Fragaria x ananassa HOM05D007212 ORTHO05D009094 1.9e-08 65.5 67 44.8
Glyma.11G098900 Glycine max HOM05D007212 ORTHO05D009094 1.9e-08 65.5 43 67.4
Lj3g0025740 Lotus japonicus HOM05D007212 ORTHO05D009094 1.9e-08 65.5 43 69.8
Lalb_Chr01g0001381 Lupinus albus HOM05D007212 ORTHO05D009094 1.9e-08 65.5 42 69.0
Phvul.011G027200 Phaseolus vulgaris HOM05D007212 ORTHO05D009094 1.9e-08 65.5 43 67.4
Sc09g0001880 Simmondsia chinensis HOM05D007212 ORTHO05D009094 1.9e-08 65.5 70 45.7
VMungo1127G0797 Vigna mungo HOM05D007212 ORTHO05D009094 2.5e-08 65.1 43 67.4
arahy.Tifrunner.gnm1.ann1.0V2A2H Arachis hypogaea HOM05D007212 ORTHO05D009094 3.3e-08 64.7 66 48.5
Ca_19008_v3 Cicer arietinum L. HOM05D007212 ORTHO05D009094 3.3e-08 64.7 43 72.1
Prupe.6G082100 Prunus persica HOM05D007212 ORTHO05D009094 3.3e-08 64.7 67 41.8
PGR119G1050 Punica granatum HOM05D007212 ORTHO05D009094 3.3e-08 64.7 43 69.8
PGR142G1175 Punica granatum HOM05D007212 ORTHO05D009094 3.3e-08 64.7 43 69.8
Eucgr.J02064 Eucalyptus grandis HOM05D007212 ORTHO05D009094 4.3e-08 64.3 72 45.8
FAN21G3687 Fragaria x ananassa HOM05D007212 ORTHO05D009094 4.3e-08 64.3 69 43.5
Medtr4g075270 Medicago truncatula HOM05D007212 ORTHO05D009094 4.3e-08 64.3 58 53.4
Glyma.12G024900 Glycine max HOM05D007212 ORTHO05D009094 9.6e-08 63.2 43 65.1
ATR0580G451 Amborella trichopoda HOM05D007212 ORTHO05D009094 1.3e-07 62.8 64 43.8
EL10Ac6g14029 Beta vulgaris HOM05D007212 ORTHO05D009094 1.6e-07 62.4 43 62.8
Lj1A206G45 Lonicera japonica HOM05D007212 ORTHO05D009094 2.1e-07 62.0 34 79.4
AUR62040786 Chenopodium quinoa HOM05D001653 ORTHO05D001751 2.8e-07 61.6 66 42.4
Actinidia07048 Actinidia chinensis HOM05D007212 ORTHO05D009094 3.6e-07 61.2 43 65.1
Ah.02g128350 Amaranthus hybridus HOM05D007212 ORTHO05D009094 3.6e-07 61.2 43 62.8
TPR.G17150 Trifolium pratense HOM05D007212 ORTHO05D009094 3.6e-07 61.2 66 48.5
MSTRG.21188 Avicennia marina HOM05D007212 ORTHO05D009094 4.8e-07 60.8 41 65.9
AL8G36470 Arabidopsis lyrata HOM05D007212 ORTHO05D009094 8.1e-07 60.1 43 55.8
AT5G59900 Arabidopsis thaliana HOM05D007212 ORTHO05D009094 8.1e-07 60.1 43 55.8
Manes.01G128700 Manihot esculenta HOM05D007212 ORTHO05D009094 1.1e-06 59.7 43 60.5
Aqoxy4G02992 Aquilegia oxysepala HOM05D007212 ORTHO05D009094 1.4e-06 59.3 41 65.9
BcaB08g36211 Brassica carinata HOM05D007212 ORTHO05D009094 1.4e-06 59.3 43 58.1
Solyc11g073270.1 Solanum lycopersicum HOM05D007212 ORTHO05D009094 1.4e-06 59.3 43 58.1
Sopen11g030900 Solanum pennellii HOM05D007212 ORTHO05D009094 1.4e-06 59.3 43 58.1
CAN.G764.6 Capsicum annuum HOM05D007212 ORTHO05D009094 2.4e-06 58.5 43 55.8
THA.LOC104814860 Tarenaya hassleriana HOM05D007212 ORTHO05D009094 2.4e-06 58.5 42 59.5
Atru.chr3.3834 Acer truncatum HOM05D007212 ORTHO05D009094 3.1e-06 58.2 34 76.5
BcaC04g19649 Brassica carinata HOM05D007212 ORTHO05D009094 3.1e-06 58.2 43 55.8
C09p52430 Brassica napus HOM05D007212 ORTHO05D009094 3.1e-06 58.2 43 55.8
BolC9t58111H Brassica oleracea HOM05D007212 ORTHO05D009094 3.1e-06 58.2 43 55.8
MBI05_g28547_MAGBIO Magnolia biondii HOM05D007212 ORTHO05D009094 3.1e-06 58.2 42 61.9
Thhalv10016210m.g Eutrema salsugineum HOM05D007212 ORTHO05D009094 5.3e-06 57.4 43 53.5
RcHm_v2.0_Chr5g0063471 Rosa chinensis HOM05D007212 ORTHO05D009094 5.3e-06 57.4 37 67.6
HPP92_021332 Vanilla planifolia HOM05D007212 ORTHO05D000003 9.0e-06 56.6 43 55.8


User provided reference genes

Program Settings