Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 5.6e-104 380.9 191 100.0
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 1.5e-40 170.2 197 57.4
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 9.7e-40 167.5 210 56.2
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 6.3e-39 164.9 206 52.4
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 3.4e-37 159.1 201 51.7
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 3.4e-37 159.1 211 52.6
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 5.9e-37 158.3 197 55.3
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 7.7e-37 157.9 210 51.4
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 2.2e-36 156.4 204 52.9
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 3.8e-36 155.6 207 52.2
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 6.5e-36 154.8 205 51.2
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 1.1e-35 154.1 218 50.5
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 1.4e-35 153.7 202 52.5
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 2.5e-35 152.9 203 47.8
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 4.2e-35 152.1 199 53.8
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 5.5e-35 151.8 198 51.0
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 7.2e-35 151.4 201 50.7
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 1.6e-34 150.2 202 50.5
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 1.6e-34 150.2 202 50.5
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 2.1e-34 149.8 204 52.0
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 2.7e-34 149.4 200 49.0
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 2.7e-34 149.4 203 52.7
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 2.7e-34 149.4 204 52.0
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 2.7e-34 149.4 191 49.2
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 2.7e-34 149.4 205 52.2
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 3.6e-34 149.1 208 50.5
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 6.1e-34 148.3 200 48.5
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 6.1e-34 148.3 203 56.7
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 7.9e-34 147.9 206 49.5
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 1.0e-33 147.5 216 51.4
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 1.4e-33 147.1 203 48.3
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 2.3e-33 146.4 193 52.8
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 2.3e-33 146.4 213 48.4
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 2.3e-33 146.4 204 52.9
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 3.0e-33 146.0 194 52.1
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 3.9e-33 145.6 204 52.0
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 3.9e-33 145.6 202 50.5
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 5.1e-33 145.2 214 45.8
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 5.1e-33 145.2 203 50.2
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 6.7e-33 144.8 205 49.8
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 8.8e-33 144.4 206 50.5
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 1.1e-32 144.1 215 48.4
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 2.6e-32 142.9 217 49.3
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 9.7e-32 141.0 202 51.0
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 9.7e-32 141.0 208 49.5
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 1.3e-31 140.6 202 48.0
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 3.7e-31 139.0 211 47.9
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 6.3e-31 138.3 202 47.0
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 6.3e-31 138.3 188 53.2
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 8.2e-31 137.9 210 48.6
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 1.1e-30 137.5 204 46.6
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.4e-30 137.1 198 48.5
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 1.4e-30 137.1 202 48.5
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 3.1e-30 136.0 208 47.1
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 9.1e-30 134.4 206 46.1
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.2e-29 134.0 202 48.0
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 1.5e-29 133.7 211 50.2
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.6e-29 132.9 195 47.2
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 3.4e-29 132.5 203 47.3
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 5.9e-29 131.7 193 47.7
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 5.9e-29 131.7 193 47.7
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 1.7e-28 130.2 203 47.3
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 2.9e-28 129.4 205 45.9
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 3.8e-28 129.0 200 48.0
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 3.8e-28 129.0 201 47.8
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 5.0e-28 128.6 197 44.7
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 8.5e-28 127.9 203 46.3
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 1.4e-27 127.1 199 43.7
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 2.5e-27 126.3 209 46.4
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.5e-27 126.3 209 46.4
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.5e-27 126.3 209 46.4
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 2.5e-27 126.3 200 44.0
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 2.5e-27 126.3 211 46.0
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 3.2e-27 125.9 200 46.0
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 4.2e-27 125.6 203 46.3
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 7.2e-27 124.8 202 47.0
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 9.4e-27 124.4 204 46.1
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 9.4e-27 124.4 206 46.1
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 9.4e-27 124.4 210 46.2
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 9.4e-27 124.4 225 44.4
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 1.6e-26 123.6 201 47.3
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 3.6e-26 122.5 204 45.6
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 4.7e-26 122.1 213 42.3
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 6.1e-26 121.7 207 46.4
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 2.3e-25 119.8 200 46.0
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 2.3e-25 119.8 217 45.6
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 5.2e-25 118.6 197 42.6
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 6.7e-25 118.2 204 44.1
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 8.8e-25 117.9 201 45.8
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 1.1e-24 117.5 218 42.2
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 2.0e-24 116.7 203 42.4
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 4.4e-24 115.5 221 42.1
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 5.7e-24 115.2 207 42.0
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 7.4e-24 114.8 195 43.1
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 9.7e-24 114.4 198 42.9
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 9.7e-24 114.4 194 43.8
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 1.3e-23 114.0 203 43.8
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 2.8e-23 112.8 197 44.2
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 2.8e-23 112.8 202 42.6
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 3.7e-23 112.5 131 55.7
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 3.7e-23 112.5 218 42.2
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 6.3e-23 111.7 204 42.6
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 1.1e-22 110.9 201 45.3
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 3.1e-22 109.4 202 42.1
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 3.1e-22 109.4 202 42.1
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 3.1e-22 109.4 202 43.1
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 7.0e-22 108.2 214 43.5
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 1.2e-21 107.5 195 44.6
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.2e-21 107.5 218 44.5
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 2.6e-21 106.3 194 41.2
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 2.6e-21 106.3 200 40.5
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 4.5e-21 105.5 211 44.1
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 4.5e-21 105.5 200 41.0
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 4.5e-21 105.5 200 41.0
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 1.0e-20 104.4 194 43.3
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 1.3e-20 104.0 204 41.2
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 1.3e-20 104.0 204 41.2
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 1.3e-20 104.0 206 40.3
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 2.9e-20 102.8 203 43.3
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 3.8e-20 102.4 203 44.3
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 3.8e-20 102.4 203 44.3
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 3.8e-20 102.4 203 44.3
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 5.0e-20 102.1 205 44.4
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 8.5e-20 101.3 232 41.4
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 8.5e-20 101.3 232 41.4
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 2.5e-19 99.8 191 39.3
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 3.2e-19 99.4 214 40.2
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 1.6e-18 97.1 203 42.4
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 3.6e-18 95.9 237 39.2
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 1.4e-17 94.0 215 41.9
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 3.0e-17 92.8 239 39.7
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 2.6e-16 89.7 181 42.5
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 3.3e-16 89.4 105 53.3
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 3.7e-15 85.9 202 38.1
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 1.4e-14 84.0 85 61.2
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 4.1e-14 82.4 77 61.0
Oeu035687.1 Olea europaea HOM05D005099 ORTHO05D006087 1.1e-11 74.3 198 36.9
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 2.5e-11 73.2 44 77.3
GSVIVG01035110001 Vitis vinifera HOM05D005099 ORTHO05D006087 1.2e-10 70.9 103 47.6
arahy.Tifrunner.gnm1.ann1.8JA41T Arachis hypogaea HOM05D008031 ORTHO05D010063 1.3e-07 60.8 193 31.6
Sopen05g032840 Solanum pennellii HOM05D005099 ORTHO05D006087 1.7e-07 60.5 200 30.5
Nitab4.5_0011001g0010 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.2e-07 60.1 203 30.0
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 1.4e-06 57.4 195 30.8
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 4.1e-06 55.8 197 31.5
arahy.Tifrunner.gnm1.ann1.CKB8X1 Arachis hypogaea HOM05D008031 ORTHO05D010063 5.4e-06 55.5 193 31.1
unitig_88.g27793 Utricularia gibba HOM05D005099 ORTHO05D006087 9.1e-06 54.7 198 33.8


User provided reference genes

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