Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G1470 Erigeron canadensis HOM05D006880 ORTHO05D008638 6.1e-103 377.5 189 100.0
HanXRQChr02g0039401 Helianthus annuus HOM05D006880 ORTHO05D008638 3.8e-97 358.2 189 93.7
PSO675G8574 Papaver somniferum HOM05D006880 ORTHO05D008638 7.0e-83 310.8 189 82.5
Oeu054906.1 Olea europaea HOM05D006880 ORTHO05D008638 2.0e-82 309.3 196 80.6
PSO541G1054 Papaver somniferum HOM05D006880 ORTHO05D008638 3.5e-82 308.5 189 82.0
Cc07_g17330 Coffea canephora HOM05D006880 ORTHO05D008638 2.9e-81 305.4 196 79.1
TAR628G0678 Trochodendron aralioides HOM05D006880 ORTHO05D008638 7.2e-80 300.8 194 78.9
SGA_v2.0_scaffold178G39501 Striga asiatica HOM05D006880 ORTHO05D008638 2.1e-79 299.3 203 76.8
Nn1g06089 Nelumbo nucifera HOM05D006880 ORTHO05D008638 2.8e-79 298.9 189 79.9
RcHm_v2.0_Chr2g0119191 Rosa chinensis HOM05D006880 ORTHO05D008638 3.6e-79 298.5 191 79.1
Aqoxy5G02095 Aquilegia oxysepala HOM05D006880 ORTHO05D008638 4.7e-79 298.1 188 80.9
FvH4_1g23610 Fragaria vesca HOM05D006880 ORTHO05D008638 4.7e-79 298.1 191 79.1
FAN28G1236 Fragaria x ananassa HOM05D006880 ORTHO05D008638 4.7e-79 298.1 191 79.1
FAN19G0460 Fragaria x ananassa HOM05D006880 ORTHO05D008638 6.1e-79 297.7 191 79.1
Hma1.2p1_0006F.1_g004965 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 6.1e-79 297.7 177 84.7
Hma1.2p1_0025F.1_g016260 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 6.1e-79 297.7 177 84.7
Hma1.2p1_1667F.1_g296585 Hydrangea macrophylla HOM05D006880 ORTHO05D008638 6.1e-79 297.7 177 84.7
CiPaw.03G123600 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.4e-78 296.6 198 75.3
FAN23G3120 Fragaria x ananassa HOM05D006880 ORTHO05D008638 1.4e-78 296.6 191 79.1
CiPaw.04G083800 Carya illinoinensis HOM05D006880 ORTHO05D008638 1.8e-78 296.2 193 76.2
FAN26G3452 Fragaria x ananassa HOM05D006880 ORTHO05D008638 2.3e-78 295.8 191 78.5
Lj2A591T43 Lonicera japonica HOM05D006880 ORTHO05D008638 2.3e-78 295.8 193 79.3
Prupe.6G162500 Prunus persica HOM05D006880 ORTHO05D008638 4.0e-78 295.0 191 77.0
Actinidia06675 Actinidia chinensis HOM05D006880 ORTHO05D008638 5.2e-78 294.7 193 76.2
TWI79G0189 Tripterygium wilfordii HOM05D006880 ORTHO05D008638 6.8e-78 294.3 191 77.0
Migut.H01108 Erythranthe guttata HOM05D006880 ORTHO05D008638 8.9e-78 293.9 199 77.4
Solyc11g005390.3 Solanum lycopersicum HOM05D006880 ORTHO05D008638 3.4e-77 292.0 193 73.6
Sopen11g001400 Solanum pennellii HOM05D006880 ORTHO05D008638 3.4e-77 292.0 193 73.6
Glyma.09G116700 Glycine max HOM05D006880 ORTHO05D008638 4.4e-77 291.6 189 76.2
Gohir.A10G083300 Gossypium hirsutum HOM05D006880 ORTHO05D008638 5.7e-77 291.2 189 77.8
Gohir.D10G105600 Gossypium hirsutum HOM05D006880 ORTHO05D008638 5.7e-77 291.2 189 77.8
QL06p051802 Quercus lobata HOM05D006880 ORTHO05D008638 7.5e-77 290.8 194 77.8
Cpa.g.sc453.1 Carica papaya HOM05D006880 ORTHO05D008638 2.2e-76 289.3 197 74.6
HanXRQChr05g0137731 Helianthus annuus HOM05D006880 ORTHO05D008638 2.2e-76 289.3 190 77.4
PGSC0003DMG400003965 Solanum tuberosum HOM05D006880 ORTHO05D008638 3.7e-76 288.5 182 76.4
Gorai.011G115200 Gossypium raimondii HOM05D006880 ORTHO05D008638 4.9e-76 288.1 189 77.2
Phvul.009G147400 Phaseolus vulgaris HOM05D006880 ORTHO05D008638 8.3e-76 287.3 198 72.7
TPR.G18722 Trifolium pratense HOM05D006880 ORTHO05D008638 8.3e-76 287.3 194 74.7
CANSAT01G0776 Cannabis sativa HOM05D006880 ORTHO05D008638 2.4e-75 285.8 196 75.5
Lj1g0010031 Lotus japonicus HOM05D006880 ORTHO05D008638 2.4e-75 285.8 190 74.7
Lalb_Chr08g0238661 Lupinus albus HOM05D006880 ORTHO05D008638 3.1e-75 285.4 189 73.5
CSS0034618 Camellia sinensis var. sinensis HOM05D006880 ORTHO05D008638 4.1e-75 285.0 194 77.8
Duzib147G0678 Durio zibethinus HOM05D006880 ORTHO05D008638 4.1e-75 285.0 195 74.9
Glyma.06G149800 Glycine max HOM05D006880 ORTHO05D008638 4.1e-75 285.0 193 74.6
Glyma.09G116500 Glycine max HOM05D006880 ORTHO05D008638 4.1e-75 285.0 192 75.5
Lalb_Chr11g0068241 Lupinus albus HOM05D006880 ORTHO05D008638 9.2e-75 283.9 194 73.7
GSVIVG01026589001 Vitis vinifera HOM05D006880 ORTHO05D008638 9.2e-75 283.9 169 85.2
Psat5g063920 Pisum sativum HOM05D006880 ORTHO05D008638 1.2e-74 283.5 193 73.6
CDE08G0745 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 1.6e-74 283.1 189 74.6
Gorai.002G151100 Gossypium raimondii HOM05D006880 ORTHO05D008638 1.6e-74 283.1 193 74.1
Thecc.01G120600 Theobroma cacao HOM05D006880 ORTHO05D008638 2.0e-74 282.7 196 73.5
Ca_16914_v3 Cicer arietinum L. HOM05D006880 ORTHO05D008638 2.7e-74 282.3 192 74.0
Potri.019G006500 Populus trichocarpa HOM05D006880 ORTHO05D008638 5.9e-74 281.2 196 73.5
COL.COLO4_22415 Corchorus olitorius HOM05D006880 ORTHO05D008638 1.7e-73 279.6 196 73.0
Duzib187G0911 Durio zibethinus HOM05D006880 ORTHO05D008638 1.7e-73 279.6 193 74.1
Atru.chr4.544 Acer truncatum HOM05D006880 ORTHO05D008638 2.9e-73 278.9 196 74.0
Manes.12G148400 Manihot esculenta HOM05D006880 ORTHO05D008638 2.9e-73 278.9 202 72.3
arahy.Tifrunner.gnm1.ann1.546D2B Arachis hypogaea HOM05D006880 ORTHO05D008638 5.0e-73 278.1 190 74.7
Sabra16G0194800 Salix brachista HOM05D006880 ORTHO05D008638 1.1e-72 276.9 199 72.4
ClCG01G015680 Citrullus lanatus HOM05D006880 ORTHO05D008638 1.5e-72 276.6 191 71.2
Medtr3g095480 Medicago truncatula HOM05D006880 ORTHO05D008638 1.5e-72 276.6 195 71.3
Sabra19G0023300 Salix brachista HOM05D006880 ORTHO05D008638 2.5e-72 275.8 195 71.3
arahy.Tifrunner.gnm1.ann1.91R8ME Arachis hypogaea HOM05D006880 ORTHO05D008638 3.3e-72 275.4 190 72.1
MBI02_g23402_MAGBIO Magnolia biondii HOM05D006880 ORTHO05D008638 3.3e-72 275.4 177 77.4
Potri.001G309000 Populus trichocarpa HOM05D006880 ORTHO05D008638 3.3e-72 275.4 201 70.6
MELO3C008029.2 Cucumis melo HOM05D006880 ORTHO05D008638 2.1e-71 272.7 189 71.4
Sabra19G0018800 Salix brachista HOM05D006880 ORTHO05D008638 2.8e-71 272.3 195 70.8
Ciclev10026534m.g Citrus clementina HOM05D006880 ORTHO05D008638 4.7e-71 271.6 201 70.6
MD01G1016600 Malus domestica HOM05D006880 ORTHO05D008638 2.0e-69 266.2 196 73.0
PGR119G1657 Punica granatum HOM05D006880 ORTHO05D008638 5.8e-69 264.6 193 73.1
AUR62017937 Chenopodium quinoa HOM05D006880 ORTHO05D008638 7.5e-69 264.2 205 69.3
HPP92_025026 Vanilla planifolia HOM05D006880 ORTHO05D008638 4.9e-68 261.5 186 69.9
HPP92_025033 Vanilla planifolia HOM05D006880 ORTHO05D008638 4.9e-68 261.5 186 69.9
Aa31LG8G5640 Aethionema arabicum HOM05D006880 ORTHO05D008638 6.4e-68 261.2 201 70.6
THA.LOC104821864 Tarenaya hassleriana HOM05D006880 ORTHO05D008638 1.9e-67 259.6 179 74.9
Sc03g0004730 Simmondsia chinensis HOM05D006880 ORTHO05D008638 5.4e-67 258.1 189 68.8
ATR0772G040 Amborella trichopoda HOM05D006880 ORTHO05D008638 2.0e-66 256.1 187 70.6
Carub.0003s1862 Capsella rubella HOM05D006880 ORTHO05D008638 3.5e-66 255.4 198 69.2
Nn5g28731 Nelumbo nucifera HOM05D006880 ORTHO05D008638 1.3e-65 253.4 175 73.1
Sp3g16890 Schrenkiella parvula HOM05D006880 ORTHO05D008638 1.3e-65 253.4 205 65.9
BcaC02g12236 Brassica carinata HOM05D006880 ORTHO05D008638 2.3e-65 252.7 201 68.2
BcaC05g28570 Brassica carinata HOM05D006880 ORTHO05D008638 2.3e-65 252.7 201 68.2
C05p46720 Brassica napus HOM05D006880 ORTHO05D008638 2.3e-65 252.7 201 68.2
BolC5t33399H Brassica oleracea HOM05D006880 ORTHO05D008638 2.3e-65 252.7 201 68.2
AL3G32180 Arabidopsis lyrata HOM05D006880 ORTHO05D008638 3.9e-65 251.9 198 68.2
CARHR094210 Cardamine hirsuta HOM05D006880 ORTHO05D008638 6.6e-65 251.1 203 66.0
Sp1g36150 Schrenkiella parvula HOM05D006880 ORTHO05D008638 8.6e-65 250.8 202 67.8
Dinv09943 Davidia involucrata HOM05D006880 ORTHO05D008638 1.5e-64 250.0 174 75.3
AT3G18800 Arabidopsis thaliana HOM05D006880 ORTHO05D008638 1.9e-64 249.6 198 66.7
BcaB06g25933 Brassica carinata HOM05D006880 ORTHO05D008638 3.3e-64 248.8 202 65.8
A05p30800 Brassica napus HOM05D006880 ORTHO05D008638 4.3e-64 248.4 204 65.7
BraA05t21922Z Brassica rapa HOM05D006880 ORTHO05D008638 4.3e-64 248.4 204 65.7
Sed0021560 Sechium edule HOM05D006880 ORTHO05D008638 1.2e-63 246.9 173 69.9
Gohir.D11G233000 Gossypium hirsutum HOM05D006880 ORTHO05D008638 2.3e-62 242.7 195 65.6
CDE06G1704 Ceratophyllum demersum HOM05D006880 ORTHO05D008638 3.4e-61 238.8 149 76.5
Peaxi162Scf00025g02313 Petunia axillaris HOM05D006880 ORTHO05D008638 3.4e-61 238.8 168 71.4
Thhalv10022284m.g Eutrema salsugineum HOM05D006880 ORTHO05D008638 3.7e-60 235.3 204 63.7
CsaV3_6G041940 Cucumis sativus L. HOM05D006880 ORTHO05D008638 5.6e-56 221.5 151 72.2
BcaC07g37070 Brassica carinata HOM05D006880 ORTHO05D008638 2.1e-50 203.0 191 62.8
Mapoly0012s0135 Marchantia polymorpha HOM05D006880 ORTHO05D008638 2.3e-49 199.5 177 56.5
SMO351G0309 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 2.8e-47 192.6 186 51.6
A08p04110 Brassica napus HOM05D006880 ORTHO05D008638 8.9e-46 187.6 147 68.0
AagrBONN_evm.TU.Sc2ySwM_228.250 Anthoceros agrestis HOM05D006880 ORTHO05D008638 5.4e-43 178.3 175 50.9
SMO196G0105 Selaginella moellendorffii HOM05D006880 ORTHO05D008638 2.7e-42 176.0 176 50.0
Nn3g21133 Nelumbo nucifera HOM05D006880 ORTHO05D008638 3.5e-42 175.6 176 55.7
Nitab4.5_0011433g0020 Nicotiana tabacum HOM05D006880 ORTHO05D008638 3.0e-41 172.6 108 75.0
Nitab4.5_0023130g0010 Nicotiana tabacum HOM05D006880 ORTHO05D008638 5.6e-40 168.3 108 73.1
DCAR_016722 Daucus carota HOM05D006880 ORTHO05D008638 2.4e-35 152.9 101 74.3
Nn8g40983 Nelumbo nucifera HOM05D006880 ORTHO05D008638 8.7e-33 144.4 173 50.9
Os04g0687200 Oryza sativa ssp. japonica HOM05D006880 ORTHO05D008638 1.6e-31 140.2 122 54.9
Eucgr.B01306 Eucalyptus grandis HOM05D006880 ORTHO05D008638 3.7e-23 112.5 131 50.4
Lj6g0028046 Lotus japonicus HOM05D006880 ORTHO05D008638 2.2e-20 103.2 66 75.8
Nn3g19205 Nelumbo nucifera HOM05D006880 ORTHO05D008638 5.3e-14 82.0 66 65.2
Eucgr.B00961 Eucalyptus grandis HOM05D006880 ORTHO05D008638 7.1e-11 71.6 46 78.3
BraA08t32436Z Brassica rapa HOM05D006880 ORTHO05D008638 6.1e-10 68.6 51 72.5
Nn8g39713 Nelumbo nucifera HOM05D006880 ORTHO05D008638 2.4e-06 56.6 33 78.8


User provided reference genes

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