Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 7.0e-273 943.3 479 100.0
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 4.4e-182 641.7 478 72.4
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 5.0e-178 628.2 511 70.3
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 3.2e-172 609.0 502 66.7
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 2.8e-168 595.9 508 64.6
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 8.0e-168 594.3 531 62.7
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 1.4e-164 583.6 530 62.3
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 9.2e-164 580.9 533 61.7
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 1.0e-162 577.4 510 63.3
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 7.3e-161 571.2 530 61.3
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 9.5e-161 570.9 528 61.7
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 2.8e-160 569.3 535 60.4
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 4.7e-160 568.5 508 62.0
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 1.4e-159 567.0 519 60.9
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 6.4e-157 558.1 528 60.6
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 8.3e-157 557.8 534 59.2
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 8.3e-157 557.8 502 62.5
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 1.4e-156 557.0 515 61.6
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 2.4e-156 556.2 537 60.0
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 4.6e-155 552.0 543 58.2
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 6.0e-155 551.6 508 62.4
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 6.0e-155 551.6 529 60.5
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 7.8e-155 551.2 531 59.9
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 7.8e-155 551.2 532 59.8
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 7.8e-155 551.2 515 60.8
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 2.3e-154 549.7 532 59.6
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 8.6e-154 547.7 529 60.1
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 1.1e-153 547.4 519 59.5
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 2.5e-153 546.2 515 60.2
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 4.3e-153 545.4 540 60.9
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 2.1e-152 543.1 525 60.2
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 2.1e-152 543.1 529 60.1
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 6.2e-152 541.6 533 59.8
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 4.0e-151 538.9 527 59.2
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 4.0e-151 538.9 530 59.8
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 6.8e-151 538.1 508 60.2
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.2e-150 537.3 525 60.2
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.5e-150 537.0 529 59.7
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 3.4e-150 535.8 538 58.2
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 4.4e-150 535.4 529 59.5
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 3.7e-149 532.3 523 58.7
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 4.9e-149 531.9 538 57.8
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 4.9e-149 531.9 585 53.7
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 1.1e-148 530.8 496 60.9
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 2.4e-148 529.6 511 60.5
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 5.4e-148 528.5 518 57.9
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 9.2e-148 527.7 516 57.6
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.6e-147 526.9 516 58.3
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 6.0e-147 525.0 534 58.2
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 3.9e-146 522.3 534 57.7
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 4.3e-145 518.8 527 57.5
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 1.2e-144 517.3 527 58.1
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 1.6e-144 516.9 521 58.2
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 3.6e-144 515.8 530 58.1
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 4.7e-144 515.4 533 56.7
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 1.8e-143 513.5 609 52.1
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 1.8e-143 513.5 534 57.5
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 8.9e-143 511.1 529 56.5
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 1.2e-142 510.8 513 58.3
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 4.4e-142 508.8 523 57.2
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 5.8e-142 508.4 499 60.3
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 1.7e-141 506.9 525 56.4
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 3.8e-141 505.8 522 56.5
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 6.4e-141 505.0 529 56.0
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 1.1e-140 504.2 512 58.2
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 1.9e-140 503.4 537 54.7
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 2.4e-140 503.1 513 57.7
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 7.1e-140 501.5 507 57.6
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 9.3e-140 501.1 535 56.1
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 2.1e-139 500.0 512 58.2
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 2.7e-139 499.6 475 59.2
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 4.6e-139 498.8 574 53.7
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 7.8e-139 498.0 533 54.8
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 7.8e-139 498.0 525 55.8
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 2.3e-138 496.5 533 54.8
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 3.9e-138 495.7 468 59.6
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 8.7e-138 494.6 513 57.9
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 1.1e-137 494.2 516 55.8
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 9.6e-137 491.1 513 56.3
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 8.1e-136 488.0 503 56.5
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 1.1e-135 487.6 526 56.7
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 4.0e-135 485.7 524 55.9
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 5.3e-135 485.3 516 56.8
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 2.6e-134 483.0 523 57.0
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 4.4e-134 482.3 519 55.7
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 1.3e-133 480.7 532 55.1
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 8.4e-133 478.0 522 53.8
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 1.1e-132 477.6 522 55.9
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 1.4e-132 477.2 484 58.9
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 5.4e-132 475.3 528 54.4
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 1.6e-131 473.8 516 54.1
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 6.0e-131 471.9 532 52.6
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 1.0e-130 471.1 519 56.6
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 3.0e-130 469.5 535 53.8
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 1.9e-129 466.8 540 51.9
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 4.3e-129 465.7 484 56.0
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.6e-128 462.6 656 45.6
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 7.9e-123 444.9 458 56.6
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 3.3e-121 439.5 506 55.5
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 5.6e-121 438.7 506 55.5
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 9.6e-121 438.0 509 56.0
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 9.6e-121 438.0 509 56.0
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 4.8e-120 435.6 509 55.8
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 4.8e-120 435.6 502 54.0
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 2.7e-115 419.9 511 52.1
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 5.1e-114 415.6 524 49.8
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 4.1e-111 406.0 426 55.9
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 4.5e-110 402.5 393 58.8
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 3.2e-108 396.4 532 47.9
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 1.0e-106 391.3 489 51.7
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.8e-103 380.6 518 46.5
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 7.2e-100 368.6 502 47.4
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 4.5e-94 349.4 316 59.5
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 1.9e-92 344.0 535 43.4
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 1.7e-80 304.3 499 43.3
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 2.2e-77 293.9 158 95.6
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.5e-76 291.2 479 42.2
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 6.1e-75 285.8 350 48.9
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.2e-65 255.0 347 45.8
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 1.2e-57 228.4 314 46.8
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 5.7e-57 226.1 438 38.4
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 1.0e-45 188.7 241 44.0
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 7.3e-44 182.6 441 35.1
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 3.8e-16 90.5 182 30.2
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.7e-14 84.3 205 28.8
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 1.3e-13 82.0 201 32.3
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.3e-13 81.3 207 29.5
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 3.9e-13 80.5 221 30.3
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 3.4e-09 67.4 56 64.3
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 7.9e-06 56.2 49 57.1


User provided reference genes

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