Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G0627 Erigeron canadensis HOM05D004356 ORTHO05D005542 6.4e-235 817.0 403 100.0
Lsat_1_v5_gn_1_2520 Lactuca sativa HOM05D004356 ORTHO05D005542 1.0e-192 676.8 402 85.1
HanXRQChr02g0040341 Helianthus annuus HOM05D004356 ORTHO05D005542 9.1e-189 663.7 401 83.5
GSVIVG01009120001 Vitis vinifera HOM05D004356 ORTHO05D005542 1.6e-177 626.3 402 75.1
Dinv42649 Davidia involucrata HOM05D004356 ORTHO05D005542 6.1e-177 624.4 407 75.9
TAR381G1323 Trochodendron aralioides HOM05D004356 ORTHO05D005542 1.0e-176 623.6 402 75.1
CSS0046210 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.8e-176 622.9 404 75.2
Nitab4.5_0004523g0040 Nicotiana tabacum HOM05D004356 ORTHO05D005542 4.8e-174 614.8 402 73.1
Actinidia33114 Actinidia chinensis HOM05D004356 ORTHO05D005542 1.4e-173 613.2 395 76.2
MELO3C011060.2 Cucumis melo HOM05D004356 ORTHO05D005542 1.7e-171 606.3 404 72.0
CsaV3_2G030020 Cucumis sativus L. HOM05D004356 ORTHO05D005542 2.2e-171 605.9 404 72.0
QL09p016893 Quercus lobata HOM05D004356 ORTHO05D005542 2.9e-171 605.5 405 72.8
COL.COLO4_11966 Corchorus olitorius HOM05D004356 ORTHO05D005542 8.5e-171 604.0 400 72.5
Nitab4.5_0001788g0020 Nicotiana tabacum HOM05D004356 ORTHO05D005542 4.2e-170 601.7 402 72.1
Cc10_g15470 Coffea canephora HOM05D004356 ORTHO05D005542 7.2e-170 600.9 400 73.8
MD15G1379800 Malus domestica HOM05D004356 ORTHO05D005542 7.2e-170 600.9 406 71.2
MD00G1136500 Malus domestica HOM05D004356 ORTHO05D005542 9.4e-170 600.5 406 71.4
Cc10_g15440 Coffea canephora HOM05D004356 ORTHO05D005542 1.6e-169 599.7 402 73.6
vmacro04684 Vaccinium macrocarpon HOM05D004356 ORTHO05D005542 2.1e-169 599.4 420 71.9
Solyc01g081300.4 Solanum lycopersicum HOM05D004356 ORTHO05D005542 3.6e-169 598.6 396 72.0
Oeu025262.1 Olea europaea HOM05D004356 ORTHO05D005542 4.7e-169 598.2 353 79.6
CANSAT21G1617 Cannabis sativa HOM05D004356 ORTHO05D005542 6.1e-169 597.8 407 71.7
Atru.chr13.1064 Acer truncatum HOM05D004356 ORTHO05D005542 1.0e-168 597.0 406 70.2
Atru.chr13.1070 Acer truncatum HOM05D004356 ORTHO05D005542 1.0e-168 597.0 406 70.2
Duzib093G1902 Durio zibethinus HOM05D004356 ORTHO05D005542 1.8e-168 596.3 396 71.7
PGSC0003DMG400001802 Solanum tuberosum HOM05D004356 ORTHO05D005542 5.2e-168 594.7 400 72.5
CAN.G992.8 Capsicum annuum HOM05D004356 ORTHO05D005542 6.8e-168 594.3 402 71.4
FAN18G3440 Fragaria x ananassa HOM05D004356 ORTHO05D005542 8.8e-168 594.0 395 72.4
CSS0005507 Camellia sinensis var. sinensis HOM05D004356 ORTHO05D005542 1.2e-167 593.6 405 73.3
FvH4_5g36000 Fragaria vesca HOM05D004356 ORTHO05D005542 1.2e-167 593.6 395 72.4
RcHm_v2.0_Chr1g0327751 Rosa chinensis HOM05D004356 ORTHO05D005542 2.0e-167 592.8 396 72.2
PSO675G5075 Papaver somniferum HOM05D004356 ORTHO05D005542 4.4e-167 591.7 412 71.4
Cc07_g18320 Coffea canephora HOM05D004356 ORTHO05D005542 7.5e-167 590.9 340 79.7
FAN04G0906 Fragaria x ananassa HOM05D004356 ORTHO05D005542 7.5e-167 590.9 395 72.2
Haze_22357 Corylus avellana HOM05D004356 ORTHO05D005542 9.8e-167 590.5 443 67.5
Sopen01g032880 Solanum pennellii HOM05D004356 ORTHO05D005542 9.8e-167 590.5 352 77.6
Rhsim07G0209000 Rhododendron simsii HOM05D004356 ORTHO05D005542 1.7e-166 589.7 422 69.7
Manes.18G062300 Manihot esculenta HOM05D004356 ORTHO05D005542 8.3e-166 587.4 376 74.7
RcHm_v2.0_Chr7g0237731 Rosa chinensis HOM05D004356 ORTHO05D005542 1.8e-165 586.3 397 71.5
Aqoxy3G00172 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 2.4e-165 585.9 400 71.2
Migut.M02007 Erythranthe guttata HOM05D004356 ORTHO05D005542 4.1e-165 585.1 399 71.9
Ciclev10001304m.g Citrus clementina HOM05D004356 ORTHO05D005542 5.4e-165 584.7 408 70.1
PSO675G0521 Papaver somniferum HOM05D004356 ORTHO05D005542 1.2e-164 583.6 402 71.4
TWI56G1415 Tripterygium wilfordii HOM05D004356 ORTHO05D005542 1.2e-164 583.6 406 70.4
SalBow8G3481 Salvia bowleyana HOM05D004356 ORTHO05D005542 1.6e-164 583.2 337 80.7
Sed0016629 Sechium edule HOM05D004356 ORTHO05D005542 2.0e-164 582.8 342 78.4
Gohir.D05G224800 Gossypium hirsutum HOM05D004356 ORTHO05D005542 7.7e-164 580.9 398 70.9
Ca_19032_v3 Cicer arietinum L. HOM05D004356 ORTHO05D005542 1.0e-163 580.5 403 70.7
Gohir.A05G222100 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.0e-163 580.5 402 70.1
FAN08G0112 Fragaria x ananassa HOM05D004356 ORTHO05D005542 2.2e-163 579.3 422 67.8
SGA_v2.0_scaffold175G39331 Striga asiatica HOM05D004356 ORTHO05D005542 2.2e-163 579.3 408 70.1
Gorai.009G232200 Gossypium raimondii HOM05D004356 ORTHO05D005542 2.9e-163 578.9 397 70.8
PSO017G1942 Papaver somniferum HOM05D004356 ORTHO05D005542 3.8e-163 578.6 402 70.1
THA.LOC104816870 Tarenaya hassleriana HOM05D004356 ORTHO05D005542 5.0e-163 578.2 401 71.1
Dinv44826 Davidia involucrata HOM05D004356 ORTHO05D005542 6.5e-163 577.8 372 75.0
TPR.G16206 Trifolium pratense HOM05D004356 ORTHO05D005542 1.1e-162 577.0 402 69.2
Psat2g068800 Pisum sativum HOM05D004356 ORTHO05D005542 1.9e-162 576.2 403 70.7
Aqoxy1G00182 Aquilegia oxysepala HOM05D004356 ORTHO05D005542 4.2e-162 575.1 357 75.4
MSTRG.16368 Avicennia marina HOM05D004356 ORTHO05D005542 5.5e-162 574.7 400 69.8
Ah.05g170540 Amaranthus hybridus HOM05D004356 ORTHO05D005542 2.1e-161 572.8 340 78.8
AUR62027839 Chenopodium quinoa HOM05D004356 ORTHO05D005542 2.1e-161 572.8 400 70.0
Hund16880 Selenicereus undatus HOM05D004356 ORTHO05D005542 6.1e-161 571.2 409 69.4
arahy.Tifrunner.gnm1.ann1.JC6ZCB Arachis hypogaea HOM05D004356 ORTHO05D005542 1.4e-160 570.1 401 69.6
Glyma.14G178900 Glycine max HOM05D004356 ORTHO05D005542 1.4e-160 570.1 340 78.2
TPR.G30120 Trifolium pratense HOM05D004356 ORTHO05D005542 1.8e-160 569.7 402 69.4
Lj1g0019049 Lotus japonicus HOM05D004356 ORTHO05D005542 4.0e-160 568.5 412 69.4
Eucgr.F00397 Eucalyptus grandis HOM05D004356 ORTHO05D005542 8.8e-160 567.4 371 72.8
arahy.Tifrunner.gnm1.ann1.QY7301 Arachis hypogaea HOM05D004356 ORTHO05D005542 3.4e-159 565.5 397 69.8
arahy.Tifrunner.gnm1.ann1.VLAW7V Arachis hypogaea HOM05D004356 ORTHO05D005542 4.4e-159 565.1 340 77.1
CiPaw.16G056200 Carya illinoinensis HOM05D004356 ORTHO05D005542 4.4e-159 565.1 404 68.8
Peaxi162Scf00592g00454 Petunia axillaris HOM05D004356 ORTHO05D005542 4.4e-159 565.1 422 64.7
PGR102G1623 Punica granatum HOM05D004356 ORTHO05D005542 9.8e-159 563.9 396 68.4
VMungo0647G1889 Vigna mungo HOM05D004356 ORTHO05D005542 9.8e-159 563.9 401 69.1
Phvul.008G178500 Phaseolus vulgaris HOM05D004356 ORTHO05D005542 1.7e-158 563.1 400 69.0
CARHR096940 Cardamine hirsuta HOM05D004356 ORTHO05D005542 1.4e-157 560.1 398 69.1
Medtr5g065270 Medicago truncatula HOM05D004356 ORTHO05D005542 1.8e-157 559.7 396 68.7
AT3G21110 Arabidopsis thaliana HOM05D004356 ORTHO05D005542 2.4e-157 559.3 401 69.3
EL10Ac9g21432 Beta vulgaris HOM05D000128 ORTHO05D005542 2.4e-157 559.3 347 75.8
Aa31LG8G7830 Aethionema arabicum HOM05D004356 ORTHO05D005542 3.1e-157 558.9 406 69.0
AL3G35050 Arabidopsis lyrata HOM05D004356 ORTHO05D005542 5.4e-157 558.1 401 68.6
Glyma.02G211300 Glycine max HOM05D004356 ORTHO05D005542 5.4e-157 558.1 356 73.6
unitig_37.g12048 Utricularia gibba HOM05D004356 ORTHO05D005542 5.4e-157 558.1 332 76.5
Thhalv10020825m.g Eutrema salsugineum HOM05D004356 ORTHO05D005542 7.0e-157 557.8 402 68.9
Lalb_Chr10g0102631 Lupinus albus HOM05D004356 ORTHO05D005542 9.2e-157 557.4 397 69.3
ATR0022G038 Amborella trichopoda HOM05D004356 ORTHO05D005542 2.0e-156 556.2 373 70.2
A03p42020 Brassica napus HOM05D004356 ORTHO05D005542 3.5e-156 555.4 404 69.3
Cfa013712 Carpinus fangiana HOM05D004356 ORTHO05D005542 7.7e-156 554.3 406 68.7
A01p33740 Brassica napus HOM05D004356 ORTHO05D005542 1.3e-155 553.5 397 68.5
Carub.0003s2101 Capsella rubella HOM05D004356 ORTHO05D005542 2.3e-155 552.7 390 68.7
BcaB04g19136 Brassica carinata HOM05D004356 ORTHO05D005542 3.8e-155 552.0 397 68.0
BraA03t13356Z Brassica rapa HOM05D004356 ORTHO05D005542 5.0e-155 551.6 404 67.8
BolC3t17429H Brassica oleracea HOM05D004356 ORTHO05D005542 8.6e-155 550.8 399 67.9
Lj1g0006758 Lotus japonicus HOM05D004356 ORTHO05D005542 1.5e-154 550.1 406 69.5
Duzib106G0787 Durio zibethinus HOM05D004356 ORTHO05D005542 2.5e-154 549.3 387 68.7
BraA01t03487Z Brassica rapa HOM05D004356 ORTHO05D005542 3.3e-154 548.9 401 68.1
Carub.0003s2106 Capsella rubella HOM05D004356 ORTHO05D005542 2.1e-153 546.2 341 75.4
Os09g0467100 Oryza sativa ssp. japonica HOM05D004356 ORTHO05D005542 6.8e-152 541.2 331 74.9
CDE04G0095 Ceratophyllum demersum HOM05D004356 ORTHO05D005542 2.0e-151 539.7 368 69.8
Thecc.08G065800 Theobroma cacao HOM05D004356 ORTHO05D005542 3.4e-151 538.9 296 84.1
Zm00001eb284720 Zea mays HOM05D004356 ORTHO05D005542 7.5e-151 537.7 393 66.2
AUR62018997 Chenopodium quinoa HOM05D004356 ORTHO05D005542 9.8e-151 537.3 372 69.4
BcaB04g20611 Brassica carinata HOM05D004356 ORTHO05D005542 1.7e-150 536.6 397 67.8
Potri.017G051500 Populus trichocarpa HOM05D004356 ORTHO05D005542 2.9e-150 535.8 349 73.9
Sabra17G0038400 Salix brachista HOM05D004356 ORTHO05D005542 2.0e-148 529.6 402 68.4
Sabra17G0043000 Salix brachista HOM05D004356 ORTHO05D005542 2.0e-148 529.6 402 68.4
BcaC01g03528 Brassica carinata HOM05D004356 ORTHO05D004900 1.7e-147 526.6 382 67.3
Sabra17G0037700 Salix brachista HOM05D004356 ORTHO05D005542 3.0e-147 525.8 402 67.9
HPP92_011797 Vanilla planifolia HOM05D004356 ORTHO05D005542 8.6e-147 524.2 335 70.7
Sp3g19060 Schrenkiella parvula HOM05D004356 ORTHO05D005542 4.3e-146 521.9 402 66.2
arahy.Tifrunner.gnm1.ann1.3Z7WCZ Arachis hypogaea HOM05D004356 ORTHO05D005542 4.7e-145 518.5 392 65.6
Mapoly0044s0034 Marchantia polymorpha HOM05D004356 ORTHO05D005542 1.5e-143 513.5 331 71.3
SEGI_03509 Sequoiadendron giganteum HOM05D004356 ORTHO05D005542 1.5e-143 513.5 345 70.4
AagrBONN_evm.TU.Sc2ySwM_344.5470 Anthoceros agrestis HOM05D004356 ORTHO05D005542 1.7e-142 510.0 337 70.6
Prupe.1G526100 Prunus persica HOM05D004356 ORTHO05D005542 3.7e-142 508.8 283 81.6
C03p51440 Brassica napus HOM05D004356 ORTHO05D005542 4.9e-142 508.4 386 65.8
BolC1t04259H Brassica oleracea HOM05D004356 ORTHO05D005542 4.1e-141 505.4 360 68.3
C01p43120 Brassica napus HOM05D004356 ORTHO05D005542 7.0e-141 504.6 360 68.3
Carub.0043s0008 Capsella rubella HOM05D004356 ORTHO05D005542 1.2e-140 503.8 297 77.8
Pp3c23_9790 Physcomitrium patens HOM05D004356 ORTHO05D005542 7.3e-138 494.6 328 69.8
SMO340G0097 Selaginella moellendorffii HOM05D004356 ORTHO05D005542 6.2e-137 491.5 334 69.2
arahy.Tifrunner.gnm1.ann1.1YQ32R Arachis hypogaea HOM05D004356 ORTHO05D005542 3.4e-135 485.7 405 60.0
Carub.0043s0006 Capsella rubella HOM05D004356 ORTHO05D005542 1.7e-134 483.4 401 62.1
Lj4C732G13 Lonicera japonica HOM05D004356 ORTHO05D005542 1.1e-133 480.7 434 60.4
arahy.Tifrunner.gnm1.ann1.L8UQBM Arachis hypogaea HOM05D004356 ORTHO05D005542 7.3e-130 468.0 277 76.2
Sc23g0000510 Simmondsia chinensis HOM05D004356 ORTHO05D005542 2.6e-127 459.5 331 67.1
CBR_g27760 Chara braunii HOM05D004356 ORTHO05D005542 4.4e-127 458.8 334 63.5
Carub.0043s0010 Capsella rubella HOM05D004356 ORTHO05D005542 8.4e-126 454.5 337 66.5
SHI20358 Sapria himalayana HOM05D004356 ORTHO05D005542 3.2e-117 426.0 336 61.3
Cre03.g202113 Chlamydomonas reinhardtii HOM05D004356 ORTHO05D005542 4.2e-117 425.6 326 61.0
Cpa.g.sc198.38 Carica papaya HOM05D004356 ORTHO05D005542 7.1e-109 398.3 261 72.4
Gohir.A05G222001 Gossypium hirsutum HOM05D004356 ORTHO05D005542 1.3e-105 387.5 270 69.3
MCO12G379 Micromonas commoda HOM05D004356 ORTHO05D005542 1.3e-105 387.5 321 58.6
PRCOL_00002575 Prasinoderma coloniale HOM05D004356 ORTHO05D005542 2.4e-104 383.3 295 60.3
CiPaw.16G030800 Carya illinoinensis HOM05D004356 ORTHO05D005542 1.1e-96 357.8 332 56.3
Actinidia29604 Actinidia chinensis HOM05D004356 ORTHO05D005542 2.8e-89 333.2 188 83.0
Nn1g08498 Nelumbo nucifera HOM05D004356 ORTHO05D005542 2.9e-86 323.2 256 62.9
ClCG00G002050 Citrullus lanatus HOM05D004356 ORTHO05D005542 3.8e-86 322.8 250 64.4
arahy.Tifrunner.gnm1.ann1.PGQR8U Arachis hypogaea HOM05D004356 ORTHO05D005542 6.1e-84 315.5 303 55.1
ClCG08G011430 Citrullus lanatus HOM05D004356 ORTHO05D005542 5.5e-77 292.4 407 43.2
Nn1g08495 Nelumbo nucifera HOM05D004356 ORTHO05D005542 1.4e-75 287.7 158 84.2
RcHm_v2.0_Chr3g0491851 Rosa chinensis HOM05D004356 ORTHO05D005542 5.9e-71 272.3 275 51.6
Carub.0516s0001 Capsella rubella HOM05D004356 ORTHO05D005542 8.2e-65 251.9 143 79.0
DCAR_012871 Daucus carota HOM05D004356 ORTHO05D005542 5.5e-61 239.2 310 44.8
arahy.Tifrunner.gnm1.ann1.X0GHYT Arachis hypogaea HOM05D004356 ORTHO05D005542 5.9e-55 219.2 236 50.4
arahy.Tifrunner.gnm1.ann1.HK5GW2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.1e-53 214.9 266 47.0
arahy.Tifrunner.gnm1.ann1.F88CCI Arachis hypogaea HOM05D004356 ORTHO05D005542 1.6e-47 194.5 330 38.5
arahy.Tifrunner.gnm1.ann1.F3AJY4 Arachis hypogaea HOM05D004356 ORTHO05D005542 7.2e-45 185.7 183 55.7
Psat0s4321g0120 Pisum sativum HOM05D004356 ORTHO05D005542 1.6e-44 184.5 116 75.0
arahy.Tifrunner.gnm1.ann1.D1TUAT Arachis hypogaea HOM05D004356 ORTHO05D005542 3.0e-43 180.3 129 68.2
arahy.Tifrunner.gnm1.ann1.FASD2W Arachis hypogaea HOM05D004356 ORTHO05D005542 5.7e-42 176.0 183 54.6
arahy.Tifrunner.gnm1.ann1.MUPT6T Arachis hypogaea HOM05D004356 ORTHO05D005542 5.7e-42 176.0 183 54.6
arahy.Tifrunner.gnm1.ann1.6VP8YS Arachis hypogaea HOM05D004356 ORTHO05D005542 3.8e-38 163.3 122 65.6
arahy.Tifrunner.gnm1.ann1.H4UIY2 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-29 134.4 159 47.2
arahy.Tifrunner.gnm1.ann1.JXGW17 Arachis hypogaea HOM05D004356 ORTHO05D005542 1.9e-29 134.4 159 47.2
EL10As8g23848 Beta vulgaris HOM05D004356 ORTHO05D090264 2.8e-28 130.6 237 36.3
Cfa024383 Carpinus fangiana HOM05D004356 ORTHO05D124745 6.2e-20 102.8 169 38.5
Zm00001eb297900 Zea mays HOM05D004356 ORTHO05D005542 1.5e-18 98.2 53 77.4
Zm00001eb297960 Zea mays HOM05D004356 ORTHO05D444542 1.5e-18 98.2 53 77.4
arahy.Tifrunner.gnm1.ann1.8IDC4C Arachis hypogaea HOM05D004356 ORTHO05D005542 1.2e-12 78.6 51 68.6
arahy.Tifrunner.gnm1.ann1.J07EWC Arachis hypogaea HOM05D004356 ORTHO05D005542 4.6e-07 60.1 38 73.7
SHI20361 Sapria himalayana HOM05D004356 ORTHO05D365714 6.0e-07 59.7 44 63.6
arahy.Tifrunner.gnm1.ann1.E3H3WY Arachis hypogaea HOM05D000075 ORTHO05D000073 1.7e-06 58.2 43 65.1


User provided reference genes

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