Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 0.0e+00 1541.9 838 100.0
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 1.2e-240 837.0 868 59.8
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 1.2e-232 810.4 926 56.9
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 1.2e-102 378.6 1102 32.0
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 9.6e-100 369.0 1030 33.7
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 2.9e-96 357.5 1086 32.0
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 8.7e-93 345.9 1036 31.5
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 2.1e-91 341.3 1032 31.7
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 9.0e-90 335.9 1022 31.3
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 3.4e-89 334.0 1048 32.4
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 5.8e-89 333.2 1027 32.3
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 2.2e-88 331.3 1084 30.6
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 1.4e-87 328.6 1039 31.2
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 2.5e-87 327.8 1105 31.2
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 7.1e-87 326.2 1080 30.0
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 9.3e-87 325.9 1024 31.1
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 3.5e-86 323.9 1079 31.0
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 3.5e-86 323.9 1084 29.8
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 1.8e-85 321.6 1100 30.7
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 4.3e-84 317.0 1084 30.0
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 2.1e-83 314.7 1089 30.7
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 4.1e-82 310.5 1103 30.6
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 5.9e-81 306.6 986 32.0
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 2.5e-79 301.2 1098 30.2
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 7.2e-79 299.7 1096 30.6
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 1.2e-78 298.9 1063 30.7
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 1.3e-77 295.4 1088 29.4
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 8.7e-77 292.7 1102 28.6
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 2.5e-76 291.2 977 29.9
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 3.3e-76 290.8 1066 29.9
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 3.3e-76 290.8 1090 29.4
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 4.3e-76 290.4 1053 29.7
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 3.7e-75 287.3 988 30.6
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 4.8e-75 287.0 979 30.8
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 4.8e-75 287.0 997 30.1
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 6.3e-75 286.6 1106 28.8
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 1.8e-74 285.0 1111 29.4
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.8e-74 285.0 1096 28.3
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 2.4e-74 284.6 1098 27.9
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 9.1e-74 282.7 1101 28.4
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 4.5e-73 280.4 1101 29.9
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 5.9e-73 280.0 1090 29.4
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 8.5e-72 276.2 980 30.6
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 1.9e-71 275.0 1074 28.5
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 4.2e-71 273.9 1096 28.4
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 1.2e-70 272.3 954 31.0
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 2.1e-70 271.6 1053 30.1
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.8e-69 268.5 994 29.9
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 2.0e-68 265.0 1012 29.1
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 7.4e-68 263.1 909 31.2
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 2.8e-67 261.2 1116 28.7
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 5.9e-65 253.4 1116 29.0
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 8.5e-64 249.6 1119 28.3
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 1.1e-63 249.2 1048 28.8
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 1.4e-63 248.8 964 30.3
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 5.5e-63 246.9 1065 27.1
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 1.4e-61 242.3 883 30.2
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 1.4e-61 242.3 1058 27.6
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 3.0e-61 241.1 1079 27.4
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 5.2e-61 240.4 876 29.8
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 6.7e-61 240.0 878 29.7
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 6.7e-61 240.0 1061 28.0
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 1.5e-60 238.8 1066 28.1
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 2.0e-60 238.4 1051 27.6
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 4.4e-60 237.3 883 29.9
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 7.4e-60 236.5 416 40.4
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 2.2e-59 235.0 873 29.9
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 2.8e-59 234.6 1024 28.6
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 2.8e-59 234.6 895 29.1
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 4.8e-59 233.8 1029 28.6
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 1.4e-58 232.3 1029 27.9
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 5.3e-58 230.3 1033 27.6
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 2.6e-57 228.0 907 30.2
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 1.0e-56 226.1 881 28.3
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 3.8e-56 224.2 1054 27.4
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 1.9e-55 221.9 1059 28.0
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 5.5e-55 220.3 1013 27.2
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 1.2e-54 219.2 882 27.4
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 1.2e-54 219.2 1096 27.8
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 1.0e-53 216.1 857 27.1
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 2.3e-53 214.9 1019 27.7
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 3.0e-53 214.5 873 28.3
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 8.8e-53 213.0 406 38.9
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 1.2e-52 212.6 911 30.7
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 9.7e-52 209.5 871 29.0
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 9.7e-52 209.5 926 27.9
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 1.7e-51 208.8 915 28.6
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 6.3e-51 206.8 855 28.0
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 1.8e-50 205.3 1074 27.8
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 1.7e-48 198.7 1090 25.6
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 2.2e-48 198.4 447 36.2
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 2.5e-47 194.9 885 28.2
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 7.2e-47 193.4 1039 26.6
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 5.2e-45 187.2 849 27.9
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 3.1e-42 177.9 453 36.2
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 3.2e-39 167.9 220 41.8
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 8.0e-38 163.3 199 47.2
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 5.2e-37 160.6 567 31.9
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 5.2e-37 160.6 811 26.3
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 8.8e-37 159.8 924 27.3
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 5.4e-34 150.6 954 25.7
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 1.1e-31 142.9 522 30.7
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 1.0e-29 136.3 163 47.2
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 1.0e-29 136.3 854 25.8
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 3.7e-27 127.9 375 34.4
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 3.5e-25 121.3 229 39.3
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 2.5e-23 115.2 1226 23.0
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 4.3e-23 114.4 121 51.2
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 3.5e-17 94.7 1016 23.2
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 5.6e-15 87.4 180 33.3
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 7.3e-15 87.0 864 24.0
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 1.2e-14 86.3 794 23.9
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 5.2e-13 80.9 983 24.0
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 2.1e-09 68.9 764 22.5
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 2.7e-09 68.6 966 23.3
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 6.0e-09 67.4 808 23.3
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 1.9e-07 62.4 805 23.2
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 2.5e-07 62.0 733 21.7
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 4.3e-07 61.2 171 28.1
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 5.6e-07 60.8 187 33.7
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 9.5e-07 60.1 280 25.0
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.2e-06 59.7 99 40.4
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 1.6e-06 59.3 122 35.2
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 4.7e-06 57.8 184 31.0
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 6.2e-06 57.4 203 31.0
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 8.1e-06 57.0 112 35.7


User provided reference genes

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