Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 1.1e-105 386.7 210 100.0
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 9.6e-65 250.8 210 65.7
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 1.2e-51 207.2 212 57.5
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 6.6e-50 201.4 210 54.8
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 2.5e-49 199.5 211 54.5
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 3.3e-49 199.1 210 52.4
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 7.3e-49 198.0 211 55.5
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 9.6e-49 197.6 213 54.0
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 4.8e-48 195.3 212 53.8
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 2.6e-46 189.5 212 55.7
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 2.6e-46 189.5 212 52.4
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 3.4e-46 189.1 215 53.5
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 4.5e-46 188.7 212 52.4
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 5.8e-46 188.3 212 51.9
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.7e-45 186.8 212 51.9
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 2.9e-45 186.0 213 53.5
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 4.9e-45 185.3 211 52.6
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 4.9e-45 185.3 211 52.6
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 4.9e-45 185.3 209 51.7
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 8.4e-45 184.5 210 53.8
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 1.1e-44 184.1 211 52.1
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.1e-44 184.1 212 51.9
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.1e-44 184.1 212 51.9
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 1.9e-44 183.3 205 50.7
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 1.9e-44 183.3 217 52.5
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 4.2e-44 182.2 209 50.7
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 4.2e-44 182.2 206 52.4
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 7.1e-44 181.4 176 57.4
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 9.3e-44 181.0 219 52.1
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 2.1e-43 179.9 213 49.8
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 2.7e-43 179.5 212 49.5
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 3.5e-43 179.1 195 54.9
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 4.6e-43 178.7 213 50.7
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 7.9e-43 177.9 210 50.5
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 7.9e-43 177.9 208 49.5
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 1.0e-42 177.6 198 51.0
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 1.3e-42 177.2 209 49.3
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 1.3e-42 177.2 211 49.3
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 1.3e-42 177.2 219 50.7
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 2.3e-42 176.4 210 51.9
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 3.0e-42 176.0 212 51.4
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 3.0e-42 176.0 213 49.3
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 1.1e-41 174.1 207 50.7
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 1.5e-41 173.7 213 47.9
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 2.5e-41 172.9 216 48.6
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 3.3e-41 172.6 211 49.8
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 4.3e-41 172.2 212 49.1
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 7.4e-41 171.4 211 48.3
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 9.6e-41 171.0 212 49.5
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 1.6e-40 170.2 217 47.5
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 2.1e-40 169.9 217 47.9
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 2.8e-40 169.5 210 50.0
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 3.7e-40 169.1 164 59.1
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 4.8e-40 168.7 212 48.1
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 4.8e-40 168.7 203 48.3
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 8.1e-40 167.9 220 45.5
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 1.4e-39 167.2 211 49.3
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 2.4e-39 166.4 212 47.6
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 6.9e-39 164.9 209 45.5
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 9.0e-39 164.5 211 48.3
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 9.0e-39 164.5 212 47.6
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 1.2e-38 164.1 203 52.7
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.5e-38 163.7 202 51.0
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 2.0e-38 163.3 208 48.1
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 2.9e-37 159.5 208 47.6
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 3.8e-37 159.1 208 48.6
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 8.4e-37 157.9 213 49.3
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 1.4e-36 157.1 197 49.2
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.2e-35 154.1 209 45.5
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.2e-35 154.1 209 45.5
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 1.2e-35 154.1 221 43.4
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.2e-35 154.1 211 45.0
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.6e-35 153.7 209 44.0
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.3e-34 150.6 214 46.3
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 8.7e-34 147.9 212 42.9
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 3.3e-33 146.0 209 43.1
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 3.3e-33 146.0 209 41.1
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 3.3e-33 146.0 210 42.9
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 4.3e-33 145.6 209 41.6
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 4.3e-33 145.6 213 42.3
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 4.3e-33 145.6 204 40.2
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 9.6e-33 144.4 209 40.7
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 9.6e-33 144.4 213 42.3
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 2.1e-32 143.3 211 42.7
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 3.7e-32 142.5 212 42.9
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 4.8e-32 142.1 210 42.9
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 1.1e-31 141.0 211 42.7
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 1.1e-31 141.0 211 41.2
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.4e-31 140.6 217 43.3
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 1.4e-31 140.6 205 41.5
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 2.4e-31 139.8 213 41.3
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 3.1e-31 139.4 211 41.7
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 3.1e-31 139.4 205 43.4
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 4.1e-31 139.0 216 40.3
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 4.1e-31 139.0 211 40.8
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 5.3e-31 138.7 210 41.9
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 5.3e-31 138.7 210 40.5
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 9.0e-31 137.9 211 42.2
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 1.5e-30 137.1 206 39.8
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 2.6e-30 136.3 211 40.3
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 3.4e-30 136.0 210 41.4
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 3.8e-29 132.5 212 40.1
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 3.8e-29 132.5 211 40.8
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 8.4e-29 131.3 213 39.0
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 1.4e-28 130.6 216 40.7
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 1.9e-28 130.2 210 40.5
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.5e-28 129.8 141 51.8
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 5.5e-28 128.6 198 40.9
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 2.7e-27 126.3 213 41.3
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 4.6e-27 125.6 204 38.7
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 6.1e-27 125.2 209 41.6
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 7.9e-27 124.8 211 38.9
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.0e-26 124.4 213 39.0
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.3e-26 124.0 210 40.0
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 3.9e-26 122.5 132 52.3
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 5.1e-26 122.1 225 38.2
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 8.7e-26 121.3 212 38.2
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 1.9e-25 120.2 199 41.2
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 5.7e-25 118.6 212 36.3
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 1.3e-24 117.5 210 37.6
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 1.6e-24 117.1 200 40.0
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 2.8e-24 116.3 207 35.7
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 2.8e-24 116.3 204 37.7
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 6.3e-24 115.2 206 39.3
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 8.2e-24 114.8 188 37.8
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 1.1e-23 114.4 215 35.3
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.4e-23 114.0 209 35.9
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 1.4e-23 114.0 141 48.2
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 1.2e-22 110.9 203 40.4
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 1.2e-22 110.9 207 38.2
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 1.2e-22 110.9 204 37.3
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 2.0e-22 110.2 115 53.9
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 5.9e-22 108.6 211 38.9
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 7.7e-22 108.2 211 38.9
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 7.7e-22 108.2 197 40.6
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 7.7e-22 108.2 197 40.6
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 1.0e-21 107.8 197 40.6
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 2.2e-21 106.7 197 40.1
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 2.2e-21 106.7 154 44.2
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 2.2e-21 106.7 196 39.8
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 5.0e-21 105.5 188 42.0
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 2.5e-20 103.2 138 47.8
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 4.2e-20 102.4 199 37.7
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 9.4e-20 101.3 169 37.9
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 2.7e-19 99.8 217 36.4
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 4.6e-19 99.0 212 34.9
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 2.3e-18 96.7 214 37.9
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 2.3e-18 96.7 217 36.4
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 2.0e-17 93.6 200 35.0
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 3.3e-17 92.8 139 43.2
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 1.8e-10 70.5 115 37.4
CSS0037477 Camellia sinensis var. sinensis HOM05D000739 ORTHO05D109703 7.0e-07 58.5 80 43.8


User provided reference genes

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