Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.2e-93 346.7 191 100.0
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 2.0e-53 213.0 186 68.8
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 7.4e-48 194.5 187 63.1
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 1.3e-47 193.7 175 66.3
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 8.2e-47 191.0 185 61.6
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 7.6e-45 184.5 181 61.3
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 3.9e-41 172.2 163 60.1
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 6.7e-41 171.4 188 57.4
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 6.7e-41 171.4 160 60.6
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 7.4e-40 167.9 185 55.1
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 1.6e-39 166.8 185 56.8
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 4.8e-39 165.2 163 55.8
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 6.3e-39 164.9 185 54.1
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 8.2e-39 164.5 163 56.4
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 8.2e-39 164.5 163 56.4
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 1.4e-38 163.7 174 53.4
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 9.1e-38 161.0 188 50.0
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 2.0e-37 159.8 163 57.7
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 2.0e-37 159.8 174 52.9
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 3.4e-37 159.1 163 57.7
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 4.5e-37 158.7 161 57.8
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 4.5e-37 158.7 168 54.2
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 1.0e-36 157.5 190 54.7
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 2.9e-36 156.0 162 56.8
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 2.9e-36 156.0 190 54.2
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 2.9e-36 156.0 162 55.6
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 2.5e-35 152.9 190 53.7
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 2.7e-34 149.4 172 55.2
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 3.6e-34 149.1 156 54.5
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 6.1e-34 148.3 163 53.4
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 6.1e-34 148.3 186 51.6
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 7.9e-34 147.9 163 54.6
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 7.9e-34 147.9 244 46.3
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 5.1e-33 145.2 163 55.2
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 6.7e-33 144.8 149 55.7
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 1.1e-32 144.1 155 52.9
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 2.6e-32 142.9 171 52.0
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 4.4e-32 142.1 158 53.2
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 4.4e-32 142.1 161 53.4
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 4.4e-32 142.1 163 54.6
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 5.7e-32 141.7 162 51.9
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 7.4e-32 141.4 163 54.0
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 7.4e-32 141.4 148 56.8
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 1.3e-31 140.6 158 52.5
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 1.7e-31 140.2 182 48.4
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.2e-31 139.8 157 52.2
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 2.2e-31 139.8 148 56.1
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.8e-31 139.4 163 52.8
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 2.8e-31 139.4 162 51.9
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 4.8e-31 138.7 162 51.9
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 6.3e-31 138.3 163 53.4
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 8.2e-31 137.9 168 48.2
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 1.8e-30 136.7 163 52.8
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 1.8e-30 136.7 180 49.4
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 2.4e-30 136.3 166 50.6
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 4.1e-30 135.6 176 50.0
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 5.3e-30 135.2 190 50.5
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 6.9e-30 134.8 181 47.0
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 6.9e-30 134.8 182 46.7
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 6.9e-30 134.8 182 46.7
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 6.9e-30 134.8 182 47.3
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 1.5e-29 133.7 163 50.3
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 2.6e-29 132.9 161 49.7
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 3.4e-29 132.5 190 50.5
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 3.4e-29 132.5 166 51.2
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 4.5e-29 132.1 164 49.4
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 4.5e-29 132.1 164 49.4
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 4.5e-29 132.1 255 42.0
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 5.9e-29 131.7 154 51.3
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 7.7e-29 131.3 168 46.4
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 3.8e-28 129.0 181 50.3
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 8.5e-28 127.9 170 47.1
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 1.9e-27 126.7 145 50.3
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 5.5e-27 125.2 184 45.7
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 9.4e-27 124.4 184 45.7
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 1.2e-26 124.0 163 48.5
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 1.2e-26 124.0 152 50.0
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 1.2e-26 124.0 166 47.0
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 1.6e-26 123.6 154 49.4
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 1.6e-26 123.6 192 42.2
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.6e-26 122.5 174 44.3
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 3.6e-26 122.5 174 44.3
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 1.0e-25 120.9 166 45.8
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 1.8e-25 120.2 151 53.0
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 5.2e-25 118.6 144 54.9
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 1.1e-24 117.5 145 46.9
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 2.0e-24 116.7 162 46.9
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 1.7e-23 113.6 154 46.8
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 2.2e-23 113.2 184 43.5
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 2.8e-23 112.8 155 47.1
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 3.7e-23 112.5 157 45.9
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 3.7e-23 112.5 164 45.7
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 4.8e-23 112.1 190 45.8
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 1.4e-22 110.5 163 46.6
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 2.4e-22 109.8 145 45.5
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 3.1e-22 109.4 97 67.0
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 5.3e-22 108.6 193 40.9
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 7.0e-22 108.2 164 44.5
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 7.0e-22 108.2 163 42.9
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 2.0e-21 106.7 154 49.4
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 2.6e-21 106.3 171 43.9
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 4.5e-21 105.5 166 44.6
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 8.5e-20 101.3 149 47.0
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 8.5e-20 101.3 149 47.0
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 1.5e-19 100.5 166 43.4
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 2.5e-19 99.8 187 42.2
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 1.2e-18 97.4 120 48.3
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 1.6e-18 97.1 143 46.2
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 2.7e-18 96.3 157 39.5
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 8.0e-18 94.7 117 53.0
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 1.4e-17 94.0 136 43.4
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 1.8e-17 93.6 185 40.5
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.8e-17 93.6 180 38.3
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 1.8e-17 93.6 185 43.8
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 1.8e-17 93.6 163 43.6
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 3.0e-17 92.8 179 41.3
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 2.6e-16 89.7 163 39.9
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 3.3e-16 89.4 173 42.8
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 3.3e-16 89.4 173 42.8
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 1.1e-14 84.3 169 38.5
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 1.1e-14 84.3 144 36.8
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 9.1e-14 81.3 170 38.8
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 9.1e-14 81.3 163 38.0
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 1.2e-13 80.9 100 54.0
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 6.5e-12 75.1 175 36.6
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 1.5e-11 73.9 83 53.0
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 3.2e-11 72.8 118 41.5
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 9.4e-11 71.2 172 36.0
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 1.2e-10 70.9 163 36.8
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 8.0e-10 68.2 75 46.7
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 1.8e-09 67.0 155 39.4
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.8e-09 67.0 155 39.4
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 4.0e-09 65.9 100 50.0
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 5.7e-08 62.0 100 48.0
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 2.8e-07 59.7 58 55.2
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 6.3e-07 58.5 163 32.5
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 1.4e-06 57.4 48 58.3
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.8e-06 57.0 46 76.1
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 3.1e-06 56.2 163 32.5
arahy.Tifrunner.gnm1.ann1.I6PPQF Arachis hypogaea HOM05D000877 ORTHO05D026902 7.0e-06 55.1 73 46.6
arahy.Tifrunner.gnm1.ann1.57E4K5 Arachis hypogaea HOM05D000877 ORTHO05D026902 9.1e-06 54.7 73 46.6


User provided reference genes

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