Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 7.7e-83 310.5 159 100.0
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 4.8e-77 291.2 157 92.4
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 1.8e-76 289.3 159 89.9
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 3.5e-75 285.0 157 90.4
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 1.1e-68 263.5 159 81.1
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 7.7e-67 257.3 159 79.2
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 1.7e-66 256.1 159 78.6
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 2.9e-66 255.4 159 78.6
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 3.8e-66 255.0 158 77.8
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 3.8e-66 255.0 154 81.8
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 1.5e-65 253.1 154 78.6
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 2.5e-65 252.3 154 81.2
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 3.2e-65 251.9 158 77.8
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 4.2e-65 251.5 154 81.2
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 5.5e-65 251.1 158 77.2
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 7.2e-65 250.8 154 77.9
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 7.2e-65 250.8 154 80.5
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 1.2e-64 250.0 158 77.8
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 1.6e-64 249.6 158 77.8
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 2.1e-64 249.2 158 76.6
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 2.1e-64 249.2 154 78.6
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 2.7e-64 248.8 154 78.6
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 2.7e-64 248.8 158 77.2
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 4.7e-64 248.1 158 75.9
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 4.7e-64 248.1 158 75.9
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 6.1e-64 247.7 154 79.2
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 8.0e-64 247.3 158 75.9
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 8.0e-64 247.3 158 75.9
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 8.0e-64 247.3 158 75.9
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 8.0e-64 247.3 158 75.9
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 8.0e-64 247.3 158 75.9
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 8.0e-64 247.3 158 75.9
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 8.0e-64 247.3 158 74.7
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.4e-63 246.5 159 76.7
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 2.3e-63 245.7 154 77.9
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 2.3e-63 245.7 154 76.0
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 2.3e-63 245.7 154 78.6
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 3.0e-63 245.4 158 77.2
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 4.0e-63 245.0 154 78.6
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 5.2e-63 244.6 157 76.4
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 5.2e-63 244.6 154 77.9
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 5.2e-63 244.6 158 75.9
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 5.2e-63 244.6 154 76.0
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 6.8e-63 244.2 158 74.7
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 6.8e-63 244.2 159 75.5
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 8.8e-63 243.8 154 76.6
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.2e-62 243.4 158 74.7
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.2e-62 243.4 159 74.2
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.5e-62 243.0 158 74.7
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.0e-62 242.7 154 76.0
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.0e-62 242.7 154 76.0
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 2.0e-62 242.7 159 73.6
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.6e-62 242.3 153 76.5
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.6e-62 242.3 153 76.5
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 3.4e-62 241.9 154 74.0
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 4.4e-62 241.5 154 75.3
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 5.7e-62 241.1 154 76.0
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 7.5e-62 240.7 159 75.5
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 7.5e-62 240.7 150 76.7
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 9.8e-62 240.4 158 74.1
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 1.3e-61 240.0 154 74.0
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.8e-61 238.8 150 76.0
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 2.8e-61 238.8 158 75.9
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 2.8e-61 238.8 158 75.9
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 3.7e-61 238.4 158 73.4
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 3.7e-61 238.4 158 75.3
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 4.9e-61 238.0 158 72.8
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 4.9e-61 238.0 157 73.2
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 8.3e-61 237.3 158 72.8
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 8.3e-61 237.3 154 75.3
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.4e-60 236.5 157 73.2
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 1.4e-60 236.5 158 72.8
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 1.4e-60 236.5 153 77.1
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 3.1e-60 235.3 154 72.7
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 3.1e-60 235.3 137 84.7
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 4.1e-60 235.0 158 72.2
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 4.1e-60 235.0 154 75.3
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 7.0e-60 234.2 158 74.7
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 9.1e-60 233.8 153 76.5
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 2.0e-59 232.6 154 74.0
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 2.0e-59 232.6 154 74.0
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 2.0e-59 232.6 154 72.1
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 2.7e-59 232.3 148 77.7
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 4.5e-59 231.5 153 75.2
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 4.5e-59 231.5 154 72.1
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 4.5e-59 231.5 154 72.1
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 4.5e-59 231.5 158 72.2
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 1.0e-58 230.3 154 74.7
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 1.3e-58 229.9 158 72.2
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 1.3e-58 229.9 158 72.2
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 1.3e-58 229.9 158 72.2
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 1.3e-58 229.9 158 72.2
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.3e-58 229.9 158 72.2
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 2.9e-58 228.8 154 72.7
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 3.8e-58 228.4 150 74.0
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 3.8e-58 228.4 158 72.8
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 3.8e-58 228.4 154 73.4
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 6.6e-58 227.6 150 74.0
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 8.6e-58 227.3 157 73.2
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 8.6e-58 227.3 157 73.2
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 1.1e-57 226.9 154 72.1
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 1.1e-57 226.9 154 72.7
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 1.5e-57 226.5 150 73.3
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 1.9e-57 226.1 149 73.8
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 1.9e-57 226.1 149 73.8
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 1.9e-57 226.1 149 73.8
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 3.3e-57 225.3 143 78.3
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 9.5e-57 223.8 154 71.4
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 1.2e-56 223.4 153 68.0
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 6.1e-56 221.1 159 66.7
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 2.3e-55 219.2 154 68.2
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 2.0e-54 216.1 137 76.6
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 2.6e-54 215.7 203 56.7
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 2.9e-53 212.2 135 77.0
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 4.9e-53 211.5 244 49.2
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 1.1e-52 210.3 144 70.1
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.2e-51 206.8 144 69.4
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 2.0e-51 206.1 123 82.9
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 5.6e-49 198.0 207 52.7
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 7.3e-49 197.6 155 63.9
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 1.2e-46 190.3 125 72.0
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 2.0e-46 189.5 156 60.3
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 4.4e-46 188.3 191 53.4
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 7.5e-46 187.6 158 57.6
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 3.2e-44 182.2 123 72.4
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 3.9e-42 175.3 111 74.8
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 3.9e-42 175.3 141 67.4
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 1.1e-41 173.7 297 38.7
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 3.2e-36 155.6 93 81.7
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 1.6e-35 153.3 107 74.8
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 6.6e-34 147.9 133 57.1
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 4.3e-33 145.2 98 73.5
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 3.4e-30 135.6 154 44.8
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 7.1e-28 127.9 132 52.3
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 9.2e-28 127.5 77 76.6
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 2.1e-27 126.3 149 45.0
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 2.1e-27 126.3 149 45.0
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 1.7e-26 123.2 152 42.1
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 4.3e-25 118.6 146 52.1
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.2e-24 117.1 138 43.5
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 6.8e-23 111.3 85 64.7
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.5e-22 110.2 79 70.9
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.0e-22 109.8 96 61.5
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.0e-22 109.8 96 61.5
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 2.6e-22 109.4 65 80.0
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 2.9e-21 105.9 146 39.0
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 4.9e-21 105.1 64 79.7
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 7.1e-20 101.3 64 76.6
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 3.5e-19 99.0 127 41.7
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 4.6e-19 98.6 101 58.4
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 7.3e-17 91.3 78 62.8
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 1.6e-08 63.5 69 52.2
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 4.8e-08 62.0 69 50.7
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 4.5e-06 55.5 62 50.0
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 9.9e-06 54.3 43 67.4


User provided reference genes

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