Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 1.1e-57 226.9 154 100.0
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 4.0e-44 181.8 92 91.3
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 2.0e-43 179.5 92 90.2
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 2.2e-42 176.0 90 87.8
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 7.1e-41 171.0 91 83.5
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 7.1e-41 171.0 91 83.5
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 7.1e-41 171.0 91 83.5
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 7.8e-40 167.5 98 78.6
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 1.0e-39 167.2 82 90.2
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.7e-39 166.4 90 82.2
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 3.9e-39 165.2 88 80.7
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 5.1e-39 164.9 92 79.3
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 8.6e-39 164.1 88 84.1
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 8.6e-39 164.1 91 81.3
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 8.6e-39 164.1 91 82.4
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 1.5e-38 163.3 83 88.0
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 1.5e-38 163.3 80 87.5
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 1.5e-38 163.3 98 77.6
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 4.3e-38 161.8 83 81.9
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 4.3e-38 161.8 89 76.4
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 7.3e-38 161.0 92 78.3
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 7.3e-38 161.0 89 77.5
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 7.3e-38 161.0 94 74.5
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 7.3e-38 161.0 80 87.5
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 9.5e-38 160.6 89 75.3
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 1.6e-37 159.8 89 78.7
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.6e-37 159.8 91 75.8
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 1.6e-37 159.8 77 89.6
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 1.6e-37 159.8 77 89.6
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 2.1e-37 159.5 103 71.8
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 2.8e-37 159.1 83 84.3
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 2.8e-37 159.1 80 83.8
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 2.8e-37 159.1 90 78.9
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 3.6e-37 158.7 82 81.7
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 3.6e-37 158.7 75 88.0
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 4.7e-37 158.3 90 73.3
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 4.7e-37 158.3 89 75.3
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 6.2e-37 157.9 91 76.9
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 6.2e-37 157.9 88 78.4
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 6.2e-37 157.9 90 75.6
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 6.2e-37 157.9 83 80.7
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 6.2e-37 157.9 82 82.9
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 6.2e-37 157.9 75 89.3
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 8.1e-37 157.5 96 74.0
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.1e-36 157.1 92 77.2
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 1.1e-36 157.1 85 77.6
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 1.1e-36 157.1 89 75.3
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 1.4e-36 156.8 90 75.6
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 1.4e-36 156.8 92 76.1
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 1.4e-36 156.8 91 76.9
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 1.8e-36 156.4 92 77.2
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 1.8e-36 156.4 92 77.2
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 1.8e-36 156.4 90 73.3
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.8e-36 156.4 90 73.3
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 2.3e-36 156.0 91 73.6
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 2.3e-36 156.0 80 85.0
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 2.3e-36 156.0 89 74.2
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 3.1e-36 155.6 89 70.8
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 3.1e-36 155.6 89 70.8
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 4.0e-36 155.2 84 81.0
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 4.0e-36 155.2 83 80.7
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 4.0e-36 155.2 83 80.7
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 4.0e-36 155.2 89 74.2
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 5.2e-36 154.8 89 76.4
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 5.2e-36 154.8 83 79.5
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 5.2e-36 154.8 83 83.1
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 5.2e-36 154.8 83 80.7
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 6.8e-36 154.5 90 73.3
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 8.9e-36 154.1 83 81.9
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 8.9e-36 154.1 81 81.5
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 8.9e-36 154.1 81 81.5
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 8.9e-36 154.1 87 74.7
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 1.2e-35 153.7 79 83.5
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 1.5e-35 153.3 75 85.3
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 1.5e-35 153.3 90 72.2
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 1.5e-35 153.3 90 72.2
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 1.5e-35 153.3 89 71.9
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 2.0e-35 152.9 75 85.3
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 2.0e-35 152.9 81 82.7
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 3.4e-35 152.1 98 68.4
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 4.4e-35 151.8 90 74.4
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 5.8e-35 151.4 91 74.7
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 5.8e-35 151.4 92 70.7
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 7.6e-35 151.0 84 77.4
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 9.9e-35 150.6 75 82.7
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 9.9e-35 150.6 87 72.4
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 1.7e-34 149.8 84 77.4
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.7e-34 149.8 99 69.7
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 2.2e-34 149.4 91 71.4
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 3.7e-34 148.7 89 73.0
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 3.7e-34 148.7 87 71.3
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 3.7e-34 148.7 75 81.3
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 8.4e-34 147.5 89 70.8
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 1.1e-33 147.1 87 73.6
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 1.1e-33 147.1 87 73.6
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 1.1e-33 147.1 88 72.7
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.4e-33 146.7 83 75.9
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.4e-33 146.7 83 75.9
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 1.4e-33 146.7 89 71.9
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 2.4e-33 146.0 75 82.7
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 3.2e-33 145.6 91 72.5
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 5.4e-33 144.8 75 78.7
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 3.5e-32 142.1 86 70.9
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 4.6e-32 141.7 89 67.4
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 6.0e-32 141.4 85 72.9
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 7.8e-32 141.0 90 70.0
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.7e-31 139.8 107 61.7
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 2.3e-31 139.4 75 80.0
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 6.6e-31 137.9 73 76.7
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 6.6e-31 137.9 73 76.7
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 9.6e-30 134.0 68 88.2
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 3.1e-28 129.0 89 65.2
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 3.1e-28 129.0 91 67.0
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 4.4e-27 125.2 89 62.9
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 9.9e-27 124.0 77 70.1
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 7.1e-25 117.9 81 66.7
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 1.0e-23 114.0 103 58.3
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.3e-23 113.6 52 92.3
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.7e-23 113.2 52 92.3
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 2.3e-23 112.8 83 63.9
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 6.6e-23 111.3 52 88.5
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.1e-22 110.5 115 47.8
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 1.1e-22 110.5 69 72.5
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 1.5e-22 110.2 51 90.2
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 2.5e-22 109.4 53 84.9
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 7.6e-19 97.8 51 82.4
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 1.3e-18 97.1 74 54.1
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 3.8e-18 95.5 74 58.1
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 1.9e-17 93.2 70 62.9
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 7.1e-17 91.3 58 65.5
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 2.1e-16 89.7 74 52.7
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 3.9e-15 85.5 60 66.7
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 2.5e-14 82.8 84 47.6
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 5.3e-12 75.1 42 73.8
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 2.6e-11 72.8 37 78.4
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 4.5e-11 72.0 75 44.0
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 2.2e-10 69.7 44 65.9
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 2.2e-10 69.7 37 83.8
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 4.9e-10 68.6 43 67.4
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 8.4e-10 67.8 74 43.2
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 6.0e-08 61.6 38 68.4
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 2.3e-07 59.7 46 58.7


User provided reference genes

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