Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G1423 Erigeron canadensis HOM05D004875 ORTHO05D005598 0.0e+00 1969.1 1003 100.0
HanXRQChr08g0228771 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1612.0 1003 81.7
HanXRQChr13g0386431 Helianthus annuus HOM05D004875 ORTHO05D005598 0.0e+00 1567.4 1001 80.0
Lsat_1_v5_gn_9_14720 Lactuca sativa HOM05D004875 ORTHO05D005598 0.0e+00 1518.4 1012 77.3
CSS0009670 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1333.2 1005 67.6
Hma1.2p1_1692F.1_g297880 Hydrangea macrophylla HOM05D004875 ORTHO05D005598 0.0e+00 1309.3 1006 66.5
CSS0036828 Camellia sinensis var. sinensis HOM05D004875 ORTHO05D005598 0.0e+00 1308.9 994 66.6
Cc01_g14850 Coffea canephora HOM05D004875 ORTHO05D000053 0.0e+00 1291.6 985 66.6
QL01p026245 Quercus lobata HOM05D004875 ORTHO05D005598 0.0e+00 1288.1 1007 65.2
Potri.013G152800 Populus trichocarpa HOM05D004875 ORTHO05D005598 0.0e+00 1276.9 1006 65.0
MD11G1058300 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1271.9 1009 64.8
MD03G1056500 Malus domestica HOM05D004875 ORTHO05D005598 0.0e+00 1269.2 1006 64.6
TAR633G2039 Trochodendron aralioides HOM05D004875 ORTHO05D005598 0.0e+00 1267.7 1007 65.4
RcHm_v2.0_Chr5g0071641 Rosa chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1259.6 1005 64.3
Thecc.09G357800 Theobroma cacao HOM05D004875 ORTHO05D005598 0.0e+00 1259.2 1006 63.8
vmacro02918 Vaccinium macrocarpon HOM05D004875 ORTHO05D005598 0.0e+00 1258.0 1059 61.8
FvH4_3g39760 Fragaria vesca HOM05D004875 ORTHO05D005598 0.0e+00 1257.7 1006 63.6
Lj1C127G1 Lonicera japonica HOM05D004875 ORTHO05D005598 0.0e+00 1257.3 1015 64.5
Cfa011778 Carpinus fangiana HOM05D004875 ORTHO05D005598 0.0e+00 1256.9 1009 64.5
FAN11G0831 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1255.0 1006 63.5
FAN21G2306 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1253.8 1012 63.5
DCAR_018231 Daucus carota HOM05D004875 ORTHO05D005598 0.0e+00 1252.7 1007 63.1
SalBow2G1321 Salvia bowleyana HOM05D004875 ORTHO05D005598 0.0e+00 1252.7 1008 64.0
Prupe.6G048400 Prunus persica HOM05D004875 ORTHO05D005598 0.0e+00 1249.6 981 64.8
SGA_v2.0_scaffold146G36120 Striga asiatica HOM05D004875 ORTHO05D005598 0.0e+00 1249.2 1008 63.3
CiPaw.13G069200 Carya illinoinensis HOM05D004875 ORTHO05D005598 0.0e+00 1246.9 1007 64.0
FAN16G0994 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1246.1 992 63.8
Manes.02G211800 Manihot esculenta HOM05D004875 ORTHO05D005598 0.0e+00 1243.0 1009 63.0
Gorai.009G113500 Gossypium raimondii HOM05D004875 ORTHO05D005598 0.0e+00 1239.2 1007 63.4
FAN25G2145 Fragaria x ananassa HOM05D004875 ORTHO05D005598 0.0e+00 1237.6 992 63.3
Haze_24411 Corylus avellana HOM05D004875 ORTHO05D005598 0.0e+00 1234.6 1071 61.2
MSTRG.12688 Avicennia marina HOM05D004875 ORTHO05D005598 0.0e+00 1234.2 1010 63.2
GSVIVG01024634001 Vitis vinifera HOM05D004875 ORTHO05D005598 0.0e+00 1232.2 984 64.3
Sopen09g013270 Solanum pennellii HOM05D004875 ORTHO05D005598 0.0e+00 1231.5 1007 62.1
COL.COLO4_11154 Corchorus olitorius HOM05D004875 ORTHO05D005598 0.0e+00 1230.3 1005 62.8
Rhsim13G0064100 Rhododendron simsii HOM05D004875 ORTHO05D005598 0.0e+00 1228.4 1028 62.1
CANSAT54G1540 Cannabis sativa HOM05D004875 ORTHO05D005598 0.0e+00 1225.7 1007 63.3
Ciclev10030286m.g Citrus clementina HOM05D004875 ORTHO05D005598 0.0e+00 1219.5 1006 63.0
Actinidia23196 Actinidia chinensis HOM05D004875 ORTHO05D005598 0.0e+00 1209.1 1002 61.9
Duzib168G1610 Durio zibethinus HOM05D004875 ORTHO05D005598 0.0e+00 1198.7 1006 61.4
Aqoxy1G01286 Aquilegia oxysepala HOM05D004875 ORTHO05D005598 0.0e+00 1195.6 1007 61.3
Sed0004894 Sechium edule HOM05D004875 ORTHO05D005598 0.0e+00 1183.7 1007 60.3
Sabra13G0122800 Salix brachista HOM05D004875 ORTHO05D005598 0.0e+00 1181.8 1070 58.7
TWI31G0826 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1180.6 1008 60.8
Lalb_Chr20g0114691 Lupinus albus HOM05D004875 ORTHO05D005598 0.0e+00 1170.6 1006 60.2
TWI79G1304 Tripterygium wilfordii HOM05D004875 ORTHO05D005598 0.0e+00 1167.5 1008 60.1
Migut.N00759 Erythranthe guttata HOM05D004875 ORTHO05D005598 0.0e+00 1167.1 1012 60.5
Glyma.11G163900 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1163.7 1011 59.8
ClCG02G019240 Citrullus lanatus HOM05D004875 ORTHO05D005598 0.0e+00 1159.1 1012 59.4
AT5G58450 Arabidopsis thaliana HOM05D004875 ORTHO05D005598 0.0e+00 1154.4 1007 59.3
CsaV3_6G015880 Cucumis sativus L. HOM05D004875 ORTHO05D005598 0.0e+00 1153.7 1007 59.2
CARHR272270 Cardamine hirsuta HOM05D004875 ORTHO05D005598 0.0e+00 1151.3 1008 59.6
MBI15_g31180_MAGBIO Magnolia biondii HOM05D004875 ORTHO05D005598 0.0e+00 1150.2 1010 58.4
AL8G34640 Arabidopsis lyrata HOM05D004875 ORTHO05D005598 0.0e+00 1149.0 1008 59.5
PGR102G0105 Punica granatum HOM05D004875 ORTHO05D005598 0.0e+00 1143.6 1007 59.5
Glyma.18G057100 Glycine max HOM05D004875 ORTHO05D005598 0.0e+00 1143.3 1011 59.1
VMungo0540G0701 Vigna mungo HOM05D004875 ORTHO05D005598 0.0e+00 1140.9 1006 58.9
Sp6g20140 Schrenkiella parvula HOM05D004875 ORTHO05D005598 0.0e+00 1140.6 1007 59.0
TPR.G25698 Trifolium pratense HOM05D004875 ORTHO05D005598 0.0e+00 1140.6 1007 58.6
Carub.0008s1904 Capsella rubella HOM05D004875 ORTHO05D005598 0.0e+00 1136.3 1005 59.0
arahy.Tifrunner.gnm1.ann1.LY55DJ Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1135.9 1007 57.9
arahy.Tifrunner.gnm1.ann1.7Z8DLY Arachis hypogaea HOM05D004875 ORTHO05D005598 0.0e+00 1135.6 1007 57.9
BcaB08g36179 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1134.8 1007 58.3
A10p15830 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1131.7 1010 58.3
AUR62001870 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1131.7 1008 58.8
Lj6g0003221 Lotus japonicus HOM05D004875 ORTHO05D005598 0.0e+00 1131.7 1006 58.3
Eucgr.B04004 Eucalyptus grandis HOM05D004875 ORTHO05D005598 0.0e+00 1131.3 1011 59.3
Medtr3g465700 Medicago truncatula HOM05D004875 ORTHO05D005598 0.0e+00 1129.4 1007 58.3
THA.LOC104799387 Tarenaya hassleriana HOM05D004875 ORTHO05D005598 0.0e+00 1128.2 1011 58.5
Phvul.006G074100 Phaseolus vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1127.5 1007 58.2
BcaC04g19867 Brassica carinata HOM05D004875 ORTHO05D005598 0.0e+00 1126.3 1010 58.2
C09p50320 Brassica napus HOM05D004875 ORTHO05D005598 0.0e+00 1126.3 1010 57.9
BolC9t57888H Brassica oleracea HOM05D004875 ORTHO05D005598 0.0e+00 1126.3 1010 58.2
AUR62009668 Chenopodium quinoa HOM05D004875 ORTHO05D005598 0.0e+00 1124.0 1008 58.3
Psat5g154480 Pisum sativum HOM05D004875 ORTHO05D005598 0.0e+00 1122.1 1005 57.4
BraA10t43642Z Brassica rapa HOM05D004875 ORTHO05D005598 0.0e+00 1121.7 1010 57.9
Aa31LG11G230 Aethionema arabicum HOM05D004875 ORTHO05D005598 0.0e+00 1110.1 1016 57.6
EL10Ac7g15921 Beta vulgaris HOM05D004875 ORTHO05D005598 0.0e+00 1108.6 1006 57.8
Hund05024 Selenicereus undatus HOM05D004875 ORTHO05D005598 6.9e-312 1074.3 1006 57.1
ATR0594G111 Amborella trichopoda HOM05D004875 ORTHO05D005598 3.5e-306 1055.0 1012 55.5
Ah.08g215110 Amaranthus hybridus HOM05D004875 ORTHO05D005598 3.8e-305 1051.6 978 57.1
Os05g0345400 Oryza sativa ssp. japonica HOM05D004875 ORTHO05D005598 7.5e-301 1037.3 1010 53.7
Gohir.D05G109200 Gossypium hirsutum HOM05D004875 ORTHO05D005598 1.8e-294 1016.1 776 66.2
Nn2g11010 Nelumbo nucifera HOM05D004875 ORTHO05D005598 1.3e-292 1010.0 791 65.6
HPP92_003240 Vanilla planifolia HOM05D004875 ORTHO05D005598 1.6e-290 1003.0 1012 52.6
Gohir.A05G109100 Gossypium hirsutum HOM05D004875 ORTHO05D005598 3.3e-280 968.8 776 64.3
Thhalv10012545m.g Eutrema salsugineum HOM05D004875 ORTHO05D005598 2.2e-260 902.9 687 65.5
CDE04G2228 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 1.1e-259 900.6 978 51.2
Dinv09669 Davidia involucrata HOM05D004875 ORTHO05D005598 2.5e-256 889.4 588 75.7
Actinidia32610 Actinidia chinensis HOM05D004875 ORTHO05D005598 4.2e-251 872.1 604 70.9
SEGI_14366 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 3.4e-237 825.9 988 47.1
PSO349G0337 Papaver somniferum HOM05D004875 ORTHO05D005598 5.1e-233 812.0 1028 44.2
PSO765G0012 Papaver somniferum HOM05D004875 ORTHO05D005598 2.0e-229 800.0 1032 43.8
Zm00001eb286340 Zea mays HOM05D004875 ORTHO05D005598 5.0e-228 795.4 865 48.7
Sc12g0001970 Simmondsia chinensis HOM05D004875 ORTHO05D005598 3.6e-218 762.7 776 51.4
Ca_15009_v3 Cicer arietinum L. HOM05D004875 ORTHO05D005598 1.1e-214 751.1 752 52.4
CDE07G1129 Ceratophyllum demersum HOM05D004875 ORTHO05D005598 8.0e-210 734.9 1016 44.3
Peaxi162Scf00055g01011 Petunia axillaris HOM05D004875 ORTHO05D005598 4.1e-198 696.0 497 69.8
Solyc09g057910.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 3.5e-197 693.0 498 68.7
Mapoly0170s0019 Marchantia polymorpha HOM05D004875 ORTHO05D005598 1.4e-182 644.4 1024 39.4
AagrBONN_evm.TU.Sc2ySwM_228.3164 Anthoceros agrestis HOM05D004875 ORTHO05D005598 1.2e-176 624.8 1047 38.4
Atru.chr3.4118 Acer truncatum HOM05D004875 ORTHO05D005598 6.2e-170 602.4 447 68.9
Nitab4.5_0000002g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 7.5e-168 595.5 522 60.7
Cpa.g.sc2.356 Carica papaya HOM05D004875 ORTHO05D005598 4.1e-166 589.7 535 57.9
Nitab4.5_0005130g0040 Nicotiana tabacum HOM05D004875 ORTHO05D005598 2.3e-164 583.9 566 57.1
Cpa.g.sc2.355 Carica papaya HOM05D004875 ORTHO05D005598 1.5e-163 581.3 419 69.9
Peaxi162Scf00055g00107 Petunia axillaris HOM05D004875 ORTHO05D005598 3.4e-160 570.1 512 57.2
Pp3c18_5510 Physcomitrium patens HOM05D004875 ORTHO05D005598 4.2e-158 563.1 1021 35.5
Solyc09g057920.3 Solanum lycopersicum HOM05D004875 ORTHO05D005598 1.2e-152 545.0 512 55.7
Atru.chr3.4119 Acer truncatum HOM05D004875 ORTHO05D005598 4.6e-141 506.5 421 61.8
Oeu027574.2 Olea europaea HOM05D004875 ORTHO05D005598 1.4e-137 495.0 463 54.9
SHI19214 Sapria himalayana HOM05D004875 ORTHO05D005598 9.7e-123 445.7 628 41.2
CBR_g50477 Chara braunii HOM05D004875 ORTHO05D005598 2.9e-119 434.1 1104 30.2
unitig_0.g437 Utricularia gibba HOM05D004875 ORTHO05D005598 1.9e-118 431.4 535 44.7
Oeu019275.2 Olea europaea HOM05D004875 ORTHO05D005598 5.7e-107 393.3 269 76.2
MELO3C025695.2 Cucumis melo HOM05D004875 ORTHO05D005598 2.6e-104 384.4 231 79.7
Sc12g0001960 Simmondsia chinensis HOM05D004875 ORTHO05D005598 1.3e-98 365.5 231 79.7
MELO3C025696.2 Cucumis melo HOM05D004875 ORTHO05D005598 1.4e-97 362.1 423 46.6
MELO3C027117.2 Cucumis melo HOM05D004875 ORTHO05D005598 5.9e-88 330.1 295 57.3
Nitab4.5_0005130g0030 Nicotiana tabacum HOM05D004875 ORTHO05D005598 7.2e-78 296.6 318 50.3
Nitab4.5_0000002g0020 Nicotiana tabacum HOM05D004875 ORTHO05D005598 3.0e-76 291.2 318 49.4
CAN.G3.43 Capsicum annuum HOM05D004875 ORTHO05D005598 2.0e-75 288.5 333 48.0
unitig_0.g436 Utricularia gibba HOM05D004875 ORTHO05D005598 6.6e-71 273.5 450 38.4
PSO541G6542 Papaver somniferum HOM05D004875 ORTHO05D005598 2.9e-58 231.5 391 40.9
PSO541G1704 Papaver somniferum HOM05D004875 ORTHO05D005598 1.2e-53 216.1 355 39.4
PSO532G0016 Papaver somniferum HOM05D004875 ORTHO05D005598 6.8e-52 210.3 274 45.3
CAN.G3.44 Capsicum annuum HOM05D004875 ORTHO05D005598 9.2e-49 199.9 109 89.0
C04p28250 Brassica napus HOM05D004875 ORTHO05D005598 9.6e-46 189.9 163 61.3
BolC4t24370H Brassica oleracea HOM05D004875 ORTHO05D005598 9.6e-46 189.9 163 61.3
PRCOL_00002473 Prasinoderma coloniale HOM05D004875 ORTHO05D005598 5.2e-44 184.1 706 26.1
Lsat_1_v5_gn_9_14740 Lactuca sativa HOM05D000378 ORTHO05D005598 8.4e-42 176.8 152 60.5
PSO339G3761 Papaver somniferum HOM05D004875 ORTHO05D005598 1.4e-41 176.0 396 33.6
PSO478G4214 Papaver somniferum HOM05D004875 ORTHO05D005598 2.4e-41 175.3 245 42.9
PSO170G5144 Papaver somniferum HOM05D004875 ORTHO05D005598 7.1e-41 173.7 392 32.9
Cre11.g475050 Chlamydomonas reinhardtii HOM05D004875 ORTHO05D005598 7.8e-40 170.2 737 25.9
PSO384G1619 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-37 162.9 311 36.7
MCO11G770 Micromonas commoda HOM05D004875 ORTHO05D005598 4.2e-33 147.9 757 22.3
PSO541G5558 Papaver somniferum HOM05D004875 ORTHO05D005598 8.7e-31 140.2 434 28.3
SHI19217 Sapria himalayana HOM05D004875 ORTHO05D005598 5.6e-30 137.5 170 47.1
BcaC02g10491 Brassica carinata HOM05D004875 ORTHO05D005598 2.1e-29 135.6 116 62.9
BcaC07g37054 Brassica carinata HOM05D004875 ORTHO05D005598 1.7e-26 125.9 121 60.3
C01p15940 Brassica napus HOM05D004875 ORTHO05D005598 3.2e-25 121.7 76 81.6
SHI19216 Sapria himalayana HOM05D004875 ORTHO05D005598 6.7e-23 114.0 76 71.1
PSO170G5101 Papaver somniferum HOM05D004875 ORTHO05D005598 1.5e-19 102.8 445 24.5
SMO117G0137 Selaginella moellendorffii HOM05D004875 ORTHO05D005598 6.5e-18 97.4 89 55.1
BolC8t47222H Brassica oleracea HOM05D004875 ORTHO05D005598 5.5e-17 94.4 61 77.0
BcaB03g16392 Brassica carinata HOM05D004875 ORTHO05D005598 7.1e-17 94.0 189 32.8
SHI19215 Sapria himalayana HOM05D004875 ORTHO05D005598 2.7e-16 92.0 175 32.0
PSO170G3032 Papaver somniferum HOM05D004875 ORTHO05D005598 1.3e-13 83.2 143 35.7
PGSC0003DMG400004010 Solanum tuberosum HOM05D004875 ORTHO05D005598 5.9e-11 74.3 69 59.4
SHI19218 Sapria himalayana HOM05D004875 ORTHO05D005598 1.1e-09 70.1 43 72.1
BcaB06g26910 Brassica carinata HOM05D000375 ORTHO05D000240 1.9e-09 69.3 91 41.8
SEGI_36322 Sequoiadendron giganteum HOM05D004875 ORTHO05D005598 5.5e-09 67.8 43 72.1
Oeu042861.1 Olea europaea HOM05D004875 ORTHO05D005598 7.9e-08 63.9 39 71.8
Sabra19G0131700 Salix brachista HOM05D000080 ORTHO05D004954 7.9e-08 63.9 107 42.1


User provided reference genes

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