Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 7.1e-113 410.6 208 100.0
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 2.1e-96 355.9 208 88.9
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 1.4e-92 343.2 210 86.2
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 3.4e-91 338.6 209 86.6
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 1.4e-87 326.6 212 83.5
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 3.0e-87 325.5 214 83.2
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 5.2e-87 324.7 215 80.5
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 5.2e-87 324.7 217 81.6
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 2.6e-86 322.4 213 80.3
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 3.3e-86 322.0 213 81.7
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 1.3e-85 320.1 213 80.8
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 6.3e-85 317.8 216 81.0
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 8.2e-85 317.4 217 78.3
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 8.2e-85 317.4 216 78.2
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 8.2e-85 317.4 216 79.2
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 1.1e-84 317.0 212 79.2
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 1.1e-84 317.0 216 80.6
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 1.4e-84 316.6 217 79.7
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 3.1e-84 315.5 218 79.8
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 3.1e-84 315.5 216 79.6
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 4.1e-84 315.1 217 77.9
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 5.3e-84 314.7 217 78.8
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 9.1e-84 313.9 218 79.4
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 9.1e-84 313.9 210 79.5
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 1.2e-83 313.5 216 76.9
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 2.0e-83 312.8 215 78.1
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 2.6e-83 312.4 210 79.0
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 2.6e-83 312.4 209 79.9
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 2.6e-83 312.4 208 81.2
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 3.5e-83 312.0 210 78.1
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 3.5e-83 312.0 211 79.6
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 3.5e-83 312.0 211 79.6
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 4.5e-83 311.6 215 76.7
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 5.9e-83 311.2 217 79.3
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 5.9e-83 311.2 213 77.5
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 5.9e-83 311.2 219 78.5
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 5.9e-83 311.2 216 77.3
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.7e-83 310.8 213 77.9
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 1.0e-82 310.5 225 74.7
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.0e-82 310.5 210 78.6
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 1.0e-82 310.5 216 78.2
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 1.3e-82 310.1 208 77.9
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.3e-82 310.1 211 79.1
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.3e-82 310.1 211 79.1
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.2e-82 309.3 211 78.7
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 2.9e-82 308.9 211 79.1
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 3.8e-82 308.5 218 76.6
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 3.8e-82 308.5 214 76.6
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 3.8e-82 308.5 210 77.6
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 5.0e-82 308.1 218 77.5
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 5.0e-82 308.1 215 78.1
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 6.5e-82 307.8 213 78.4
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 6.5e-82 307.8 211 79.1
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 6.5e-82 307.8 213 78.4
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 8.5e-82 307.4 214 77.1
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 8.5e-82 307.4 212 77.4
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 8.5e-82 307.4 215 77.2
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 8.5e-82 307.4 211 79.6
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.1e-81 307.0 211 78.7
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 1.1e-81 307.0 211 78.2
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.5e-81 306.6 211 76.8
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.9e-81 306.2 216 77.3
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 1.9e-81 306.2 209 79.9
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 2.5e-81 305.8 212 78.8
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 2.5e-81 305.8 211 79.1
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 3.2e-81 305.4 210 78.6
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 7.2e-81 304.3 216 75.0
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 9.4e-81 303.9 218 76.1
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 2.7e-80 302.4 213 78.4
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 2.7e-80 302.4 215 77.2
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 4.7e-80 301.6 216 75.0
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 4.7e-80 301.6 210 77.1
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 6.1e-80 301.2 216 75.0
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.4e-79 300.1 189 82.5
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.8e-79 299.7 207 75.8
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 2.3e-79 299.3 214 74.8
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 2.3e-79 299.3 215 74.9
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 3.0e-79 298.9 207 75.8
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 4.0e-79 298.5 211 77.3
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 5.2e-79 298.1 217 76.5
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 8.8e-79 297.4 209 75.1
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 8.8e-79 297.4 215 75.8
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 1.5e-78 296.6 213 74.6
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.5e-78 296.6 208 75.5
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.5e-78 296.6 218 75.7
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.0e-78 296.2 208 75.0
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 2.0e-78 296.2 213 75.6
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 2.6e-78 295.8 212 76.4
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 2.6e-78 295.8 212 75.5
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.6e-78 295.8 213 72.8
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 2.6e-78 295.8 213 74.6
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 3.3e-78 295.4 207 75.4
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 3.3e-78 295.4 214 74.3
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 4.4e-78 295.0 217 74.7
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 4.4e-78 295.0 218 73.9
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 4.4e-78 295.0 209 74.2
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 4.4e-78 295.0 207 75.4
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 5.7e-78 294.7 216 74.5
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 7.5e-78 294.3 215 73.5
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 7.5e-78 294.3 217 76.0
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 7.5e-78 294.3 216 73.6
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 7.5e-78 294.3 208 75.5
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 9.7e-78 293.9 216 75.9
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.7e-77 293.1 209 74.2
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 1.7e-77 293.1 214 74.8
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 2.2e-77 292.7 211 76.3
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 6.3e-77 291.2 207 73.9
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 6.3e-77 291.2 210 72.9
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 8.2e-77 290.8 213 75.6
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 8.2e-77 290.8 202 76.2
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 1.1e-76 290.4 215 73.0
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 1.1e-76 290.4 209 75.6
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 5.3e-76 288.1 191 81.7
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 7.0e-76 287.7 212 73.6
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 9.1e-76 287.3 208 74.0
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 2.0e-75 286.2 207 72.9
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.3e-74 283.5 206 77.7
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.3e-74 283.5 206 77.7
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.9e-74 282.3 209 75.1
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.9e-74 282.3 209 75.1
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 2.9e-74 282.3 198 77.3
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 3.8e-74 282.0 206 75.2
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 5.0e-74 281.6 210 71.9
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.1e-73 280.4 206 77.2
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.9e-73 279.6 203 73.4
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 6.8e-71 271.2 151 86.1
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 2.6e-70 269.2 207 70.0
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 7.5e-70 267.7 151 84.8
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 1.3e-69 266.9 208 72.6
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.3e-69 266.9 146 86.3
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 4.8e-69 265.0 193 75.1
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 6.3e-69 264.6 156 83.3
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.2e-67 260.4 168 78.0
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.2e-67 260.4 199 71.4
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.7e-67 259.2 189 75.1
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 3.5e-67 258.8 212 70.8
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 4.5e-67 258.5 210 67.6
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 7.7e-67 257.7 159 80.5
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 1.3e-66 256.9 162 82.7
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 2.9e-66 255.8 216 67.1
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.9e-66 255.8 206 66.5
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 5.4e-60 235.0 217 64.1
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 5.4e-60 235.0 148 79.1
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 2.0e-59 233.0 142 78.9
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 1.5e-57 226.9 154 72.7
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 9.5e-57 224.2 154 74.0
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.7e-51 206.1 217 59.9
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.3e-49 199.1 215 57.7
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 2.1e-40 169.9 92 87.0
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 3.7e-37 159.1 209 50.7
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 3.1e-31 139.4 72 93.1
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 3.4e-22 109.4 106 62.3
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 6.4e-21 105.1 106 62.3
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 1.1e-20 104.4 106 62.3
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 7.9e-11 71.6 85 51.8
Lsat_1_v5_gn_8_63541 Lactuca sativa HOM05D004620 ORTHO05D233710 4.3e-09 65.9 81 54.3


User provided reference genes

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