Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 7.7e-109 397.1 195 100.0
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 5.3e-86 321.2 202 79.2
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 3.2e-83 312.0 199 75.4
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 9.8e-72 273.9 199 67.8
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 2.2e-71 272.7 191 69.6
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 3.7e-71 271.9 190 69.5
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 8.3e-71 270.8 190 71.6
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 1.4e-70 270.0 198 67.2
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 2.4e-70 269.2 181 71.8
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 1.2e-69 266.9 188 69.1
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 6.6e-68 261.2 191 69.1
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 1.1e-67 260.4 191 68.1
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 2.5e-67 259.2 191 68.1
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 3.3e-67 258.8 201 63.7
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 2.1e-66 256.1 177 70.6
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 2.1e-66 256.1 178 68.0
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 6.1e-66 254.6 191 64.9
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 1.4e-65 253.4 189 67.2
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 2.0e-64 249.6 191 65.4
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 5.7e-64 248.1 193 65.8
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 2.2e-63 246.1 192 65.1
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 3.7e-63 245.4 193 64.2
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 4.9e-63 245.0 178 66.3
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 4.1e-62 241.9 192 64.6
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 7.8e-61 237.7 181 63.5
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 7.8e-61 237.7 175 65.1
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 1.3e-60 236.9 179 68.2
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 1.7e-60 236.5 181 63.0
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 1.7e-60 236.5 185 63.2
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 1.7e-60 236.5 194 62.9
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 2.3e-60 236.1 182 63.7
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 2.3e-60 236.1 154 68.2
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 3.9e-60 235.3 193 61.7
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 6.6e-60 234.6 194 61.3
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 8.6e-60 234.2 179 63.1
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 1.1e-59 233.8 194 58.8
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 1.5e-59 233.4 194 60.8
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 1.9e-59 233.0 178 64.6
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 2.5e-59 232.6 194 59.8
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 3.3e-59 232.3 178 62.4
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 4.3e-59 231.9 194 60.8
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 4.3e-59 231.9 186 60.8
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 5.6e-59 231.5 193 63.7
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 7.3e-59 231.1 179 62.0
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 2.1e-58 229.6 180 61.7
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 3.6e-58 228.8 184 63.0
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 3.6e-58 228.8 194 57.7
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 4.7e-58 228.4 157 70.7
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 1.4e-57 226.9 175 63.4
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 5.2e-57 224.9 194 62.9
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 5.2e-57 224.9 169 65.7
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 5.2e-57 224.9 195 57.4
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 5.2e-57 224.9 197 59.9
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 6.8e-57 224.6 167 60.5
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 6.8e-57 224.6 169 60.9
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 2.6e-56 222.6 175 64.0
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 4.4e-56 221.9 175 61.7
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 1.3e-55 220.3 187 59.9
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 1.3e-55 220.3 176 61.9
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 1.7e-55 219.9 178 61.8
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 1.7e-55 219.9 194 58.2
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 2.2e-55 219.5 161 60.9
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 3.7e-55 218.8 195 55.4
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 4.9e-55 218.4 169 65.1
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 6.4e-55 218.0 297 43.8
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 3.2e-54 215.7 167 66.5
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 7.0e-54 214.5 186 60.2
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 9.2e-54 214.2 165 61.8
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 3.0e-52 209.1 186 58.6
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 3.0e-52 209.1 180 58.9
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 2.5e-51 206.1 181 58.6
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 5.6e-51 204.9 177 58.2
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 5.6e-51 204.9 198 53.0
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 3.1e-49 199.1 164 61.0
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 3.1e-49 199.1 165 61.8
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 4.0e-49 198.7 165 58.2
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 8.9e-49 197.6 166 59.6
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 8.9e-49 197.6 166 59.6
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 8.9e-49 197.6 166 59.6
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 8.9e-49 197.6 203 54.2
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 1.5e-48 196.8 198 50.5
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 2.0e-48 196.4 164 60.4
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 2.0e-48 196.4 168 58.9
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 2.0e-48 196.4 190 53.7
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 3.4e-48 195.7 169 59.2
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 5.8e-48 194.9 163 58.9
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 5.8e-48 194.9 154 59.7
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 9.9e-48 194.1 175 57.7
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 1.3e-47 193.7 205 52.7
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 1.7e-47 193.4 179 53.1
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 3.7e-47 192.2 158 56.3
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 4.9e-47 191.8 152 61.2
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 1.1e-46 190.7 168 57.1
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.0e-44 184.1 142 59.2
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 1.2e-42 177.2 163 53.4
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 6.2e-42 174.9 126 67.5
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 3.4e-40 169.1 149 52.3
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 3.8e-39 165.6 126 65.1
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 3.0e-36 156.0 107 71.0
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 1.1e-35 154.1 133 51.9
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 3.3e-35 152.5 165 44.2
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 3.6e-34 149.1 92 73.9
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 4.7e-34 148.7 122 52.5
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 9.0e-33 144.4 91 72.5
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 3.8e-31 139.0 113 55.8
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 7.8e-29 131.3 110 55.5
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 4.9e-23 112.1 131 44.3
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 8.4e-23 111.3 108 47.2
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 2.8e-18 96.3 148 38.5
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 4.8e-18 95.5 72 59.7
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 2.0e-16 90.1 118 44.9
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 3.8e-15 85.9 155 36.1
EL10As2g23173 Beta vulgaris HOM05D007042 ORTHO05D008441 2.5e-11 73.2 54 53.7
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 1.8e-09 67.0 65 58.5
Ah.02g120930 Amaranthus hybridus HOM05D055707 ORTHO05D008441 7.1e-06 55.1 41 53.7
MCO16G209 Micromonas commoda HOM05D007042 ORTHO05D008441 7.1e-06 55.1 150 26.0


User provided reference genes

Program Settings