Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 1.1e-41 172.9 92 100.0
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 1.6e-35 152.5 91 86.8
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 1.6e-32 142.5 83 88.0
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 1.0e-31 139.8 91 75.8
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 8.8e-31 136.7 91 74.7
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 2.6e-30 135.2 89 80.9
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.7e-29 132.5 89 78.7
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.7e-29 132.5 90 74.4
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.8e-29 131.7 91 73.6
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 4.8e-29 131.0 84 77.4
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 6.3e-29 130.6 83 77.1
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 8.2e-29 130.2 91 74.7
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 8.2e-29 130.2 82 76.8
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 8.2e-29 130.2 82 76.8
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 8.2e-29 130.2 82 76.8
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.1e-28 129.8 84 76.2
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 1.8e-28 129.0 90 73.3
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.8e-28 129.0 90 72.2
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 2.4e-28 128.6 90 72.2
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 2.4e-28 128.6 82 76.8
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 3.1e-28 128.3 90 73.3
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 4.1e-28 127.9 82 75.6
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 4.1e-28 127.9 91 72.5
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 5.3e-28 127.5 89 73.0
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 7.0e-28 127.1 82 76.8
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 9.1e-28 126.7 89 74.2
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 2.0e-27 125.6 90 71.1
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 2.0e-27 125.6 82 76.8
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 2.7e-27 125.2 90 70.0
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 3.5e-27 124.8 90 76.7
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 3.5e-27 124.8 82 76.8
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 5.9e-27 124.0 90 68.9
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 7.7e-27 123.6 90 70.0
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 7.7e-27 123.6 91 69.2
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 7.7e-27 123.6 91 70.3
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 1.3e-26 122.9 92 69.6
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.7e-26 122.5 91 68.1
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 1.7e-26 122.5 91 69.2
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 2.9e-26 121.7 91 63.7
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 2.9e-26 121.7 82 73.2
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 2.9e-26 121.7 91 65.9
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 2.9e-26 121.7 82 72.0
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 3.8e-26 121.3 81 74.1
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 3.8e-26 121.3 88 69.3
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 5.0e-26 120.9 92 70.7
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 6.5e-26 120.6 84 71.4
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 6.5e-26 120.6 83 73.5
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 1.1e-25 119.8 84 70.2
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 1.5e-25 119.4 82 65.9
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.5e-25 119.4 89 68.5
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 1.5e-25 119.4 90 63.3
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.9e-25 119.0 80 72.5
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 3.2e-25 118.2 83 67.5
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 3.2e-25 118.2 81 71.6
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 3.2e-25 118.2 78 75.6
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 3.2e-25 118.2 91 67.0
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 4.2e-25 117.9 89 69.7
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 5.5e-25 117.5 91 64.8
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 7.2e-25 117.1 89 66.3
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 9.4e-25 116.7 81 69.1
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 1.2e-24 116.3 83 67.5
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 1.2e-24 116.3 90 63.3
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 1.6e-24 115.9 90 64.4
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.6e-24 115.9 80 71.2
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 1.6e-24 115.9 80 71.2
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 2.1e-24 115.5 88 68.2
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 2.1e-24 115.5 82 68.3
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 2.7e-24 115.2 83 68.7
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 2.7e-24 115.2 90 65.6
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 2.7e-24 115.2 81 71.6
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 3.6e-24 114.8 81 72.8
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 3.6e-24 114.8 83 68.7
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 6.1e-24 114.0 83 69.9
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 8.0e-24 113.6 83 75.9
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 8.0e-24 113.6 91 61.5
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 8.0e-24 113.6 91 63.7
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.0e-23 113.2 91 60.4
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.0e-23 113.2 81 69.1
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 1.4e-23 112.8 91 60.4
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.4e-23 112.8 91 60.4
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 1.8e-23 112.5 90 60.0
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 2.3e-23 112.1 91 61.5
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 2.3e-23 112.1 91 63.7
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 4.0e-23 111.3 85 67.1
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.5e-22 109.4 91 59.3
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 1.5e-22 109.4 81 63.0
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 2.6e-22 108.6 90 63.3
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 2.6e-22 108.6 90 63.3
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 3.4e-22 108.2 82 67.1
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 4.4e-22 107.8 76 68.4
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 5.7e-22 107.5 67 77.6
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 5.7e-22 107.5 91 59.3
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 5.7e-22 107.5 90 60.0
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 9.8e-22 106.7 76 68.4
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 3.7e-21 104.8 83 57.8
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 6.3e-21 104.0 67 73.1
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 6.3e-21 104.0 83 57.8
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 8.3e-21 103.6 82 58.5
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 8.3e-21 103.6 82 58.5
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 3.1e-20 101.7 83 55.4
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 3.1e-20 101.7 84 57.1
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 3.1e-20 101.7 84 58.3
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 3.1e-20 101.7 83 62.7
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 1.2e-19 99.8 80 58.8
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 1.6e-19 99.4 80 58.8
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 2.7e-19 98.6 91 54.9
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 3.5e-19 98.2 76 60.5
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 7.7e-19 97.1 88 54.5
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 7.7e-19 97.1 83 53.0
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 1.0e-18 96.7 80 57.5
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 1.0e-18 96.7 80 57.5
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 1.3e-18 96.3 80 57.5
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 1.7e-18 95.9 80 57.5
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 2.2e-18 95.5 80 56.2
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 2.2e-18 95.5 80 57.5
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 2.9e-18 95.1 80 56.2
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 3.8e-18 94.7 80 55.0
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 3.8e-18 94.7 80 56.2
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 3.8e-18 94.7 80 55.0
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 3.8e-18 94.7 80 56.2
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 6.5e-18 94.0 79 55.7
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 8.5e-18 93.6 80 55.0
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 8.5e-18 93.6 65 70.8
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 1.1e-17 93.2 80 56.2
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 1.1e-17 93.2 80 56.2
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 1.1e-17 93.2 80 56.2
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.5e-17 92.8 70 65.7
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 1.9e-17 92.4 81 58.0
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 5.5e-17 90.9 73 60.3
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 5.5e-17 90.9 87 52.9
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 9.5e-17 90.1 82 54.9
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 1.2e-16 89.7 80 52.5
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.2e-16 89.7 93 52.7
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 6.1e-16 87.4 81 55.6
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 8.0e-16 87.0 60 71.7
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 2.3e-15 85.5 90 47.8
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 1.5e-14 82.8 73 54.8
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 1.5e-14 82.8 73 54.8
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 2.0e-14 82.4 73 54.8
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 4.4e-14 81.3 73 53.4
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 8.3e-13 77.0 54 70.4
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 2.4e-12 75.5 84 50.0
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 1.6e-11 72.8 79 41.8
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 2.9e-10 68.6 72 52.8
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 1.1e-09 66.6 65 47.7
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 1.9e-09 65.9 57 56.1
BcaC03g15765 Brassica carinata HOM05D004709 ORTHO05D005669 4.3e-09 64.7 82 46.3
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 4.7e-08 61.2 73 46.6
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 1.0e-07 60.1 79 39.2
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 4.0e-07 58.2 32 81.2


User provided reference genes

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