Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.1e-33 146.4 87 100.0
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 1.8e-25 119.0 85 70.6
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 6.8e-25 117.1 85 69.4
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 6.8e-25 117.1 85 69.4
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 6.8e-25 117.1 85 69.4
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 8.9e-25 116.7 85 69.4
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 7.5e-24 113.6 85 74.1
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 7.5e-24 113.6 85 74.1
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 9.9e-24 113.2 85 72.9
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 9.9e-24 113.2 85 74.1
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 1.3e-23 112.8 87 65.5
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 1.7e-23 112.5 78 69.2
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 1.7e-23 112.5 83 65.1
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.2e-23 112.1 87 66.7
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 2.9e-23 111.7 85 72.9
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 2.9e-23 111.7 82 73.2
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 3.7e-23 111.3 78 67.9
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 3.7e-23 111.3 82 75.6
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 6.4e-23 110.5 83 65.1
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 6.4e-23 110.5 85 72.9
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 8.3e-23 110.2 87 64.4
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 8.3e-23 110.2 83 65.1
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 1.1e-22 109.8 85 72.9
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 2.4e-22 108.6 82 63.4
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 3.2e-22 108.2 85 69.4
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 3.2e-22 108.2 82 63.4
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 3.2e-22 108.2 83 66.3
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 4.1e-22 107.8 84 63.1
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 5.4e-22 107.5 88 69.3
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 7.1e-22 107.1 87 70.1
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 7.1e-22 107.1 81 64.2
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 7.1e-22 107.1 82 73.2
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 1.2e-21 106.3 83 71.1
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 1.6e-21 105.9 83 62.7
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.6e-21 105.9 87 63.2
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 1.6e-21 105.9 87 58.6
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 2.1e-21 105.5 85 68.2
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 3.5e-21 104.8 85 58.8
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 4.6e-21 104.4 87 59.8
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 4.6e-21 104.4 78 65.4
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 4.6e-21 104.4 78 65.4
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 4.6e-21 104.4 87 62.1
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 6.0e-21 104.0 87 63.2
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 6.0e-21 104.0 81 72.8
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.0e-20 103.2 85 60.0
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 1.0e-20 103.2 82 70.7
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 1.3e-20 102.8 89 59.6
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.3e-20 102.8 76 65.8
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.3e-20 102.8 76 65.8
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 1.3e-20 102.8 82 67.1
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 1.3e-20 102.8 89 59.6
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 1.3e-20 102.8 89 59.6
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.7e-20 102.4 75 65.3
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 2.3e-20 102.1 90 70.0
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 3.0e-20 101.7 82 59.8
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 5.1e-20 100.9 81 60.5
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 6.6e-20 100.5 78 60.3
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 8.6e-20 100.1 83 57.8
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 8.6e-20 100.1 73 64.4
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 1.1e-19 99.8 94 57.4
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 1.5e-19 99.4 76 60.5
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 2.5e-19 98.6 94 56.4
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 2.5e-19 98.6 85 57.6
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.3e-19 98.2 83 57.8
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 3.3e-19 98.2 83 57.8
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 5.6e-19 97.4 87 52.9
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 5.6e-19 97.4 76 71.1
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 5.6e-19 97.4 82 56.1
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 7.3e-19 97.1 73 61.6
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 9.5e-19 96.7 68 67.6
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.2e-18 96.3 73 61.6
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 1.6e-18 95.9 85 55.3
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 1.6e-18 95.9 85 55.3
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 1.6e-18 95.9 83 55.4
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 2.1e-18 95.5 75 57.3
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 2.1e-18 95.5 78 57.7
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 2.8e-18 95.1 87 51.7
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 2.8e-18 95.1 73 60.3
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 2.8e-18 95.1 73 60.3
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 3.6e-18 94.7 88 56.8
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.6e-18 94.7 73 63.0
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 3.6e-18 94.7 68 64.7
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 3.6e-18 94.7 79 62.0
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 4.7e-18 94.4 85 54.1
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 4.7e-18 94.4 83 57.8
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 4.7e-18 94.4 82 54.9
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 4.7e-18 94.4 100 65.0
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 4.7e-18 94.4 88 55.7
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 4.7e-18 94.4 80 56.2
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 6.2e-18 94.0 78 57.7
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 6.2e-18 94.0 88 63.6
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 8.1e-18 93.6 74 59.5
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 8.1e-18 93.6 83 69.9
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 8.1e-18 93.6 76 57.9
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 8.1e-18 93.6 82 56.1
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.1e-17 93.2 88 55.7
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 1.1e-17 93.2 88 55.7
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 1.1e-17 93.2 88 55.7
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 1.4e-17 92.8 94 52.1
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 1.4e-17 92.8 63 69.8
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 1.8e-17 92.4 76 56.6
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 1.8e-17 92.4 88 62.5
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 3.1e-17 91.7 86 61.6
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 4.0e-17 91.3 88 54.5
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 5.2e-17 90.9 97 50.5
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 6.8e-17 90.5 73 56.2
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 6.8e-17 90.5 82 53.7
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.2e-16 89.7 82 53.7
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 1.2e-16 89.7 82 53.7
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 1.2e-16 89.7 76 57.9
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 1.5e-16 89.4 74 58.1
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 2.0e-16 89.0 84 54.8
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 4.4e-16 87.8 78 51.3
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 5.8e-16 87.4 79 51.9
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.3e-15 86.3 76 61.8
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 3.8e-15 84.7 65 60.0
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 4.9e-15 84.3 67 64.2
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 4.9e-15 84.3 85 47.1
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 8.4e-15 83.6 114 43.0
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 1.9e-14 82.4 90 48.9
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 5.4e-14 80.9 85 45.9
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 1.2e-13 79.7 69 58.0
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 1.2e-13 79.7 69 58.0
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 2.7e-13 78.6 82 51.2
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 3.5e-13 78.2 71 53.5
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 6.0e-13 77.4 73 56.2
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 7.8e-13 77.0 69 68.1
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 1.0e-12 76.6 53 66.0
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 1.3e-12 76.3 52 67.3
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 1.7e-12 75.9 87 47.1
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 1.7e-12 75.9 72 51.4
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.7e-12 75.9 60 60.0
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 2.3e-12 75.5 67 53.7
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 3.0e-12 75.1 67 55.2
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.9e-11 72.4 65 53.8
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 1.9e-11 72.4 72 41.7
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 4.3e-11 71.2 83 49.4
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 4.3e-11 71.2 54 57.4
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 2.8e-10 68.6 71 43.7
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 3.6e-10 68.2 52 59.6
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 1.4e-09 66.2 87 48.3
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 2.4e-09 65.5 45 66.7
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 5.3e-09 64.3 54 57.4
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 6.9e-09 63.9 54 55.6
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 3.4e-08 61.6 37 75.7
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 4.4e-08 61.2 76 47.4
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 9.9e-08 60.1 93 38.7
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 1.7e-07 59.3 54 48.1
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 2.9e-07 58.5 62 43.5
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 3.8e-07 58.2 43 58.1
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 1.9e-06 55.8 98 35.7
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 2.4e-06 55.5 72 44.4


User provided reference genes

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