Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 0.0e+00 1864.0 1016 100.0
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 0.0e+00 1615.1 1034 84.8
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 0.0e+00 1604.3 1025 84.6
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 0.0e+00 1375.5 1019 70.8
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 0.0e+00 1361.3 1019 70.3
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 0.0e+00 1357.0 1028 69.9
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 0.0e+00 1350.1 1018 69.9
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1345.1 1022 69.2
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 0.0e+00 1337.0 1035 70.0
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 0.0e+00 1332.4 1018 69.7
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 0.0e+00 1331.6 1017 69.3
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 0.0e+00 1330.1 1025 69.9
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 0.0e+00 1327.0 1019 68.8
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 0.0e+00 1326.6 1029 68.3
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 0.0e+00 1324.7 1025 68.5
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1320.4 1018 68.9
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1318.9 1022 68.2
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 0.0e+00 1316.6 1018 69.8
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 0.0e+00 1312.7 1029 68.1
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 0.0e+00 1311.2 1023 67.8
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 0.0e+00 1309.7 1021 68.0
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1309.3 1024 68.8
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1305.4 1022 68.1
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 0.0e+00 1305.4 1022 68.1
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 0.0e+00 1303.9 1017 68.3
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1301.6 1032 66.7
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 0.0e+00 1300.0 1034 66.9
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 0.0e+00 1296.6 1022 67.7
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 0.0e+00 1295.0 1019 68.5
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 0.0e+00 1295.0 1033 66.7
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 0.0e+00 1294.3 1025 67.5
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 0.0e+00 1292.7 1020 67.6
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1292.7 1022 67.0
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 0.0e+00 1292.3 1017 68.0
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 0.0e+00 1291.2 1019 68.5
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 0.0e+00 1290.4 1024 67.6
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 0.0e+00 1290.0 1033 68.1
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1288.9 1018 68.0
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 0.0e+00 1288.5 1038 66.5
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 0.0e+00 1286.9 1019 67.0
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 0.0e+00 1285.8 1008 67.9
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1280.0 1025 66.9
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 0.0e+00 1278.8 1022 66.7
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1278.1 1023 66.3
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 0.0e+00 1278.1 1017 66.7
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1275.4 1023 66.2
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1275.0 1018 66.9
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1274.6 1023 66.1
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 0.0e+00 1274.6 1002 67.8
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1273.8 1033 66.5
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 0.0e+00 1271.1 1025 66.4
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1266.5 1017 66.2
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1264.2 1023 66.0
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 0.0e+00 1262.7 1025 66.0
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1261.9 1021 65.8
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 0.0e+00 1260.7 1020 65.8
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 0.0e+00 1260.7 1025 66.2
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 0.0e+00 1260.4 1023 65.9
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 0.0e+00 1260.0 1025 65.7
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 0.0e+00 1259.6 1017 65.7
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 0.0e+00 1258.4 1007 66.2
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1258.0 1007 66.2
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1256.1 1021 65.8
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 0.0e+00 1255.7 1023 68.1
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 0.0e+00 1255.0 1059 64.6
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 0.0e+00 1253.4 1025 65.2
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 0.0e+00 1251.9 1015 66.9
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1251.1 1017 65.7
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 0.0e+00 1250.3 967 68.0
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 0.0e+00 1249.6 1037 65.7
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 0.0e+00 1246.1 1022 66.4
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1244.2 1029 64.9
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 0.0e+00 1243.4 1017 64.9
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1242.6 1026 64.4
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 0.0e+00 1242.6 1017 66.1
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 0.0e+00 1239.6 962 68.6
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1236.1 1019 65.0
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 0.0e+00 1235.3 1019 64.6
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 0.0e+00 1234.2 1067 62.9
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1233.4 1017 64.4
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 0.0e+00 1224.5 1043 63.5
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 0.0e+00 1224.2 954 66.8
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1223.8 1055 63.2
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 0.0e+00 1223.4 938 67.6
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 0.0e+00 1218.0 1006 63.9
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 0.0e+00 1212.6 1056 62.3
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1212.6 1017 62.9
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 0.0e+00 1207.6 1086 61.8
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1205.7 1017 63.3
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 0.0e+00 1199.1 1012 63.8
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 0.0e+00 1185.2 944 65.5
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1177.2 946 64.6
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 0.0e+00 1171.4 967 63.3
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 0.0e+00 1161.7 1017 61.8
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 0.0e+00 1157.5 978 62.3
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 0.0e+00 1156.0 1023 62.2
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 0.0e+00 1155.2 1007 62.2
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 0.0e+00 1148.3 1029 59.9
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 0.0e+00 1140.6 918 65.9
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 0.0e+00 1135.2 1074 58.8
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 0.0e+00 1123.6 786 74.9
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 0.0e+00 1113.2 968 60.6
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 0.0e+00 1102.8 1025 58.7
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 0.0e+00 1096.3 795 72.2
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 0.0e+00 1082.8 853 65.5
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 2.4e-310 1068.9 789 71.2
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 1.5e-293 1013.1 835 66.1
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 3.4e-285 985.3 990 52.7
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 4.8e-279 964.9 957 52.4
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 1.8e-278 963.0 1030 50.6
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 7.9e-274 947.6 705 70.6
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 3.0e-273 945.7 1007 52.2
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 2.0e-264 916.4 744 66.8
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 1.3e-255 887.1 972 49.6
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 3.7e-247 859.0 649 68.7
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 1.4e-230 803.9 984 46.0
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 5.6e-227 792.0 614 68.4
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 1.8e-225 786.9 620 68.4
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 7.1e-214 748.4 563 67.3
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 3.6e-210 736.1 631 63.2
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 9.6e-203 711.4 543 68.5
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 2.7e-197 693.3 689 52.2
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 5.3e-193 679.1 971 45.5
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 7.6e-184 648.7 600 57.8
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 1.5e-168 597.8 1020 40.9
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 3.2e-158 563.5 563 52.6
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 3.3e-139 500.4 1039 32.9
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 2.4e-137 494.2 619 45.2
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 8.0e-133 479.2 577 50.1
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 1.7e-130 471.5 397 63.2
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 1.7e-130 471.5 951 32.7
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 5.0e-119 433.3 944 32.0
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 2.5e-118 431.0 319 68.7
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 4.7e-109 400.2 568 45.6
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 1.1e-105 389.0 276 73.6
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 5.0e-103 380.2 566 46.6
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 6.6e-103 379.8 384 58.6
HPP92_014542 Vanilla planifolia HOM05D003801 ORTHO05D004812 1.5e-102 378.6 351 58.4
MBI15_g33038_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 2.8e-101 374.4 287 70.0
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 1.3e-98 365.5 287 67.6
MBI07_g35968_MAGBIO Magnolia biondii HOM05D003801 ORTHO05D004812 4.9e-98 363.6 279 70.6
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 8.6e-95 352.8 407 47.7
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 5.2e-92 343.6 278 68.3
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 5.8e-91 340.1 265 64.9
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 9.9e-91 339.3 559 40.4
Lj6A615T90 Lonicera japonica HOM05D003801 ORTHO05D004812 4.9e-82 310.5 402 49.0
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 8.4e-82 309.7 300 60.3
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 6.9e-76 290.0 220 66.8
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 1.5e-70 272.3 244 56.1
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 6.2e-69 266.9 242 63.6
Actinidia23184 Actinidia chinensis HOM05D003801 ORTHO05D004812 2.6e-67 261.5 426 42.5
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.6e-67 261.5 579 33.7
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 4.5e-67 260.8 190 74.2
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 1.1e-65 256.1 219 56.6
Sabra19G0124600 Salix brachista HOM05D003801 ORTHO05D004812 7.6e-59 233.4 260 53.1
SHI19239 Sapria himalayana HOM05D003801 ORTHO05D004812 6.7e-55 220.3 313 44.1
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 6.3e-53 213.8 226 54.4
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 2.6e-51 208.4 154 70.1
Cc01_g14920 Coffea canephora HOM05D003801 ORTHO05D004812 6.5e-50 203.8 189 58.2
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 2.1e-48 198.7 427 36.5
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 1.4e-47 196.1 416 36.5
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.3e-47 195.3 164 64.6
CANSAT80G1859 Cannabis sativa HOM05D003801 ORTHO05D004812 3.7e-45 188.0 134 69.4
Hma1.2p1_1586F.1_g292120 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.6e-40 172.6 175 56.6
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 3.1e-36 158.3 124 65.3
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 3.9e-31 141.4 159 50.3
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 3.3e-30 138.3 77 83.1
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 1.3e-29 136.3 334 32.9
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 2.4e-28 132.1 234 39.7
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 2.0e-27 129.0 136 50.0
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 5.0e-26 124.4 412 30.3
AL1G16970 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.9e-25 122.5 75 76.0
AL1G17100 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 1.9e-25 122.5 75 76.0
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 2.7e-24 118.6 74 74.3
SHI19242 Sapria himalayana HOM05D003801 ORTHO05D004812 3.6e-24 118.2 122 50.8
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 2.4e-20 105.5 170 39.4
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 1.6e-19 102.8 174 37.9
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 5.9e-19 100.9 66 74.2
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 2.5e-17 95.5 179 38.0
Os10g0492101 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 3.6e-16 91.7 164 40.9
VMungo1215G2515 Vigna mungo HOM05D003801 ORTHO05D436020 3.4e-06 58.5 53 56.6


User provided reference genes

Program Settings